CX287176

Overview
NameCX287176
Unique NameCX287176
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig266 contig Ccv1_Contig266:617..1303. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287176 vs. ExPASy Swiss-Prot
Match: PME12_ARATH (Probable pectinesterase/pectinesterase inhibitor 12 OS=Arabidopsis thaliana GN=PME12 PE=2 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 1.074e-71
Identity = 122/182 (67.03%), Postives = 149/182 (81.87%), Query Frame = 3
Query:    3 TLYAHSFRQFYRECDVYGTIDYIFGNAAVVLQACNIVSRLPLPGQFTVITAQLKDDPNENTGISIQNCSILATEDLYANSASVKSYLGRPLKIYSTTVFLESYIDDFIEPAGWTEWSGDQGLDTLYYGEFNNYGPGSGTDNRVTWPGYHVMDENDAYAFTVSQLIDGQEWLDSTSIPYQDGI 548
            TLY HSFRQFYRECD+YGTIDYIFGNAAVV Q CNIVS+LP+PGQFTVITAQ +D  +E+TGIS+QNCSILA+EDL+ +S  VKSYLGRP + +S TV +ESYID+FI+ +GW++W+G + LDTLYYGE+NN GPGS T  RV WPG+H+M   DA+ FT ++ I G  WL STS PY +GI
Sbjct:  366 TLYTHSFRQFYRECDIYGTIDYIFGNAAVVFQGCNIVSKLPMPGQFTVITAQSRDTQDEDTGISMQNCSILASEDLFNSSNKVKSYLGRPWREFSRTVVMESYIDEFIDGSGWSKWNGGEALDTLYYGEYNNNGPGSETVKRVNWPGFHIMGYEDAFNFTATEFITGDGWLGSTSFPYDNGI 547          
BLAST of CX287176 vs. ExPASy Swiss-Prot
Match: PME7_ARATH (Probable pectinesterase/pectinesterase inhibitor 7 OS=Arabidopsis thaliana GN=PME7 PE=2 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 1.502e-65
Identity = 111/182 (60.99%), Postives = 137/182 (75.27%), Query Frame = 3
Query:    3 TLYAHSFRQFYRECDVYGTIDYIFGNAAVVLQACNIVSRLPLPGQFTVITAQLKDDPNENTGISIQNCSILATEDLYANSASVKSYLGRPLKIYSTTVFLESYIDDFIEPAGWTEWSGDQGLDTLYYGEFNNYGPGSGTDNRVTWPGYHVMDENDAYAFTVSQLIDGQEWLDSTSIPYQDGI 548
            TLY HS RQFYRECDVYGT+D+IFGNAAVV Q CN+  R P+P QF  ITAQ + DPN+NTG SIQNC+I   +DL +++ +VK+YLGRP K YS TV+++SYID F+EP GW EW+GD  L TLYY E+NN GPGS T NRVTWPGYHV++  DA  FTV+ L    +W+  T +PY  G+
Sbjct:  396 TLYTHSLRQFYRECDVYGTVDFIFGNAAVVFQNCNLYPRKPMPNQFNAITAQGRSDPNQNTGTSIQNCTIKPADDLVSSNYTVKTYLGRPWKEYSRTVYMQSYIDGFVEPVGWREWNGDFALSTLYYAEYNNTGPGSNTTNRVTWPGYHVINSTDAANFTVTGLFIEADWIWKTGVPYTSGL 577          
BLAST of CX287176 vs. ExPASy Swiss-Prot
Match: PME41_ARATH (Probable pectinesterase/pectinesterase inhibitor 41 OS=Arabidopsis thaliana GN=PME41 PE=2 SV=2)

HSP 1 Score: 237.269 bits (604), Expect = 5.906e-62
Identity = 105/182 (57.69%), Postives = 133/182 (73.08%), Query Frame = 3
Query:    3 TLYAHSFRQFYRECDVYGTIDYIFGNAAVVLQACNIVSRLPLPGQFTVITAQLKDDPNENTGISIQNCSILATEDLYANSASVKSYLGRPLKIYSTTVFLESYIDDFIEPAGWTEWSGDQGLDTLYYGEFNNYGPGSGTDNRVTWPGYHVMDENDAYAFTVSQLIDGQEWLDSTSIPYQDGI 548
            TLY HS RQFYRECD+YGT+D+IFGNAAVV Q CN+  R P+  QF  ITAQ + DPN+NTGISI NC+I   +DL +++ +VK+YLGRP K YS TVF++SYID+ +EP GW EW+GD  L TLYY E+NN G GS T +RV WPGYHV++  DA  FTV   + G  W+  + +PY  G+
