CX287199

Overview
NameCX287199
Unique NameCX287199
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length643
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX287199 vs. ExPASy Swiss-Prot
Match: RH8_ORYSJ (DEAD-box ATP-dependent RNA helicase 8 OS=Oryza sativa subsp. japonica GN=Os02g0641800 PE=2 SV=2)

HSP 1 Score: 413.305 bits (1061), Expect = 5.304e-115
Identity = 202/212 (95.28%), Postives = 210/212 (99.06%), Query Frame = 3 
Query:    6 RELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACR 641
            RELALQTSQVCKELGKHL IQVMVTTGGTSLKDDI+RLYQPVHLLVGTPGRILDL+KKG+CILKDCSML+MDEADKLLSPEFQPSVEQLIR+LPA+RQILMFSATFPVTVK+FKDKYL KPYVINLMDELTLKGITQ+YAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACR
Sbjct:  212 RELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIIRLYQPVHLLVGTPGRILDLTKKGICILKDCSMLIMDEADKLLSPEFQPSVEQLIRYLPASRQILMFSATFPVTVKEFKDKYLPKPYVINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACR 423
[Close]
BLAST of CX287199 vs. ExPASy Swiss-Prot
Match: RH12_ORYSJ (DEAD-box ATP-dependent RNA helicase 12 OS=Oryza sativa subsp. japonica GN=Os10g0503700 PE=2 SV=2)

HSP 1 Score: 411.379 bits (1056), Expect = 2.015e-114
Identity = 199/212 (93.87%), Postives = 210/212 (99.06%), Query Frame = 3 
Query:    6 RELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACR 641
            RELALQTSQVCKELGK+LNIQVMV+TGGTSLKDDIMRLYQPVHLLVGTPGRILDL++KG+C+LKDCSMLVMDEADKLL+PEFQPS+EQLI FLPANRQ+LMFSATFPVTVKDFK+KYL +PYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACR
Sbjct:  225 RELALQTSQVCKELGKYLNIQVMVSTGGTSLKDDIMRLYQPVHLLVGTPGRILDLTRKGICVLKDCSMLVMDEADKLLAPEFQPSIEQLIHFLPANRQLLMFSATFPVTVKDFKEKYLPRPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACR 436
[Close]
BLAST of CX287199 vs. ExPASy Swiss-Prot
Match: RH6_ORYSJ (DEAD-box ATP-dependent RNA helicase 6 OS=Oryza sativa subsp. japonica GN=Os04g0533000 PE=2 SV=1)

HSP 1 Score: 409.838 bits (1052), Expect = 5.864e-114
Identity = 199/212 (93.87%), Postives = 210/212 (99.06%), Query Frame = 3 
Query:    6 RELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACR 641
            RELALQTSQVCKELGKHL IQVMVTTGGTSLKDDI+RLYQPVHLLVGTPGRILDL+KKGVC+LK+CSMLVMDEADKLLSPEFQPS+++LIR+LP+NRQILMFSATFPVTVK+FKDKYL KPYVINLMDELTLKGITQ+YAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACR
Sbjct:  202 RELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIVRLYQPVHLLVGTPGRILDLTKKGVCVLKNCSMLVMDEADKLLSPEFQPSIQELIRYLPSNRQILMFSATFPVTVKEFKDKYLPKPYVINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACR 413
[Close]
BLAST of CX287199 vs. ExPASy Swiss-Prot
Match: RH8_ARATH (DEAD-box ATP-dependent RNA helicase 8 OS=Arabidopsis thaliana GN=RH8 PE=2 SV=1)

HSP 1 Score: 402.134 bits (1032), Expect = 1.223e-111
Identity = 197/212 (92.92%), Postives = 205/212 (96.70%), Query Frame = 3 
Query:    6 RELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACR 641
            RELALQTSQVCKELGKHL IQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDL+KKGVC+LKDCS+LVMDEADKLLS EFQPSVE LI FLP +RQILMFSATFPVTVKDFKD++L  PYVINLMDELTLKGITQ+YAFVEERQK+HCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACR
Sbjct:  209 RELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPESRQILMFSATFPVTVKDFKDRFLTNPYVINLMDELTLKGITQFYAFVEERQKIHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACR 420
[Close]
BLAST of CX287199 vs. ExPASy Swiss-Prot
Match: RH6_ARATH (DEAD-box ATP-dependent RNA helicase 6 OS=Arabidopsis thaliana GN=RH6 PE=2 SV=2)

