CX287299

Overview
NameCX287299
Unique NameCX287299
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length368
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3120 contig Ccv1_Contig3120:32..399. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287299 vs. ExPASy Swiss-Prot
Match: PSAD_SOLLC (Photosystem I reaction center subunit II, chloroplastic OS=Solanum lycopersicum GN=psaD PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.813e-26
Identity = 62/116 (53.45%), Postives = 68/116 (58.62%), Query Frame = 2
Query:   20 ISMATQAGLFTPSIITTKTSKLLLNPWXXXXXXXXXXXXXXXXXMAQRTVRXXXXXXXXXXXXXXXXVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMP 367
            ++MATQA LFTP +   K++     PW                    R +R                 GFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMP
Sbjct:    1 MAMATQASLFTPPLSVPKSTTA---PWKQSLVSFSTPKQLKSTVSVTRPIRAMAEEAPAATEEKPAPAGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMP 113          
BLAST of CX287299 vs. ExPASy Swiss-Prot
Match: PSAD_NICSY (Photosystem I reaction center subunit II, chloroplastic OS=Nicotiana sylvestris GN=psaD PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.110e-25
Identity = 65/116 (56.03%), Postives = 71/116 (61.21%), Query Frame = 2
Query:   20 ISMATQAGLFTPSIITTKTSKLLLNPWXXXXXXXXXXXXXXXXXMAQRTVRXXXXXXXXXXXXXXXXVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMP 367
            ++MATQA LFTP++   K+S     PW                  A R +R                VGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMP
Sbjct:    1 MAMATQASLFTPALSAPKSSA----PWKQSLASFSPKQLKSTVS-APRPIRAMAEEAATKEAEAP--VGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMP 109          
BLAST of CX287299 vs. ExPASy Swiss-Prot
Match: PSAD_CUCSA (Photosystem I reaction center subunit II, chloroplastic OS=Cucumis sativus GN=psaD PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.470e-23
Identity = 58/116 (50.00%), Postives = 70/116 (60.34%), Query Frame = 2
Query:   20 ISMATQAGLFTPSIITTKTSKLLLNPWXXXXXXXXXXXXXXXXXMAQRTVRXXXXXXXXXXXXXXXXVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMP 367
            ++MATQA LFTPS+ T K++ + + PW                 +   +                   GF+PP+LDP+TPSPIF GSTGGLLRKAQVEEFYVITWESPKEQIFEMP
Sbjct:    1 MAMATQATLFTPSLSTPKSTGISI-PWKQSSTLSFLTSKPH---LKAASSSRSFKVSAEAETSVEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMP 112          
BLAST of CX287299 vs. ExPASy Swiss-Prot
Match: PSAD2_ARATH (Photosystem I reaction center subunit II-2, chloroplastic OS=Arabidopsis thaliana GN=psaD2 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.170e-22
Identity = 47/49 (95.92%), Postives = 47/49 (95.92%), Query Frame = 2
Query:  221 VGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMP 367
            VGFTPPQLDPNTPSPIF GSTGGLLRKAQVEEFYVITW SPKEQIFEMP
Sbjct:   61 VGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMP 109          
BLAST of CX287299 vs. ExPASy Swiss-Prot
Match: PSAD1_ARATH (Photosystem I reaction center subunit II-1, chloroplastic OS=Arabidopsis thaliana GN=psaD1 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.170e-22
Identity = 47/49 (95.92%), Postives = 47/49 (95.92%), Query Frame = 2
Query:  221 VGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMP 367
            VGFTPPQLDPNTPSPIF GSTGGLLRKAQVEEFYVITW SPKEQIFEMP
Sbjct:   65 VGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMP 113          
BLAST of CX287299 vs. ExPASy Swiss-Prot
Match: PSAD_SPIOL (Photosystem I reaction center subunit II, chloroplastic OS=Spinacia oleracea GN=psaD PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 1.223e-21
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 2
Query:  224 GFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMP 367
            GFTPP+LDPNTPSPIF GSTGGLLRKAQVEEFYVITWESPKEQIFEMP