Sbjct:  390 TLYTHSLRQFYRECDIYGTVDFIFGNAAVVFQDCNLYPRQPMQNQFNAITAQGRTDPNQNTGISIHNCTIKPADDLVSSNYTVKTYLGRPWKEYSRTVFMQSYIDEVVEPVGWREWNGDFALSTLYYAEYNNTGSGSSTTDRVVWPGYHVINSTDANNFTVENFLLGDGWMVQSGVPYISGL 571          
BLAST of CX287176 vs. ExPASy Swiss-Prot
Match: PME20_ARATH (Probable pectinesterase/pectinesterase inhibitor 20 OS=Arabidopsis thaliana GN=PME20 PE=2 SV=2)

HSP 1 Score: 234.958 bits (598), Expect = 2.931e-61
Identity = 105/182 (57.69%), Postives = 133/182 (73.08%), Query Frame = 3
Query:    3 TLYAHSFRQFYRECDVYGTIDYIFGNAAVVLQACNIVSRLPLPGQFTVITAQLKDDPNENTGISIQNCSILATEDLYANSASVKSYLGRPLKIYSTTVFLESYIDDFIEPAGWTEWSGDQGLDTLYYGEFNNYGPGSGTDNRVTWPGYHVMDENDAYAFTVSQLIDGQEWLDSTSIPYQDGI 548
            TLY HS RQFYRECDVYGT+D+IFGNAAVVLQ CN+  R P  GQ   +TAQ + DPN+NTG +I  C+I   +DL  ++ +VK+YLGRP K YS TV +++YID F+EP+GW  WSGD  L TLYY E+NN GPGS T NRVTWPGYHV++  DA  FTV+  + G+ W+  T +P+  G+
Sbjct:  377 TLYTHSLRQFYRECDVYGTVDFIFGNAAVVLQNCNLYPRQPRKGQSNEVTAQGRTDPNQNTGTAIHGCTIRPADDLATSNYTVKTYLGRPWKEYSRTVVMQTYIDGFLEPSGWNAWSGDFALSTLYYAEYNNTGPGSDTTNRVTWPGYHVINATDASNFTVTNFLVGEGWIGQTGVPFVGGL 558          
BLAST of CX287176 vs. ExPASy Swiss-Prot
Match: PME25_ARATH (Probable pectinesterase/pectinesterase inhibitor 25 OS=Arabidopsis thaliana GN=PME25 PE=2 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.274e-56
Identity = 99/182 (54.40%), Postives = 128/182 (70.33%), Query Frame = 3
Query:    3 TLYAHSFRQFYRECDVYGTIDYIFGNAAVVLQACNIVSRLPLPGQFTVITAQLKDDPNENTGISIQNCSILATEDLYANSASVKSYLGRPLKIYSTTVFLESYIDDFIEPAGWTEWSGDQGLDTLYYGEFNNYGPGSGTDNRVTWPGYHVMDENDAYAFTVSQLIDGQEWLDSTSIPYQDGI 548
            TLY HS RQFYRECD+YGT+D+IFGNAA + Q CNI +R P+  Q   ITA  + DPN+NTGISI NC+I A  DL A   S  ++LGRP K YS TVF++SYI D ++P GW EW+G  GLDT+YYGE++N+GPG+ T+ RV W GY++++  +A  FTV     G  WL  T IP+  G+
Sbjct:  434 TLYVHSLRQFYRECDIYGTVDFIFGNAAAIFQNCNIYARKPMAKQKNAITAHGRLDPNQNTGISIINCTIKAAPDLAAEPKSAMTFLGRPWKPYSRTVFMQSYISDIVQPVGWLEWNGTIGLDTIYYGEYSNFGPGANTNQRVQWLGYNLLNLAEAMNFTVYNFTMGDTWLPQTDIPFYGGL 615          
BLAST of CX287176 vs. ExPASy Swiss-Prot
Match: PME_ACTDE (Pectinesterase OS=Actinidia deliciosa PE=1 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 4.843e-56
Identity = 106/178 (59.55%), Postives = 123/178 (69.10%), Query Frame = 3
Query:    3 TLYAHSFRQFYRECDVYGTIDYIFGNAAVVLQACNIVSRLPLPGQFTVITAQLKDDPNENTGISIQNCSILATEDLYANSASVKSYLGRPLKIYSTTVFLESYIDDFIEPAGWTEWSGDQGLDTLYYGEFNNYGPGSGTDNRVTWPGYHV-MDENDAYAFTVSQLIDGQEWLDSTSIP 533
            TLY HS RQFY ECDVYGTID+IFGNAA VLQ CN+ +R P   Q  + TAQ +DDPN+NTGISI NC + A  DL    +S K+YLGRP K YS TVFL S ++  I+PAGW EWSGD  L TLYY E+ N GPGS T  RVTWPGY V  +E +   FTV   I G +WL S +IP
Sbjct:  138 TLYVHSLRQFYSECDVYGTIDFIFGNAAAVLQKCNLYARKPNENQKNIFTAQGRDDPNQNTGISILNCKVAAAADLIPVLSSFKTYLGRPWKEYSRTVFLLSQMESLIDPAGWLEWSGDFALTTLYYREYKNTGPGSNTTARVTWPGYAVTTNETEVIQFTVGNFIQGSQWLTSYNIP 315          
