CX287439

Overview
NameCX287439
Unique NameCX287439
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length595
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5796 contig Ccv1_Contig5796:908..1502. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287439 vs. ExPASy Swiss-Prot
Match: G3PA_SPIOL (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Spinacia oleracea GN=GAPA PE=1 SV=2)

HSP 1 Score: 174.481 bits (441), Expect = 3.545e-43
Identity = 94/136 (69.12%), Postives = 96/136 (70.59%), Query Frame = -3
Query:  186 AAALNIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 593
            AA LNIVPTST                LNGIALRVPTPN         VSKKTFAEEVNAAFRESADNELKGILSVCDEPLVS+DFRC             VMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN W+
Sbjct:  266 AACLNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSIDFRCTDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANKWQ 401          
BLAST of CX287439 vs. ExPASy Swiss-Prot
Match: G3PA_ARATH (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Arabidopsis thaliana GN=GAPA PE=1 SV=3)

HSP 1 Score: 173.711 bits (439), Expect = 6.048e-43
Identity = 94/136 (69.12%), Postives = 96/136 (70.59%), Query Frame = -3
Query:  186 AAALNIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 593
            AAALNIVPTST                LNGIALRVPTPN         VSKKTFAEEVNAAFR+SA+ ELKGIL VCDEPLVSVDFRC             VMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK
Sbjct:  261 AAALNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRDSAEKELKGILDVCDEPLVSVDFRCSDFSTTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 396          
BLAST of CX287439 vs. ExPASy Swiss-Prot
Match: G3PA_SINAL (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Sinapis alba GN=GAPA PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.347e-42
Identity = 93/136 (68.38%), Postives = 96/136 (70.59%), Query Frame = -3
Query:  186 AAALNIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 593
            AAALNIVPTST                LNGIALRVPTPN         VSKKTFAEEVNAAFR++A+ ELKGIL VCDEPLVSVDFRC             VMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK
Sbjct:   98 AAALNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRDAAEKELKGILDVCDEPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 233          
BLAST of CX287439 vs. ExPASy Swiss-Prot
Match: G3PA_PEA (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Pisum sativum GN=GAPA PE=2 SV=2)

