CX287343

Overview
NameCX287343
Unique NameCX287343
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length410
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX287343_ssr133 microsatellite CX287343_ssr133:133..150. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig473 contig Ccv1_Contig473:9..418. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287343 vs. ExPASy Swiss-Prot
Match: SMT3_ARATH (Ubiquitin-like protein SMT3 OS=Arabidopsis thaliana GN=SMT3 PE=1 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 1.114e-38
Identity = 77/84 (91.67%), Postives = 80/84 (95.24%), Query Frame = 1
Query:  157 QEEDKKPVDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAML 408
            QEEDKKP D  AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSV++NSIAFLFDGRRLR EQTPDEL+MEDGDEIDAML
Sbjct:    5 QEEDKKPGDGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNSIAFLFDGRRLRAEQTPDELDMEDGDEIDAML 88          
BLAST of CX287343 vs. ExPASy Swiss-Prot
Match: SMT3_ORYSJ (Ubiquitin-like protein SMT3 OS=Oryza sativa subsp. japonica GN=SMT3 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.043e-36
Identity = 76/86 (88.37%), Postives = 79/86 (91.86%), Query Frame = 1
Query:  160 EEDKKPVDQS---AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAML 408
            EEDKKP       AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSV++N+IAFLFDGRRLRGEQTPDELEMEDGDEIDAML
Sbjct:    6 EEDKKPAGGEGGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNAIAFLFDGRRLRGEQTPDELEMEDGDEIDAML 91          
BLAST of CX287343 vs. ExPASy Swiss-Prot
Match: PMT3_SCHPO (Ubiquitin-like protein pmt3/smt3 OS=Schizosaccharomyces pombe GN=pmt3 PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 9.479e-22
Identity = 48/83 (57.83%), Postives = 63/83 (75.90%), Query Frame = 1
Query:  160 EEDKKPVDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAML 408
            ++D KP   + HINLKV GQD NEVFF+IK++T+  KLM  YC RQ   +NS+ FL DG R+R +QTP EL+MEDGD+I+A+L
Sbjct:   26 QQDVKP--STEHINLKVVGQDNNEVFFKIKKTTEFSKLMKIYCARQGKSMNSLRFLVDGERIRPDQTPAELDMEDGDQIEAVL 106          
BLAST of CX287343 vs. ExPASy Swiss-Prot
Match: SUMO3_XENTR (Small ubiquitin-related modifier 3 OS=Xenopus tropicalis GN=sumo3 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.029e-17
Identity = 44/82 (53.66%), Postives = 56/82 (68.29%), Query Frame = 1
Query:  157 QEEDKKPVD-QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEID 399
            +E+ K+ V  ++ HINLKV GQDG+ V F+IKR T L KLM AYCDRQ + +  I F FDG+ +    TP +LEMED D ID
Sbjct:    3 EEKPKEGVKTENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCDRQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTID 84          
BLAST of CX287343 vs. ExPASy Swiss-Prot
Match: SUMO3_XENLA (Small ubiquitin-related modifier 3 OS=Xenopus laevis GN=sumo3 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.029e-17
Identity = 44/82 (53.66%), Postives = 56/82 (68.29%), Query Frame = 1
Query:  157 QEEDKKPVD-QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEID 399
            +E+ K+ V  ++ HINLKV GQDG+ V F+IKR T L KLM AYCDRQ + +  I F FDG+ +    TP +LEMED D ID
Sbjct:    3 EEKPKEGVKTENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCDRQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTID 84          
BLAST of CX287343 vs. ExPASy Swiss-Prot
Match: SUMO2_RAT (Small ubiquitin-related modifier 2 OS=Rattus norvegicus GN=Sumo2 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.566e-16
Identity = 43/83 (51.81%), Postives = 54/83 (65.06%), Query Frame = 1
Query:  166 DKKP-----VDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEID 399
            D+KP      + + HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID
Sbjct:    3 DEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTID 85          
