CX287193

Overview
NameCX287193
Unique NameCX287193
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length628
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287193 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 306.605 bits (784), Expect = 6.714e-83
Identity = 139/176 (78.98%), Postives = 154/176 (87.50%), Query Frame = 1
Query:  100 QKSRSVAGATKASFXXXXXXXXXXXXATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGY 627
            QK+ S+ GATKASF            A  G+RSV+VSA AADP+RPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPE+L+WN Q+E+VH RWAMLGAAGIFIPE LTK+G+LNTPSWYTAGE EYFTDTTTLF++E++ IGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGY
Sbjct:   21 QKNGSIVGATKASFLGGKRLRVSKFIAPVGSRSVAVSAVAADPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPSWYTAGEQEYFTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGY 196          
BLAST of CX287193 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 294.664 bits (753), Expect = 2.640e-79
Identity = 135/176 (76.70%), Postives = 147/176 (83.52%), Query Frame = 1
Query:  100 QKSRSVAGATKASFXXXXXXXXXXXXATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGY 627
            +++ S+ G TKASF             T   RS +    AADP+RPLWFPGSTPP WLDGSLPGDFGFDPLGL SDPE+LRWN Q+E+VHCRWAMLGAAGIFIPELLTK+GILNTPSWYTAGE EYFTDTTTLFIVE++ IGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGY
Sbjct:   21 RRNGSIVGTTKASFLGGRRLRVSKYSTTPTARSATTVCVAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGILNTPSWYTAGEQEYFTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGY 196          
BLAST of CX287193 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.566e-39
Identity = 73/129 (56.59%), Postives = 89/129 (68.99%), Query Frame = 1
Query:  241 WFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGY 627
            W PG   P +L GSLPGD GFDPLGL  DPE LRW VQ+E+V+ RWAMLG AG+ +PE+ T +GI+N P WY AG+ EYF  ++TLF++E I   + E RRW DI  PG VN DPIF    L   +VGY
Sbjct:   56 WLPGLASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEYFASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGY 184          
BLAST of CX287193 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.671e-39
Identity = 73/144 (50.69%), Postives = 95/144 (65.97%), Query Frame = 1
Query:  196 SVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGY 627
            S   S+   +  +  W PG   P++L GSL GD GFDPLGL  DPE L+W VQ+E+V+ RWAMLG AG+ +PE+ TK+GI+N P WY AG+ +YF  ++TLF++E I   + E RRW DI  PG VN DPIF    L   +VGY
Sbjct:   42 SAKTSSFKVEAKKGEWLPGLASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPKGEVGY 185          
BLAST of CX287193 vs. ExPASy Swiss-Prot
Match: CB120_HORVU (Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.965e-31
Identity = 71/146 (48.63%), Postives = 88/146 (60.27%), Query Frame = 1
Query:  193 RSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWY-TAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGY 627
            R V+V A  +      W PG   P +LDGSL GD GFDPL L  DPE LRW VQ+++V+ RWAMLG AG+ IPE+LTK G++N P W    G+  YF  ++T   V M    + E RRW DI  PG VN DPIF +  L   + GY
Sbjct:   26 RDVAVQAKGS------WLPGLQSPAYLDGSLEGDNGFDPLALAEDPEDLRWFVQADVVNGRWAMLGVAGMLIPEVLTKAGLMNAPEWLRLPGKETYFASSSTALRVHMSST-YVEIRRWQDIKNPGSVNQDPIFKSYSLPPHECGY 164          
BLAST of CX287193 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 7.808e-23
Identity = 64/147 (43.54%), Postives = 83/147 (56.46%), Query Frame = 1
Query:  190 TRSVSVSAAAADP------NRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETL------RWNVQSEIVHCRWAMLGAAGIFIPELLTKLGIL---NTPSWY------TAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPG 567
            +R   V AAA  P      +RPLWF       +LDGSLPGD+GFDPLGL SDPE        RW    E+++ R+AMLGA G   PE L K+G++      +W+       AG   Y+ D  TLF++EM  +G+AE RR+ D  KPG
Sbjct:   35 SRKGLVRAAATPPVKQGGVDRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPG 180          
BLAST of CX287193 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.272e-22
Identity = 60/160 (37.50%), Postives = 83/160 (51.88%), Query Frame = 1
Query:  115 VAGATKASFXXXXXXXXXXXXATAGTRSVSVSAAAADPNRPLWFPGST------PPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTA----GELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKP 564