HSP 1 Score: 169.474 bits (428), Expect = 1.141e-41
Identity = 93/136 (68.38%), Postives = 94/136 (69.12%), Query Frame = -3
Query:  186 AAALNIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 593
            AAALNIVPTST                LNGIALRVPTPN         VSKKTFAEEVN AFRESA  EL GILSVCDEPLVSVDFRC             VMGDD+VKVIAWYDNEWGYSQRVVDLADIVANNWK
Sbjct:  270 AAALNIVPTSTGAAKAVALVLPTLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNEAFRESAAKELTGILSVCDEPLVSVDFRCTDVSSTVDSSLTMVMGDDLVKVIAWYDNEWGYSQRVVDLADIVANNWK 405          
BLAST of CX287439 vs. ExPASy Swiss-Prot
Match: G3PA_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GAPA PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 2.809e-40
Identity = 89/136 (65.44%), Postives = 91/136 (66.91%), Query Frame = -3
Query:  186 AAALNIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 593
            AAALNIVPTST                   + LRVPTPN         VSKKTFAEEVNAAFRE+AD ELKGIL VCDEPLVSVDFRC             VMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN WK
Sbjct:  257 AAALNIVPTSTGAAKAVALSSQALRGSSMALPLRVPTPNVSVVDLVVQVSKKTFAEEVNAAFREAADKELKGILDVCDEPLVSVDFRCSDVSSTVDASLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANQWK 392          
BLAST of CX287439 vs. ExPASy Swiss-Prot
Match: G3PA_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Zea mays GN=GAPA PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.013e-38
Identity = 87/136 (63.97%), Postives = 90/136 (66.18%), Query Frame = -3
Query:  186 AAALNIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 593
            AAALNIVPTST                LNGIALRVPTPN         VSKKT AEEVN AFR++A NEL GIL VCD PLVSVDFRC             VMGDDMVKVI+WYDNEWGYSQRVVDLADI AN WK
Sbjct:  268 AAALNIVPTSTGAAKAVSLVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTLAEEVNQAFRDAAANELTGILEVCDVPLVSVDFRCSDVSSTIDASLTMVMGDDMVKVISWYDNEWGYSQRVVDLADICANQWK 403          
BLAST of CX287439 vs. ExPASy Swiss-Prot
Match: G3PB_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GAPB PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 6.476e-37
Identity = 84/136 (61.76%), Postives = 92/136 (67.65%), Query Frame = -3
Query:  189 AAALNIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTF-AEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW 593
            AAALNIVPTST                LNGIALRVPTPN         V+KK   AE+VNAAFR++AD  LKG+L+VCDEPLVSVDFRC             VMGDDMVKV+AWYDNEWGYSQRVVDLA +VANNW
Sbjct:  256 AAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRVPTPNVSVVDLVVNVAKKGITAEDVNAAFRKAADGPLKGVLAVCDEPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVANNW 391          
BLAST of CX287439 vs. ExPASy Swiss-Prot
Match: G3PB_PEA (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Pisum sativum GN=GAPB PE=2 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 6.062e-35
Identity = 82/136 (60.29%), Postives = 89/136 (65.44%), Query Frame = -3
Query:  189 AAALNIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTF-AEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW 593
            AAALNIVPTST                LNGIALRVPTPN         V+KK   AE+VNAAFR++A+  LKGIL VCD PLVSVDFRC             VMGDDMVKV+AWYDNEWGYSQRVVDLA +VAN W
Sbjct:  287 AAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRVPTPNVSVVDLVVNVAKKGISAEDVNAAFRKAAEGPLKGILDVCDVPLVSVDFRCSDVSTTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVANKW 422          
BLAST of CX287439 vs. ExPASy Swiss-Prot
Match: G3PA_CHLRE (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Chlamydomonas reinhardtii GN=GAPA PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.303e-34
Identity = 77/135 (57.04%), Postives = 87/135 (64.44%), Query Frame = -3
Query:  189 AAALNIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW 593
            AAALNIVPT+T                LNGIALRVPTP          V KKTFAEEVNAAFRE+A+  +KG+L V D PLVS+DF+C             VMGDDMVKV+AWYDNEWGYSQRVVDLA++ A  W
Sbjct:  238 AAALNIVPTTTGAAKAVSLVLPSLKGKLNGIALRVPTPTVSVVDLVVQVEKKTFAEEVNAAFREAANGPMKGVLHVEDAPLVSIDFKCTDQSTSIDASLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAEVTAKKW 372          
BLAST of CX287439 vs. ExPASy Swiss-Prot
Match: G3PB_ARATH (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Arabidopsis thaliana GN=GAPB PE=1 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 1.950e-33
Identity = 79/136 (58.09%), Postives = 87/136 (63.97%), Query Frame = -3
Query:  189 AAALNIVPTSTXXXXXXXXXXXXXXXXLNGIALRVPTPNXXXXXXXXXVSKKTF-AEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW 593
            AAALNIVPTST                LNGIALRVPTPN         V KK   AE+VN AFR++A+  +KGIL VCD PLVSVDFRC             VMGDDMVKV+AWYDNEWGYSQRVVDLA +VA+ W
Sbjct:  283 AAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRVPTPNVSVVDLVINVEKKGLTAEDVNEAFRKAANGPMKGILDVCDAPLVSVDFRCSDVSTTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVASKW 418          
The following BLAST results are available for this feature:
BLAST of CX287439 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 217
Match NameE-valueIdentityDescription
G3PA_SPIOL3.545e-4369.12Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_ARATH6.048e-4369.12Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_SINAL1.347e-4268.38Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_PEA1.141e-4168.38Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_TOBAC2.809e-4065.44Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_MAIZE2.013e-3863.97Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PB_TOBAC6.476e-3761.76Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PB_PEA6.062e-3560.29Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PA_CHLRE2.303e-3457.04Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PB_ARATH1.950e-3358.09Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]

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Properties
Property NameValue
Genbank descriptionC01009E11SK Veg1 Citrus clementina cDNA clone C01009E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287439 ID=CX287439; Name=CX287439; organism=Citrus clementina; type=EST; length=595bp
TTTAATGTAAGAATTTTATTGCATAATGATTAATGACAGGCAAAGGAAAA
AGGTTCCATAATAAGATAGTGTTATACATTCTACAAATTCTAAGACGCAG
AACAATAAATGGGGGAACCAAAAATGAAAAACAAGAACATCGTTGTGCCG
ATTACAGCCGAGTTCCGATTTTAGTATTTACTTCACTTCCAGTTGTTGGC
AACAATGTCGGCCAAATCCACAACCCTTTGAGAGTAACCCCATTCATTGT
CATACCATGCAATCACCTTAACCATGTCGTCTCCCATGACAAGTGTGAGA
GATGAATCAACGGTTGAGGATACATCAGAGCACCTGAAGTCGACCGAAAC
GAGGGGCTCGTCGCACACGGAGAGGATCCCTTTCAGTTCATTGTCAGCGC
TTTCTCTGAAAGCGGCGTTCACCTCTTCTGCGAAGGTTTTCTTCGACACC
TGAACGACAAGATCAACAACCGAGACGTTTGGTGTTGGCACACGAAGGGC
AATGCCGTTTAGTTTGCCTTTGAGTGCTGGGAGGACAAGGGCCACAGCTT
TTGCCGCACCAGTTGATGTTGGGACAATGTTGAGTGCAGCTGCTC
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