CX287296

Overview
NameCX287296
Unique NameCX287296
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length402
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1356 contig Ccv1_Contig1356:6..407. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287296 vs. ExPASy Swiss-Prot
Match: TCPG_RAT (T-complex protein 1 subunit gamma OS=Rattus norvegicus GN=Cct3 PE=1 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 5.046e-52
Identity = 92/132 (69.70%), Postives = 117/132 (88.64%), Query Frame = 3
Query:    3 KAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPY 398
            +A V+AIRR+RKTDNNRIA+ACGA IV+RP+EL+E DVGTGAGL E+KKIGDE+F FI DCKDPKACT+LLRGASK++L+EVERNLQDAM V RN++ +P+LVPGGGA+E+ V+  L +KS ++ G+E+WPY
Sbjct:  306 RANVTAIRRVRKTDNNRIARACGARIVSRPEELREDDVGTGAGLLEIKKIGDEYFTFITDCKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGVEQWPY 437          
BLAST of CX287296 vs. ExPASy Swiss-Prot
Match: TCPG_MOUSE (T-complex protein 1 subunit gamma OS=Mus musculus GN=Cct3 PE=1 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 5.046e-52
Identity = 92/132 (69.70%), Postives = 117/132 (88.64%), Query Frame = 3
Query:    3 KAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPY 398
            +A V+AIRR+RKTDNNRIA+ACGA IV+RP+EL+E DVGTGAGL E+KKIGDE+F FI DCKDPKACT+LLRGASK++L+EVERNLQDAM V RN++ +P+LVPGGGA+E+ V+  L +KS ++ G+E+WPY
Sbjct:  306 RANVTAIRRVRKTDNNRIARACGARIVSRPEELREDDVGTGAGLLEIKKIGDEYFTFITDCKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGVEQWPY 437          
BLAST of CX287296 vs. ExPASy Swiss-Prot
Match: TCPG_PONAB (T-complex protein 1 subunit gamma OS=Pongo abelii GN=CCT3 PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 6.590e-52
Identity = 91/132 (68.94%), Postives = 117/132 (88.64%), Query Frame = 3
Query:    3 KAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPY 398
            +A ++AIRR+RKTDNNRIA+ACGA IV+RP+EL+E DVGTGAGL E+KKIGDE+F FI DCKDPKACT+LLRGASK++L+EVERNLQDAM V RN++ +P+LVPGGGA+E+ V+  L +KS ++ G+E+WPY
Sbjct:  306 RANITAIRRVRKTDNNRIARACGARIVSRPEELREDDVGTGAGLLEIKKIGDEYFTFITDCKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGVEQWPY 437          
BLAST of CX287296 vs. ExPASy Swiss-Prot
Match: TCPG_HUMAN (T-complex protein 1 subunit gamma OS=Homo sapiens GN=CCT3 PE=1 SV=4)

HSP 1 Score: 202.216 bits (513), Expect = 6.590e-52
Identity = 91/132 (68.94%), Postives = 117/132 (88.64%), Query Frame = 3
Query:    3 KAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPY 398
            +A ++AIRR+RKTDNNRIA+ACGA IV+RP+EL+E DVGTGAGL E+KKIGDE+F FI DCKDPKACT+LLRGASK++L+EVERNLQDAM V RN++ +P+LVPGGGA+E+ V+  L +KS ++ G+E+WPY
Sbjct:  306 RANITAIRRVRKTDNNRIARACGARIVSRPEELREDDVGTGAGLLEIKKIGDEYFTFITDCKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGVEQWPY 437          
BLAST of CX287296 vs. ExPASy Swiss-Prot
Match: TCPG_MACFA (T-complex protein 1 subunit gamma OS=Macaca fascicularis GN=CCT3 PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 1.917e-51
Identity = 90/132 (68.18%), Postives = 117/132 (88.64%), Query Frame = 3
Query:    3 KAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPY 398
            +A ++AIRR+RKTDNNRIA+ACGA IV+RP+EL+E DVGTGAGL E+KKIGDE+F FI +CKDPKACT+LLRGASK++L+EVERNLQDAM V RN++ +P+LVPGGGA+E+ V+  L +KS ++ G+E+WPY
Sbjct:  306 RANITAIRRVRKTDNNRIARACGARIVSRPEELREDDVGTGAGLLEIKKIGDEYFTFITECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGVEQWPY 437          
BLAST of CX287296 vs. ExPASy Swiss-Prot
Match: TCPG_BOVIN (T-complex protein 1 subunit gamma OS=Bos taurus GN=CCT3 PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 1.917e-51
Identity = 90/132 (68.18%), Postives = 117/132 (88.64%), Query Frame = 3
Query:    3 KAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPY 398
            +A ++AIRR+RKTDNNRIA+ACGA IV+RP+EL+E DVGTGAGL E+KKIGDE+F FI +CKDPKACT+LLRGASK++L+EVERNLQDAM V RN++ +P+LVPGGGA+E+ V+  L +KS ++ G+E+WPY
Sbjct:  306 RANITAIRRVRKTDNNRIARACGARIVSRPEELREEDVGTGAGLLEIKKIGDEYFTFITECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGVEQWPY 437          
BLAST of CX287296 vs. ExPASy Swiss-Prot
Match: TCPG_XENLA (T-complex protein 1 subunit gamma OS=Xenopus laevis GN=cct3 PE=2 SV=2)