HSP 1 Score: 394.815 bits (1013), Expect = 1.952e-109
Identity = 190/212 (89.62%), Postives = 206/212 (97.17%), Query Frame = 3 
Query:    6 RELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACR 641
            RELALQTSQVCKEL K+L I+VMVTTGGTSL+DDIMRLYQPVHLLVGTPGRILDL+KKGVC+LKDC+MLVMDEADKLLS EFQPS+E+LI+FLP +RQILMFSATFPVTVK FKD+YL+KPY+INLMD+LTL G+TQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKM+QDHRNRVFHDFRNGACR
Sbjct:  232 RELALQTSQVCKELSKYLKIEVMVTTGGTSLRDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCAMLVMDEADKLLSVEFQPSIEELIQFLPESRQILMFSATFPVTVKSFKDRYLKKPYIINLMDQLTLMGVTQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHDFRNGACR 443
[Close]
BLAST of CX287199 vs. ExPASy Swiss-Prot
Match: RH12_ARATH (DEAD-box ATP-dependent RNA helicase 12 OS=Arabidopsis thaliana GN=RH12 PE=2 SV=1)

HSP 1 Score: 392.504 bits (1007), Expect = 9.688e-109
Identity = 190/212 (89.62%), Postives = 206/212 (97.17%), Query Frame = 3 
Query:    6 RELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACR 641
            RELALQTSQVCKEL K+LNIQVMVTTGGTSL+DDIMRL+QPVHLLVGTPGRILDL+KKGVC+LKDC+MLVMDEADKLLS EFQPS+E+LI+FLP NRQ LMFSATFPVTVK FKD++L+KPYVINLMD+LTL G+TQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKM+QDHRNRVFH+FRNGACR
Sbjct:  202 RELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQPVHLLVGTPGRILDLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELIQFLPQNRQFLMFSATFPVTVKAFKDRHLRKPYVINLMDQLTLMGVTQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHEFRNGACR 413
[Close]
BLAST of CX287199 vs. ExPASy Swiss-Prot
Match: DDX6_DICDI (Probable ATP-dependent RNA helicase ddx6 OS=Dictyostelium discoideum GN=ddx6 PE=3 SV=1)

HSP 1 Score: 359.762 bits (922), Expect = 6.959e-99
Identity = 173/212 (81.60%), Postives = 193/212 (91.04%), Query Frame = 3 
Query:    6 RELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACR 641
            RELALQTSQVCKELGK++N+QVM +TGGTSLKDDIMRLY PVH+LV TPGR+LDL++K V  L +C  ++MDEADKLLS EFQP VEQLI FLP  RQIL+FSATFPVTVK FK+ YLQ+ + INLM+ELTLKG+TQYYAFVEERQK+HCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCF+IHAKM+Q HRNRVFHDFRNGACR
Sbjct:  127 RELALQTSQVCKELGKYMNVQVMASTGGTSLKDDIMRLYNPVHILVATPGRVLDLAQKNVANLSNCHTMIMDEADKLLSQEFQPLVEQLINFLPQQRQILLFSATFPVTVKSFKEHYLQQAFEINLMEELTLKGVTQYYAFVEERQKIHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFFIHAKMVQAHRNRVFHDFRNGACR 338
[Close]
BLAST of CX287199 vs. ExPASy Swiss-Prot
Match: DHH1_NEOFI (ATP-dependent RNA helicase dhh1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=dhh1 PE=3 SV=1)

HSP 1 Score: 345.125 bits (884), Expect = 1.774e-94
Identity = 166/212 (78.30%), Postives = 184/212 (86.79%), Query Frame = 3 
Query:    6 RELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACR 641
            RELALQTSQVCK LGKHL I VMVTTGGT L DDI+RL   VH+LVGTPGR+LDL+ KGV  L +C   VMDEADKLLSPEF P +EQL+ F P +RQ+++FSATFP+ VK FKDK+++ PY INLMDELTL+GITQYYAFVEE+QKVHCLNTLFSKLQINQSIIFCNS NRVELLAKKITELGYSCFY HA+MLQ HRNRVFHDFRNG CR
Sbjct:  125 RELALQTSQVCKTLGKHLGINVMVTTGGTGLMDDIIRLNDAVHILVGTPGRVLDLASKGVADLSECPTFVMDEADKLLSPEFTPVIEQLLSFHPKDRQVMLFSATFPLIVKSFKDKHMRNPYEINLMDELTLRGITQYYAFVEEKQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQQHRNRVFHDFRNGVCR 336
[Close]
BLAST of CX287199 vs. ExPASy Swiss-Prot
Match: DHH1_ASPFU (ATP-dependent RNA helicase dhh1 OS=Aspergillus fumigatus GN=dhh1 PE=3 SV=1)