BLAST of CX287176 vs. ExPASy Swiss-Prot
Match: PME1_FICAW (Pectinesterase/pectinesterase inhibitor OS=Ficus awkeotsang PE=1 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 4.843e-56
Identity = 104/183 (56.83%), Postives = 128/183 (69.95%), Query Frame = 3
Query:    3 TLYAHSFRQFYRECDVYGTIDYIFGNAAVVLQACNIVSRLPLPGQFTVITAQLKDDPNENTGISIQNCSILATEDLYANSASVKSYLGRPLKIYSTTVFLESYIDDFIEPAGWTEWSGDQGLDTLYYGEFNNYGPGSGTDNRVTWPGYHVMDEND-AYAFTVSQLIDGQEWLDSTSIPYQDGI 548
            TLY H++RQFYR+ ++ GT+D+IFGNAAVV Q CN++ R  + GQ   ITAQ + DPN+NTG SIQNC I A+ DL     + KSYLGRP K YS TV +ESYI D I+PAGW EW  D  L TL+YGE+ N GPGSGT  RV WPGYHV+   + A  FTV++LI G  WL ST + Y  G+
Sbjct:  361 TLYPHNYRQFYRDRNITGTVDFIFGNAAVVFQNCNLIPRKQMKGQENTITAQGRTDPNQNTGTSIQNCEIFASADLEPVEDTFKSYLGRPWKEYSRTVVMESYISDVIDPAGWLEWDRDFALKTLFYGEYRNGGPGSGTSERVKWPGYHVITSPEVAEQFTVAELIQGGSWLGSTGVDYTAGL 543          
BLAST of CX287176 vs. ExPASy Swiss-Prot
Match: PME2_CITSI (Pectinesterase 2 OS=Citrus sinensis GN=PECS-2.1 PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.079e-55
Identity = 101/183 (55.19%), Postives = 129/183 (70.49%), Query Frame = 3
Query:    3 TLYAHSFRQFYRECDVYGTIDYIFGNAAVVLQACNIVSRLPLPGQFTVITAQLKDDPNENTGISIQNCSILATEDLYANSASVKSYLGRPLKIYSTTVFLESYIDDFIEPAGWTEWSGDQGLDTLYYGEFNNYGPGSGTDNRVTWPGYHVM-DENDAYAFTVSQLIDGQEWLDSTSIPYQDGI 548
            TLY HS RQFYRECD+YGT+D+IFGNAAVVLQ CNI +R P P +   +TAQ + DPN++TGI I NC + A  DL    +SVK++LGRP K YS TV++++++D  I PAGW EWSGD  L+TLYY E+ N GPGS T NRV W GYHV+   +    FTV   I G  WL +T++P+  G+
Sbjct:  329 TLYVHSQRQFYRECDIYGTVDFIFGNAAVVLQNCNIFARKP-PNRTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 510          
BLAST of CX287176 vs. ExPASy Swiss-Prot
Match: PME3_SOLLC (Pectinesterase 3 OS=Solanum lycopersicum GN=PME3 PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.840e-55
Identity = 105/183 (57.38%), Postives = 131/183 (71.58%), Query Frame = 3
Query:    3 TLYAHSFRQFYRECDVYGTIDYIFGNAAVVLQACNIVSRLPLPGQFTVITAQLKDDPNENTGISIQNCSILATEDLYANSASVKSYLGRPLKIYSTTVFLESYIDDFIEPAGWTEWSGDQGLDTLYYGEFNNYGPGSGTDNRVTWPGYHVM-DENDAYAFTVSQLIDGQEWLDSTSIPYQDGI 548
            TLYAHS RQFYR+  V GT+D+IFGNAAVV Q C IV+R P   Q  ++TAQ + DPN+ TG SIQ C I+A+ DL       K+YLGRP K +S TV ++SY+D  I+P+GW EW GD  L TLYYGEF N GPG+GT  RV WPGYHV+ D N+A  FTV++LI G  WL+STS+ Y +G+
Sbjct:  360 TLYAHSQRQFYRDSYVTGTVDFIFGNAAVVFQKCQIVARKPNKRQKNMVTAQGRTDPNQATGTSIQFCDIIASPDLEPVMNEYKTYLGRPWKKHSRTVVMQSYLDGHIDPSGWFEWRGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPNEAMPFTVAELIQGGSWLNSTSVAYVEGL 542          
BLAST of CX287176 vs. ExPASy Swiss-Prot
Match: PME61_ARATH (Probable pectinesterase/pectinesterase inhibitor 61 OS=Arabidopsis thaliana GN=PME61 PE=1 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 5.354e-55
