CX287435

Overview
NameCX287435
Unique NameCX287435
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length555
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX287435 vs. ExPASy Swiss-Prot
Match: HT1_ARATH (Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana GN=HT1 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.662e-12
Identity = 32/58 (55.17%), Postives = 38/58 (65.52%), Query Frame = -1 
Query:  382 LPFQNMTAVQAAFAVVNKGARPIIPNDCLPVLGEIMTRCWDANPDVRPPFAEVVAMLE 555
            LPFQ MT VQAAFAV  K  RP +P  C P L  ++ RCW  NP  RP F+ +VA+LE
Sbjct:  284 LPFQGMTPVQAAFAVAEKNERPPLPASCQPALAHLIKRCWSENPSKRPDFSNIVAVLE 341
The following BLAST results are available for this feature:
BLAST of CX287435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
HT1_ARATH1.662e-1255.17Serine/threonine-protein kinase HT1 OS=Arabidopsis... [more]
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Properties
Property NameValue
Genbank descriptionC01009E07SK Veg1 Citrus clementina cDNA clone C01009E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287435 ID=CX287435; Name=CX287435; organism=Citrus clementina; type=EST; length=555bp
GAGTTTTTTTTTTTTTTTTTTAGACAATGCAGGCATGTATACATAGACAT
CAAATATCCACATCACAATGCTAATTTAGCAACATAATATCCACTGGATA
GAAACCCCAGTAAACACAGACTTCTTTATCATAACTTTTGTCATTCTGTT
TTTGCTATCTTAAGAAAGAACTTAAAACCTGATAAATACACAAGGCTAAG
ATAAAATCATAATCCCTCTGCTTTCTTTCCCTTGTCTTCCTCTGTTCTTT
TGGGCTTCTTTTTGGATTCTTTTTAATTTACATCTTTTGTCCCCTGGAGA
TCAGTCAGTTGTCATTGGTTGTGTAATACAGCACCTGAAACGGGCCTTGC
GGACAGTTGTCATGATTTCTGTCTCCGCATGCTCGAGCATTGCGACAACT
TCAGCGAATGGTGGCCTGACATCAGGGTTGGCATCCCAGCACCGCGTCAT
AATCTCACCAAGAACAGGTAGACAATCATTAGGAATGATCGGGCGTGCGC
CCTTGTTGACAACTGCAAATGCTGCCTGCACCGCTGTCATGTTCTGGAAC
GGAAG
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