HSP 1 Score: 345.125 bits (884), Expect = 1.774e-94
Identity = 166/212 (78.30%), Postives = 184/212 (86.79%), Query Frame = 3 
Query:    6 RELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACR 641
            RELALQTSQVCK LGKHL I VMVTTGGT L DDI+RL   VH+LVGTPGR+LDL+ KGV  L +C   VMDEADKLLSPEF P +EQL+ F P +RQ+++FSATFP+ VK FKDK+++ PY INLMDELTL+GITQYYAFVEE+QKVHCLNTLFSKLQINQSIIFCNS NRVELLAKKITELGYSCFY HA+MLQ HRNRVFHDFRNG CR
Sbjct:  125 RELALQTSQVCKTLGKHLGINVMVTTGGTGLMDDIIRLNDAVHILVGTPGRVLDLASKGVADLSECPTFVMDEADKLLSPEFTPVIEQLLSFHPKDRQVMLFSATFPLIVKSFKDKHMRNPYEINLMDELTLRGITQYYAFVEEKQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQQHRNRVFHDFRNGVCR 336
[Close]
BLAST of CX287199 vs. ExPASy Swiss-Prot
Match: DHH1_ASPCL (ATP-dependent RNA helicase dhh1 OS=Aspergillus clavatus GN=dhh1 PE=3 SV=1)

HSP 1 Score: 345.125 bits (884), Expect = 1.774e-94
Identity = 166/212 (78.30%), Postives = 184/212 (86.79%), Query Frame = 3 
Query:    6 RELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACR 641
            RELALQTSQVCK LGKHL I VMVTTGGT L DDI+RL   VH+LVGTPGR+LDL+ KGV  L +C   VMDEADKLLSPEF P +EQL+ F P +RQ+++FSATFP+ VK FKDK+++ PY INLMDELTL+GITQYYAFVEE+QKVHCLNTLFSKLQINQSIIFCNS NRVELLAKKITELGYSCFY HA+MLQ HRNRVFHDFRNG CR
Sbjct:  125 RELALQTSQVCKTLGKHLGINVMVTTGGTGLMDDIIRLNDAVHILVGTPGRVLDLASKGVADLSECPTFVMDEADKLLSPEFTPVIEQLLSFHPKDRQVMLFSATFPLIVKSFKDKHMRNPYEINLMDELTLRGITQYYAFVEEKQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQQHRNRVFHDFRNGVCR 336
The following BLAST results are available for this feature:
BLAST of CX287199 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RH8_ORYSJ5.304e-11595.28DEAD-box ATP-dependent RNA helicase 8 OS=Oryza sat... [more]
RH12_ORYSJ2.015e-11493.87DEAD-box ATP-dependent RNA helicase 12 OS=Oryza sa... [more]
RH6_ORYSJ5.864e-11493.87DEAD-box ATP-dependent RNA helicase 6 OS=Oryza sat... [more]
RH8_ARATH1.223e-11192.92DEAD-box ATP-dependent RNA helicase 8 OS=Arabidops... [more]
RH6_ARATH1.952e-10989.62DEAD-box ATP-dependent RNA helicase 6 OS=Arabidops... [more]
RH12_ARATH9.688e-10989.62DEAD-box ATP-dependent RNA helicase 12 OS=Arabidop... [more]
DDX6_DICDI6.959e-9981.60Probable ATP-dependent RNA helicase ddx6 OS=Dictyo... [more]
DHH1_NEOFI1.774e-9478.30ATP-dependent RNA helicase dhh1 OS=Neosartorya fis... [more]
DHH1_ASPFU1.774e-9478.30ATP-dependent RNA helicase dhh1 OS=Aspergillus fum... [more]
DHH1_ASPCL1.774e-9478.30ATP-dependent RNA helicase dhh1 OS=Aspergillus cla... [more]

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Properties
Property NameValue
Genbank descriptionC01005G11SK Veg1 Citrus clementina cDNA clone C01005G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287199 ID=CX287199; Name=CX287199; organism=Citrus clementina; type=EST; length=643bp
CGAGGAGAGAGTTGGCTCTTCAGACATCCCAAGTCTGTAAGGAGCTGGGG
AAGCATTTGAATATTCAAGTCATGGTTACCACTGGTGGAACCAGTCTTAA
GGATGATATTATGCGTTTGTATCAACCTGTTCATTTGCTTGTTGGAACTC
CTGGAAGAATACTAGATCTTTCTAAGAAGGGTGTTTGCATTTTGAAAGAT
TGTTCAATGCTTGTTATGGATGAGGCTGATAAGCTTTTGTCACCAGAGTT
CCAACCTTCAGTAGAGCAGCTTATTCGTTTTCTTCCTGCAAATCGTCAAA
TTTTAATGTTTTCAGCTACTTTCCCTGTTACCGTCAAGGACTTTAAAGAT
AAATACCTACAAAAACCATATGTTATTAATCTGATGGATGAGCTTACTCT
CAAGGGAATTACCCAATACTATGCTTTTGTTGAAGAAAGGCAGAAAGTCC
ACTGCCTCAACACACTTTTCTCTAAGTTGCAAATTAATCAATCTATCATT
TTCTGCAATTCGGTGAATCGGGTTGAACTCCTTGCCAAGAAAATTACAGA
ACTTGGGTACTCTTGTTTTTATATCCATGCAAAGATGCTGCAAGACCATC
GCAACAGAGTATTTCATGACTTCCGCAATGGTGCATGCAGGAA
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