BLAST of CX287343 vs. ExPASy Swiss-Prot
Match: SUMO2_PIG (Small ubiquitin-related modifier 2 OS=Sus scrofa GN=SUMO2 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.566e-16
Identity = 43/83 (51.81%), Postives = 54/83 (65.06%), Query Frame = 1
Query:  166 DKKP-----VDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEID 399
            D+KP      + + HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID
Sbjct:    3 DEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTID 85          
BLAST of CX287343 vs. ExPASy Swiss-Prot
Match: SUMO2_MOUSE (Small ubiquitin-related modifier 2 OS=Mus musculus GN=Sumo2 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.566e-16
Identity = 43/83 (51.81%), Postives = 54/83 (65.06%), Query Frame = 1
Query:  166 DKKP-----VDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEID 399
            D+KP      + + HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID
Sbjct:    3 DEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTID 85          
BLAST of CX287343 vs. ExPASy Swiss-Prot
Match: SUMO2_MACFA (Small ubiquitin-related modifier 2 OS=Macaca fascicularis GN=SUMO2 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.566e-16
Identity = 43/83 (51.81%), Postives = 54/83 (65.06%), Query Frame = 1
Query:  166 DKKP-----VDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEID 399
            D+KP      + + HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID
Sbjct:    3 DEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTID 85          
BLAST of CX287343 vs. ExPASy Swiss-Prot
Match: SUMO2_HUMAN (Small ubiquitin-related modifier 2 OS=Homo sapiens GN=SUMO2 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.566e-16
Identity = 43/83 (51.81%), Postives = 54/83 (65.06%), Query Frame = 1
Query:  166 DKKP-----VDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEID 399
            D+KP      + + HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID
Sbjct:    3 DEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTID 85          
The following BLAST results are available for this feature:
BLAST of CX287343 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
SMT3_ARATH1.114e-3891.67Ubiquitin-like protein SMT3 OS=Arabidopsis thalian... [more]
SMT3_ORYSJ1.043e-3688.37Ubiquitin-like protein SMT3 OS=Oryza sativa subsp.... [more]
PMT3_SCHPO9.479e-2257.83Ubiquitin-like protein pmt3/smt3 OS=Schizosaccharo... [more]
SUMO3_XENTR7.029e-1753.66Small ubiquitin-related modifier 3 OS=Xenopus trop... [more]
SUMO3_XENLA7.029e-1753.66Small ubiquitin-related modifier 3 OS=Xenopus laev... [more]
SUMO2_RAT1.566e-1651.81Small ubiquitin-related modifier 2 OS=Rattus norve... [more]
SUMO2_PIG1.566e-1651.81Small ubiquitin-related modifier 2 OS=Sus scrofa G... [more]
SUMO2_MOUSE1.566e-1651.81Small ubiquitin-related modifier 2 OS=Mus musculus... [more]
SUMO2_MACFA1.566e-1651.81Small ubiquitin-related modifier 2 OS=Macaca fasci... [more]
SUMO2_HUMAN1.566e-1651.81Small ubiquitin-related modifier 2 OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionC01008E05SK Veg1 Citrus clementina cDNA clone C01008E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287343 ID=CX287343; Name=CX287343; organism=Citrus clementina; type=EST; length=410bp
TGCTCTTATAGTGTCGGTTTTTTGTACTTATTTGTAGTCGCAGGGGGGAC
GACAAAACCCTAACCAGAGGCGCAGAAAGAAAGAGAGGGTAAAATTCAAT
TCTAACAACCTGTAAGGATGTCAGCAACTGGTGGCGGCGGCGGCGGCGGC
GGTGGTCAGGAGGAGGACAAGAAGCCCGTCGATCAGTCGGCGCACATTAA
CCTCAAAGTCAAGGGCCAGGATGGCAATGAGGTATTTTTTAGAATTAAGC
GAAGCACCCAGTTGAAAAAGCTCATGAATGCCTACTGTGATCGGCAGTCG
GTGGAGTTAAACTCTATTGCTTTCTTGTTTGATGGGCGGAGACTCCGAGG
AGAGCAGACTCCAGATGAGCTTGAGATGGAGGATGGAGATGAAATTGATG
CAATGCTGCA
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