Identity = 100/182 (54.95%), Postives = 128/182 (70.33%), Query Frame = 3
Query:    6 LYAHSFRQFYRECDVYGTIDYIFGNAAVVLQACNIVSRLPLPGQFTVITAQLKDDPNENTGISIQNCSILATEDLYANSASVKSYLGRPLKIYSTTVFLESYIDDFIEPAGWTEWSGDQGLDTLYYGEFNNYGPGSGTDNRVTWPGYHVMDEN-DAYAFTVSQLIDGQEWLDSTSIPYQDGI 548
            LY HS RQF+REC++YGT+D+IFGNAAV+LQ+CNI +R P+  Q   ITAQ + DPN+NTGISI  C +LAT DL A+  S  +YLGRP K+YS  V++ S + D I+P GW EW+G   LD+LYYGE+ N G GSG   RV WPGYHV+    +A  FTV+Q I G  WL ST + +  G+
Sbjct:  404 LYVHSNRQFFRECEIYGTVDFIFGNAAVILQSCNIYARKPMAQQKITITAQNRKDPNQNTGISIHACKLLATPDLEASKGSYPTYLGRPWKLYSRVVYMMSDMGDHIDPRGWLEWNGPFALDSLYYGEYMNKGLGSGIGQRVKWPGYHVITSTVEASKFTVAQFISGSSWLPSTGVSFFSGL 585          
The following BLAST results are available for this feature:
BLAST of CX287176 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
PME12_ARATH1.074e-7167.03Probable pectinesterase/pectinesterase inhibitor 1... [more]
PME7_ARATH1.502e-6560.99Probable pectinesterase/pectinesterase inhibitor 7... [more]
PME41_ARATH5.906e-6257.69Probable pectinesterase/pectinesterase inhibitor 4... [more]
PME20_ARATH2.931e-6157.69Probable pectinesterase/pectinesterase inhibitor 2... [more]
PME25_ARATH1.274e-5654.40Probable pectinesterase/pectinesterase inhibitor 2... [more]
PME_ACTDE4.843e-5659.55Pectinesterase OS=Actinidia deliciosa PE=1 SV=1[more]
PME1_FICAW4.843e-5656.83Pectinesterase/pectinesterase inhibitor OS=Ficus a... [more]
PME2_CITSI1.079e-5555.19Pectinesterase 2 OS=Citrus sinensis GN=PECS-2.1 PE... [more]
PME3_SOLLC1.840e-5557.38Pectinesterase 3 OS=Solanum lycopersicum GN=PME3 P... [more]
PME61_ARATH5.354e-5554.95Probable pectinesterase/pectinesterase inhibitor 6... [more]

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Properties
Property NameValue
Genbank descriptionC01005E08SK Veg1 Citrus clementina cDNA clone C01005E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287176 ID=CX287176; Name=CX287176; organism=Citrus clementina; type=EST; length=687bp
ATACGTTATATGCACACTCATTTCGTCAGTTTTACCGAGAGTGCGACGTA
TACGGAACCATAGACTACATATTTGGTAACGCTGCAGTGGTTCTCCAGGC
ATGTAACATCGTATCTAGACTGCCATTACCAGGGCAATTCACAGTCATCA
CAGCACAATTAAAAGACGACCCGAATGAAAACACTGGAATCTCAATCCAA
AATTGTTCAATTTTGGCTACTGAAGATCTGTATGCAAATTCTGCAAGTGT
TAAAAGTTACCTAGGCAGGCCCTTGAAGATCTACTCAACAACAGTTTTTC
TTGAGTCCTACATTGATGACTTTATTGAGCCAGCCGGGTGGACCGAGTGG
TCAGGTGATCAAGGCTTGGACACATTGTACTACGGAGAGTTCAATAATTA
CGGTCCAGGTTCCGGGACCGATAATCGGGTCACTTGGCCCGGGTATCATG
TCATGGATGAGAATGATGCATATGCTTTTACTGTATCACAGTTAATTGAT
GGTCAGGAGTGGCTGGATTCAACTTCAATTCCTTACCAAGATGGGATTTA
ATCACCATCTTTTGTGAAAATTAATTTTTATTTTTATTAAGTTCGAATGT
AACTAGAACTCTTGTTTGTATTAGTTTGGTTTCTAAAGTAGATATTATGA
AATTAGGTTGACGTAAGGAAATGATTTGATCTGTCAA
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