            ++G  K+S              +  +R + V AAAA P +  W P          PEWLDGSLPGDFGFDPLGLG DP  L+W  ++E++H RWAML   GIF+ +  T +       W+ A    G +  F+   TL   +++ +GW E +RW D   P
Sbjct:   19 LSGGKKSSQSLLFVNSKVGAGVSTTSRKLVVVAAAAAPKKS-WIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIFVGQAWTGI------PWFEAGADPGAVAPFS-FGTLLGTQLLLMGWVESKRWVDFFDP 170          
BLAST of CX287193 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.272e-22
Identity = 60/140 (42.86%), Postives = 78/140 (55.71%), Query Frame = 1
Query:  193 RSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETL------RWNVQSEIVHCRWAMLGAAGIFIPELLTKLGIL---NTPSWY------TAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPG 567
            R+ S        NR LWF       +LDG LPGDFGFDPLGL SDPE        +W    E+++ R+AMLGAAG   PE+L K G++      +W+       AG   Y+ D  TLF++EM  +G+AE RR+ D  KPG
Sbjct:   40 RAASTPPVKQGANRQLWFASKQSLSYLDGRLPGDFGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPG 178          
BLAST of CX287193 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.737e-20
Identity = 56/150 (37.33%), Postives = 79/150 (52.67%), Query Frame = 1
Query:  184 AGTRSVSVSAAAADPNRPLWFPGS------TPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTA----GELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNK 603
            A  +  +V AAAA  +   W P          PEWLDGSLPGD+GFDPLGLG DP  L+W  ++E++H RWAM    GIF+ +  + +       W+ A    G +  F+   TL   ++I +GW E +RW D   P   + +   P +K
Sbjct:   39 ATPKRFTVLAAAAKKS---WIPAVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGI------PWFEAGADPGAIAPFS-FGTLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSK 178          
BLAST of CX287193 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.055e-19
Identity = 54/143 (37.76%), Postives = 76/143 (53.15%), Query Frame = 1
Query:  205 VSAAAADPNRPLWFPGS------TPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTA----GELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNK 603
            V+AAA  P +  W P          PEWLDGSLPGDFGFDPLGLG DP  L+W  ++E++H RWAM    GIF+ +  + +       W+ A    G +  F+   +L   +++ +GW E +RW D       + D   P +K
Sbjct:   44 VAAAAVAPKKS-WIPAVKSGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGI------PWFEAGADPGAIAPFS-FGSLLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSK 178          
The following BLAST results are available for this feature:
BLAST of CX287193 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
CB12_PETHY6.714e-8378.98Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB12_SOLLC2.640e-7976.70Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB24_PEA1.566e-3956.59Chlorophyll a-b binding protein P4, chloroplastic ... [more]
CB24_ARATH2.671e-3950.69Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB120_HORVU5.965e-3148.63Chlorophyll a-b binding protein 1B-20, chloroplast... [more]
CB23_PEA7.808e-2343.54Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB4_SPIOL2.272e-2237.50Chlorophyll a-b binding protein CP24, chloroplasti... [more]
CB13_SOLLC2.272e-2242.86Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB4A_SOLLC4.737e-2037.33Chlorophyll a-b binding protein CP24 10A, chloropl... [more]
CB4B_SOLLC1.055e-1937.76Chlorophyll a-b binding protein CP24 10B, chloropl... [more]

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Properties
Property NameValue
Genbank descriptionC01005G04SK Veg1 Citrus clementina cDNA clone C01005G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287193 ID=CX287193; Name=CX287193; organism=Citrus clementina; type=EST; length=628bp
GAATTCGGCACGAGGTTTGCTGAAAGCCTTTGCCTGGTAGTAAAAATGGC
TTCCGTTTGTGCTTCCCCTGCCGTTGCAGCCATCTCATCCCCCAGTTCTC
AGAAGAGTAGATCAGTTGCGGGAGCAACAAAGGCTTCTTTCCTTGGTGGG
AAGAAGCTGAAATTGAGAAAAAACGGAGCAACAGCGGGAACACGATCGGT
TTCAGTGAGTGCGGCTGCAGCTGATCCTAACAGGCCTCTCTGGTTCCCAG
GCAGCACTCCTCCTGAATGGCTCGATGGTAGCCTCCCCGGAGACTTCGGC
TTCGATCCTCTTGGTCTTGGATCTGATCCTGAGACGCTGAGATGGAACGT
GCAATCAGAAATTGTGCACTGCAGATGGGCAATGTTAGGAGCTGCAGGAA
TTTTCATTCCGGAATTGTTAACAAAACTTGGAATCCTCAACACTCCATCC
TGGTACACAGCTGGGGAGCTAGAGTACTTCACAGACACCACCACCCTGTT
CATTGTTGAGATGATATTCATAGGCTGGGCAGAGGGCAGACGGTGGGCCG
ACATTATAAAGCCAGGCTGTGTGAACACTGACCCGATCTTCCCCAACAAC
AAGCTCACCGGCACCGATGTTGGGTACC
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