HSP 1 Score: 198.749 bits (504), Expect = 7.286e-51
Identity = 90/132 (68.18%), Postives = 115/132 (87.12%), Query Frame = 3
Query:    3 KAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPY 398
            KA ++A+RR+RKTDNNRIA+ACGA I +R DEL+E DVGTGAGLFE+KKIGDE+F FI DCKDPKACT++LRGASK++L EVERNLQDAM V RN++ +P LVPGGGA+E++V+  L +KS ++ G+E+WPY
Sbjct:  305 KANITAVRRVRKTDNNRIARACGARIASRTDELREEDVGTGAGLFEIKKIGDEYFTFITDCKDPKACTIVLRGASKEILAEVERNLQDAMQVCRNVVIDPYLVPGGGASEMSVAHILTEKSKTMTGVEQWPY 436          
BLAST of CX287296 vs. ExPASy Swiss-Prot
Match: TCPG_DICDI (T-complex protein 1 subunit gamma OS=Dictyostelium discoideum GN=cct3 PE=1 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 6.820e-49
Identity = 87/133 (65.41%), Postives = 114/133 (85.71%), Query Frame = 3
Query:    3 KAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYE 401
            K G++ +RRL+K++NNRIA+  GA IV+R DELQESD+GTG GLFE++KIGDE+F F+ DCK+PKACT+LLRGASKD+LNEVERNL DA++VARNI+ +P+LVPGGGA E+ +S  L +KS SIEG+ + PY+
Sbjct:  305 KKGITCLRRLKKSENNRIARISGATIVSRTDELQESDIGTGCGLFEIRKIGDEYFTFLEDCKEPKACTILLRGASKDILNEVERNLTDALNVARNIVLDPRLVPGGGAIEMALSQALSEKSKSIEGLHQLPYK 437          
BLAST of CX287296 vs. ExPASy Swiss-Prot
Match: TCPG_SCHPO (T-complex protein 1 subunit gamma OS=Schizosaccharomyces pombe GN=cct3 PE=1 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 2.591e-48
Identity = 86/132 (65.15%), Postives = 111/132 (84.09%), Query Frame = 3
Query:    3 KAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPY 398
            KA ++A+RR RK+DNNRIA+ACGA IVNR ++L+E DVGTG GLF + K+GDE++ F+  CK+PKACT+LLRG SKD++NEVERNLQDAM+VARN+  +PKL PGGGATE+ VS  L +K+ SIEG+ +WPY
Sbjct:  304 KANITALRRTRKSDNNRIARACGANIVNRLEDLREKDVGTGCGLFYIDKLGDEYYTFLTGCKNPKACTILLRGPSKDIINEVERNLQDAMAVARNVFFHPKLSPGGGATEMAVSVRLAEKARSIEGVAQWPY 435          
BLAST of CX287296 vs. ExPASy Swiss-Prot
Match: TCPG_OXYGR (T-complex protein 1 subunit gamma OS=Oxytricha granulifera PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 8.336e-47
Identity = 83/129 (64.34%), Postives = 109/129 (84.50%), Query Frame = 3
Query:   15 SAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYE 401
            + IRR+RKTDNNRIA+  GA I NRP+ELQESDVGT  GLFE+KKIGDE+F+F+  C++PKAC++LLRGASKD+LNE+ERNL DA+ VARN++ NPKLVPGGGA E+ ++  L + S  IEG+++WP++
Sbjct:  312 TVIRRIRKTDNNRIARVTGATIANRPEELQESDVGTKCGLFEIKKIGDEYFSFMTKCENPKACSILLRGASKDVLNEIERNLHDALGVARNVMVNPKLVPGGGAIEMELACRLMEFSQKIEGMQQWPFK 440          
The following BLAST results are available for this feature:
BLAST of CX287296 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
TCPG_RAT5.046e-5269.70T-complex protein 1 subunit gamma OS=Rattus norveg... [more]
TCPG_MOUSE5.046e-5269.70T-complex protein 1 subunit gamma OS=Mus musculus ... [more]
TCPG_PONAB6.590e-5268.94T-complex protein 1 subunit gamma OS=Pongo abelii ... [more]
TCPG_HUMAN6.590e-5268.94T-complex protein 1 subunit gamma OS=Homo sapiens ... [more]
TCPG_MACFA1.917e-5168.18T-complex protein 1 subunit gamma OS=Macaca fascic... [more]
TCPG_BOVIN1.917e-5168.18T-complex protein 1 subunit gamma OS=Bos taurus GN... [more]
TCPG_XENLA7.286e-5168.18T-complex protein 1 subunit gamma OS=Xenopus laevi... [more]
TCPG_DICDI6.820e-4965.41T-complex protein 1 subunit gamma OS=Dictyostelium... [more]
TCPG_SCHPO2.591e-4865.15T-complex protein 1 subunit gamma OS=Schizosacchar... [more]
TCPG_OXYGR8.336e-4764.34T-complex protein 1 subunit gamma OS=Oxytricha gra... [more]

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Properties
Property NameValue
Genbank descriptionC01008A02SK Veg1 Citrus clementina cDNA clone C01008A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287296 ID=CX287296; Name=CX287296; organism=Citrus clementina; type=EST; length=402bp
GCAAGGCTGGCGTTAGTGCAATTAGGAGGCTAAGGAAGACAGACAATAAT
AGAATTGCCAAAGCATGTGGTGCTGTTATTGTGAACAGACCAGATGAATT
GCAGGAATCTGATGTTGGTACTGGGGCTGGGCTGTTTGAGGTTAAGAAAA
TTGGTGATGAATTCTTTGCTTTCATTGTTGATTGCAAAGATCCAAAAGCT
TGTACTGTACTCTTAAGAGGTGCTAGTAAGGATCTCCTGAATGAAGTGGA
AAGAAATTTGCAGGATGCAATGTCTGTGGCAAGAAACATAATCAAGAATC
CAAAACTAGTACCTGGTGGAGGGGCTACAGAATTAACAGTATCTGCCACT
CTAAAACAAAAGAGTTCCTCAATCGAAGGCATCGAAAAGTGGCCTTATGA
AG
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