CX287341

Overview
NameCX287341
Unique NameCX287341
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length400
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX287341_ssr1 microsatellite CX287341_ssr1:1..28. BLAST: Citrus ESTs to Prunus persica proteins V1
CX287341_ssr70 microsatellite CX287341_ssr70:70..84. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14898 contig Ccv1_Contig14898:13..412. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287341 vs. ExPASy Swiss-Prot
Match: NFYC1_ARATH (Nuclear transcription factor Y subunit C-1 OS=Arabidopsis thaliana GN=NFYC1 PE=1 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 2.189e-55
Identity = 106/123 (86.18%), Postives = 110/123 (89.43%), Query Frame = 1
Query:   31 ARGATAPFHHLIXXXXXXXXMFWSYQRQEIEQANDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKD 399
            A G  A +HHL+        +FW+YQRQEIEQ NDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKD
Sbjct:   26 AAGGGASYHHLLQQQQQQLQLFWTYQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKD 148          
BLAST of CX287341 vs. ExPASy Swiss-Prot
Match: NFYC4_ARATH (Nuclear transcription factor Y subunit C-4 OS=Arabidopsis thaliana GN=NFYC4 PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 1.853e-54
Identity = 104/121 (85.95%), Postives = 109/121 (90.08%), Query Frame = 1
Query:   37 GATAPFHHLIXXXXXXXXMFWSYQRQEIEQANDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKD 399
            G  A +HHL+        MFW+YQRQEIEQ NDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPR+EIK+
Sbjct:   41 GGGATYHHLLQQQQQQLQMFWTYQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREEIKE 161          
BLAST of CX287341 vs. ExPASy Swiss-Prot
Match: NFYC2_ARATH (Nuclear transcription factor Y subunit C-2 OS=Arabidopsis thaliana GN=NFYC2 PE=1 SV=2)

HSP 1 Score: 182.185 bits (461), Expect = 7.057e-46
Identity = 86/115 (74.78%), Postives = 98/115 (85.22%), Query Frame = 1
Query:   55 HHLIXXXXXXXXMFWSYQRQEIEQANDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKD 399
            HH          MFW+ Q QEIE   DFKNH LPLARIKKIMKADEDVRMISAEAP++FAKACE+FILELT+R+W+H EENKRRTLQKNDIAAAI+RTD+FDFLVDI+PRDE+K+
Sbjct:   45 HHHQQQQQQQLQMFWANQMQEIEHTTDFKNHTLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRAWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKE 159          
BLAST of CX287341 vs. ExPASy Swiss-Prot
Match: NFYC9_ARATH (Nuclear transcription factor Y subunit C-9 OS=Arabidopsis thaliana GN=NFYC9 PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 1.127e-43
Identity = 82/102 (80.39%), Postives = 94/102 (92.16%), Query Frame = 1
Query:   94 FWSYQRQEIEQANDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKD 399
            FW  Q +EIE+  DFKNH LPLARIKKIMKADEDVRMISAEAP++FA+ACE+FILELT+RSW H EENKRRTLQKNDIAAA+TRTDIFDFLVDIVPR++++D
Sbjct:   62 FWENQFKEIEKTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAVTRTDIFDFLVDIVPREDLRD 163          
BLAST of CX287341 vs. ExPASy Swiss-Prot
Match: NFYC3_ARATH (Nuclear transcription factor Y subunit C-3 OS=Arabidopsis thaliana GN=NFYC3 PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 1.127e-43
Identity = 82/102 (80.39%), Postives = 94/102 (92.16%), Query Frame = 1
Query:   94 FWSYQRQEIEQANDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKD 399
            FW  Q +EIE+  DFKNH LPLARIKKIMKADEDVRMISAEAP++FA+ACE+FILELT+RSW H EENKRRTLQKNDIAAA+TRTDIFDFLVDIVPR++++D
Sbjct:   52 FWETQFKEIEKTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAVTRTDIFDFLVDIVPREDLRD 153          
BLAST of CX287341 vs. ExPASy Swiss-Prot
Match: NFYC_DICDI (Nuclear transcription factor Y subunit gamma OS=Dictyostelium discoideum GN=nfyc-1 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 2.782e-34
Identity = 66/101 (65.35%), Postives = 84/101 (83.17%), Query Frame = 1
Query:   94 FWSYQRQEIEQANDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIK 396
            FWS Q ++I +  DFK H+LPLARIKKIMK+D+DV  IS+EAPILFAKACE+ ILE+T RSW+H E NKRRTLQ+ DI  +++R + FDFL+D++PRDEIK
Sbjct:  252 FWSSQLRDIHKTEDFKTHELPLARIKKIMKSDKDVNKISSEAPILFAKACEILILEMTHRSWVHTEMNKRRTLQRTDIINSLSRCETFDFLIDMLPRDEIK 352          
BLAST of CX287341 vs. ExPASy Swiss-Prot
Match: NFYC_RAT (Nuclear transcription factor Y subunit gamma OS=Rattus norvegicus GN=Nfyc PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 4.745e-34
Identity = 69/103 (66.99%), Postives = 84/103 (81.55%), Query Frame = 1
Query:   94 FWSYQRQEIEQ--ANDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIK 396
            FW    +EI      DF+  +LPLARIKKIMK DEDV+MISAEAP+LFAKA ++FI ELT+R+W+H E+NKRRTLQ+NDIA AIT+ D FDFL+DIVPRDE+K
Sbjct:   22 FWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPRDELK 124          
BLAST of CX287341 vs. ExPASy Swiss-Prot
Match: NFYC_PONAB (Nuclear transcription factor Y subunit gamma OS=Pongo abelii GN=NFYC PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 4.745e-34
Identity = 69/103 (66.99%), Postives = 84/103 (81.55%), Query Frame = 1
Query:   94 FWSYQRQEIEQ--ANDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIK 396
            FW    +EI      DF+  +LPLARIKKIMK DEDV+MISAEAP+LFAKA ++FI ELT+R+W+H E+NKRRTLQ+NDIA AIT+ D FDFL+DIVPRDE+K
Sbjct:   22 FWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPRDELK 124          
BLAST of CX287341 vs. ExPASy Swiss-Prot
Match: NFYC_MOUSE (Nuclear transcription factor Y subunit gamma OS=Mus musculus GN=Nfyc PE=2 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 4.745e-34
Identity = 69/103 (66.99%), Postives = 84/103 (81.55%), Query Frame = 1
Query:   94 FWSYQRQEIEQ--ANDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIK 396
            FW    +EI      DF+  +LPLARIKKIMK DEDV+MISAEAP+LFAKA ++FI ELT+R+W+H E+NKRRTLQ+NDIA AIT+ D FDFL+DIVPRDE+K
Sbjct:   22 FWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPRDELK 124          
BLAST of CX287341 vs. ExPASy Swiss-Prot
Match: NFYC_HUMAN (Nuclear transcription factor Y subunit gamma OS=Homo sapiens GN=NFYC PE=1 SV=3)

