CX287299
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX287299 vs. ExPASy Swiss-Prot
Match: PSAD_SOLLC (Photosystem I reaction center subunit II, chloroplastic OS=Solanum lycopersicum GN=psaD PE=2 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 2.813e-26 Identity = 62/116 (53.45%), Postives = 68/116 (58.62%), Query Frame = 2 Query: 20 ISMATQAGLFTPSIITTKTSKLLLNPWXXXXXXXXXXXXXXXXXMAQRTVRXXXXXXXXXXXXXXXXVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMP 367 ++MATQA LFTP + K++ PW R +R GFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMP Sbjct: 1 MAMATQASLFTPPLSVPKSTTA---PWKQSLVSFSTPKQLKSTVSVTRPIRAMAEEAPAATEEKPAPAGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMP 113
BLAST of CX287299 vs. ExPASy Swiss-Prot
Match: PSAD_NICSY (Photosystem I reaction center subunit II, chloroplastic OS=Nicotiana sylvestris GN=psaD PE=2 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 3.110e-25 Identity = 65/116 (56.03%), Postives = 71/116 (61.21%), Query Frame = 2 Query: 20 ISMATQAGLFTPSIITTKTSKLLLNPWXXXXXXXXXXXXXXXXXMAQRTVRXXXXXXXXXXXXXXXXVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMP 367 ++MATQA LFTP++ K+S PW A R +R VGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMP Sbjct: 1 MAMATQASLFTPALSAPKSSA----PWKQSLASFSPKQLKSTVS-APRPIRAMAEEAATKEAEAP--VGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMP 109
BLAST of CX287299 vs. ExPASy Swiss-Prot
Match: PSAD_CUCSA (Photosystem I reaction center subunit II, chloroplastic OS=Cucumis sativus GN=psaD PE=1 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 8.470e-23 Identity = 58/116 (50.00%), Postives = 70/116 (60.34%), Query Frame = 2 Query: 20 ISMATQAGLFTPSIITTKTSKLLLNPWXXXXXXXXXXXXXXXXXMAQRTVRXXXXXXXXXXXXXXXXVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMP 367 ++MATQA LFTPS+ T K++ + + PW + + GF+PP+LDP+TPSPIF GSTGGLLRKAQVEEFYVITWESPKEQIFEMP Sbjct: 1 MAMATQATLFTPSLSTPKSTGISI-PWKQSSTLSFLTSKPH---LKAASSSRSFKVSAEAETSVEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMP 112
BLAST of CX287299 vs. ExPASy Swiss-Prot
Match: PSAD2_ARATH (Photosystem I reaction center subunit II-2, chloroplastic OS=Arabidopsis thaliana GN=psaD2 PE=1 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 7.170e-22 Identity = 47/49 (95.92%), Postives = 47/49 (95.92%), Query Frame = 2 Query: 221 VGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMP 367 VGFTPPQLDPNTPSPIF GSTGGLLRKAQVEEFYVITW SPKEQIFEMP Sbjct: 61 VGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMP 109
BLAST of CX287299 vs. ExPASy Swiss-Prot
Match: PSAD1_ARATH (Photosystem I reaction center subunit II-1, chloroplastic OS=Arabidopsis thaliana GN=psaD1 PE=1 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 7.170e-22 Identity = 47/49 (95.92%), Postives = 47/49 (95.92%), Query Frame = 2 Query: 221 VGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMP 367 VGFTPPQLDPNTPSPIF GSTGGLLRKAQVEEFYVITW SPKEQIFEMP Sbjct: 65 VGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMP 113
BLAST of CX287299 vs. ExPASy Swiss-Prot
Match: PSAD_SPIOL (Photosystem I reaction center subunit II, chloroplastic OS=Spinacia oleracea GN=psaD PE=1 SV=2) HSP 1 Score: 101.679 bits (252), Expect = 1.223e-21 Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 2 Query: 224 GFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMP 367 GFTPP+LDPNTPSPIF GSTGGLLRKAQVEEFYVITWESPKEQIFEMP Sbjct: 70 GFTPPELDPNTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMP 117
BLAST of CX287299 vs. ExPASy Swiss-Prot
Match: PSAD_HORVU (Photosystem I reaction center subunit II, chloroplastic OS=Hordeum vulgare GN=psaD PE=1 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 1.035e-20 Identity = 44/48 (91.67%), Postives = 46/48 (95.83%), Query Frame = 2 Query: 224 GFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMP 367 GF PPQLDP+TPSPIFGGSTGGLLRKAQVEEFYVITW SPKEQ+FEMP Sbjct: 63 GFVPPQLDPSTPSPIFGGSTGGLLRKAQVEEFYVITWTSPKEQVFEMP 110
BLAST of CX287299 vs. ExPASy Swiss-Prot
Match: PSAD_CHLRE (Photosystem I reaction center subunit II, chloroplastic OS=Chlamydomonas reinhardtii GN=psaD PE=1 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 9.070e-17 Identity = 39/47 (82.98%), Postives = 43/47 (91.49%), Query Frame = 2 Query: 227 FTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMP 367 +T P L+P+TPSPIFGGSTGGLLRKAQ EEFYVITWE+ KEQIFEMP Sbjct: 53 WTVPTLNPDTPSPIFGGSTGGLLRKAQTEEFYVITWEAKKEQIFEMP 99
BLAST of CX287299 vs. ExPASy Swiss-Prot
Match: PSAD_CYAPA (Photosystem I reaction center subunit II, cyanelle OS=Cyanophora paradoxa GN=psaD PE=2 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 3.019e-12 Identity = 31/47 (65.96%), Postives = 37/47 (78.72%), Query Frame = 2 Query: 227 FTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMP 367 F+ P L+ N P+PIFGGSTGGLLRKA+VEEFY ITW E +FE+P Sbjct: 74 FSVPTLNLNAPTPIFGGSTGGLLRKAEVEEFYSITWTGKSETVFELP 120
BLAST of CX287299 vs. ExPASy Swiss-Prot
Match: PSAD_MASLA (Photosystem I reaction center subunit II OS=Mastigocladus laminosus GN=psaD PE=3 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 4.360e-11 Identity = 29/36 (80.56%), Postives = 33/36 (91.67%), Query Frame = 2 Query: 260 SPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMP 367 +PIFGGSTGGLL+KA+VEE Y ITW SPKEQ+FEMP Sbjct: 9 TPIFGGSTGGLLKKAEVEEKYAITWTSPKEQVFEMP 44 The following BLAST results are available for this feature:
BLAST of CX287299 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 10
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX287299 ID=CX287299; Name=CX287299; organism=Citrus clementina; type=EST; length=368bpback to top |