Sbjct:   70 GFTPPELDPNTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMP 117          
BLAST of CX287299 vs. ExPASy Swiss-Prot
Match: PSAD_HORVU (Photosystem I reaction center subunit II, chloroplastic OS=Hordeum vulgare GN=psaD PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.035e-20
Identity = 44/48 (91.67%), Postives = 46/48 (95.83%), Query Frame = 2
Query:  224 GFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMP 367
            GF PPQLDP+TPSPIFGGSTGGLLRKAQVEEFYVITW SPKEQ+FEMP
Sbjct:   63 GFVPPQLDPSTPSPIFGGSTGGLLRKAQVEEFYVITWTSPKEQVFEMP 110          
BLAST of CX287299 vs. ExPASy Swiss-Prot
Match: PSAD_CHLRE (Photosystem I reaction center subunit II, chloroplastic OS=Chlamydomonas reinhardtii GN=psaD PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.070e-17
Identity = 39/47 (82.98%), Postives = 43/47 (91.49%), Query Frame = 2
Query:  227 FTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMP 367
            +T P L+P+TPSPIFGGSTGGLLRKAQ EEFYVITWE+ KEQIFEMP
Sbjct:   53 WTVPTLNPDTPSPIFGGSTGGLLRKAQTEEFYVITWEAKKEQIFEMP 99          
BLAST of CX287299 vs. ExPASy Swiss-Prot
Match: PSAD_CYAPA (Photosystem I reaction center subunit II, cyanelle OS=Cyanophora paradoxa GN=psaD PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.019e-12
Identity = 31/47 (65.96%), Postives = 37/47 (78.72%), Query Frame = 2
Query:  227 FTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMP 367
            F+ P L+ N P+PIFGGSTGGLLRKA+VEEFY ITW    E +FE+P
Sbjct:   74 FSVPTLNLNAPTPIFGGSTGGLLRKAEVEEFYSITWTGKSETVFELP 120          
BLAST of CX287299 vs. ExPASy Swiss-Prot
Match: PSAD_MASLA (Photosystem I reaction center subunit II OS=Mastigocladus laminosus GN=psaD PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.360e-11
Identity = 29/36 (80.56%), Postives = 33/36 (91.67%), Query Frame = 2
Query:  260 SPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMP 367
            +PIFGGSTGGLL+KA+VEE Y ITW SPKEQ+FEMP
Sbjct:    9 TPIFGGSTGGLLKKAEVEEKYAITWTSPKEQVFEMP 44          
The following BLAST results are available for this feature:
BLAST of CX287299 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
PSAD_SOLLC2.813e-2653.45Photosystem I reaction center subunit II, chloropl... [more]
PSAD_NICSY3.110e-2556.03Photosystem I reaction center subunit II, chloropl... [more]
PSAD_CUCSA8.470e-2350.00Photosystem I reaction center subunit II, chloropl... [more]
PSAD2_ARATH7.170e-2295.92Photosystem I reaction center subunit II-2, chloro... [more]
PSAD1_ARATH7.170e-2295.92Photosystem I reaction center subunit II-1, chloro... [more]
PSAD_SPIOL1.223e-2195.83Photosystem I reaction center subunit II, chloropl... [more]
PSAD_HORVU1.035e-2091.67Photosystem I reaction center subunit II, chloropl... [more]
PSAD_CHLRE9.070e-1782.98Photosystem I reaction center subunit II, chloropl... [more]
PSAD_CYAPA3.019e-1265.96Photosystem I reaction center subunit II, cyanelle... [more]
PSAD_MASLA4.360e-1180.56Photosystem I reaction center subunit II OS=Mastig... [more]
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Properties
Property NameValue
Genbank descriptionC01008A05SK Veg1 Citrus clementina cDNA clone C01008A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287299 ID=CX287299; Name=CX287299; organism=Citrus clementina; type=EST; length=368bp
GCTAACTCGAAAATCTACAATTTCCATGGCAACCCAAGCAGGCCTCTTTA
CCCCAAGTATTATCACCACCAAAACAAGCAAGCTTCTTTTGAACCCATGG
AAGCCAACCTCATCCTTTTCATTCACCAGTCCCAAACCCCTCACCTTCTC
CATGGCTCAAAGAACCGTCAGAGCCGCAGCCGCCGAAGAAAAAACCGAAG
CACCCACGAAGGAGGCTCCAGTAGGCTTCACCCCACCGCAGCTAGACCCA
AACACCCCATCCCCAATCTTTGGAGGAAGCACTGGGGGATTGTTGAGAAA
GGCCCAAGTTGAAGAATTCTATGTCATCACATGGGAGTCGCCAAAGGAAC
AAATCTTTGAGATGCCGA
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