HSP 1 Score: 142.895 bits (359), Expect = 4.745e-34
Identity = 69/103 (66.99%), Postives = 84/103 (81.55%), Query Frame = 1
Query:   94 FWSYQRQEIEQ--ANDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIK 396
            FW    +EI      DF+  +LPLARIKKIMK DEDV+MISAEAP+LFAKA ++FI ELT+R+W+H E+NKRRTLQ+NDIA AIT+ D FDFL+DIVPRDE+K
Sbjct:   22 FWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPRDELK 124          
The following BLAST results are available for this feature:
BLAST of CX287341 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
NFYC1_ARATH2.189e-5586.18Nuclear transcription factor Y subunit C-1 OS=Arab... [more]
NFYC4_ARATH1.853e-5485.95Nuclear transcription factor Y subunit C-4 OS=Arab... [more]
NFYC2_ARATH7.057e-4674.78Nuclear transcription factor Y subunit C-2 OS=Arab... [more]
NFYC9_ARATH1.127e-4380.39Nuclear transcription factor Y subunit C-9 OS=Arab... [more]
NFYC3_ARATH1.127e-4380.39Nuclear transcription factor Y subunit C-3 OS=Arab... [more]
NFYC_DICDI2.782e-3465.35Nuclear transcription factor Y subunit gamma OS=Di... [more]
NFYC_RAT4.745e-3466.99Nuclear transcription factor Y subunit gamma OS=Ra... [more]
NFYC_PONAB4.745e-3466.99Nuclear transcription factor Y subunit gamma OS=Po... [more]
NFYC_MOUSE4.745e-3466.99Nuclear transcription factor Y subunit gamma OS=Mu... [more]
NFYC_HUMAN4.745e-3466.99Nuclear transcription factor Y subunit gamma OS=Ho... [more]

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Properties
Property NameValue
Genbank descriptionC01008E03SK Veg1 Citrus clementina cDNA clone C01008E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287341 ID=CX287341; Name=CX287341; organism=Citrus clementina; type=EST; length=400bp
TCTCTCTCTCTCTCTCTCTCTCTCTCTCCGGCACGAGGCGCAACGGCGCC
GTTTCATCACCTAATCCAACAGCAGCAGCAGCAGCTCCAAATGTTCTGGT
CCTACCAGCGGCAAGAAATCGAACAAGCGAACGACTTCAAGAACCACCAG
CTGCCGCTCGCCCGCATCAAGAAAATCATGAAGGCCGACGAGGACGTTCG
CATGATCTCCGCCGAGGCCCCGATTCTGTTCGCCAAGGCCTGCGAGTTGT
TCATCCTCGAGCTCACGATCCGCTCGTGGCTCCACGCCGAGGAGAACAAG
CGCAGGACTCTACAGAAGAACGACATCGCGGCCGCCATCACCAGGACCGA
CATCTTCGACTTCTTGGTCGATATTGTGCCTAGGGATGAGATTAAGGACG
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