CX287490

Overview
NameCX287490
Unique NameCX287490
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length577
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig380 contig Ccv1_Contig380:505..1081. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287490 vs. ExPASy Swiss-Prot
Match: UCHL3_BOVIN (Ubiquitin carboxyl-terminal hydrolase isozyme L3 OS=Bos taurus GN=UCHL3 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.005e-39
Identity = 87/182 (47.80%), Postives = 121/182 (66.48%), Query Frame = 1
Query:   55 KRWLPLEANPDIMNQFLCGLGLPAEEAECYDVYGLDDELLAMVPQPVLAVLFLYPLTAQ-----SEEERRLQDNDKKEFSKNVYFMKQTVGNACGTIGLLHAVGNVTSEIKFQSDSFFDKFYKYTANLDPQERAAFLENDKEMEVAHSVAASAGDTEA---TDDVNDHFICFTCVDGELYEL 576
            +RWLPLEANP++ NQFL  LGL     +  DVYG+D ELL+MVP+PV AVL L+P+T +     +EEE +++   + + + +VYFMKQT+ NACGTIGL+HA+ N   ++ F+S S   KF + +A++ P+ERA +LEN   + V H  +A  G TEA    + V+ HFI    VDG LYEL
Sbjct:    4 QRWLPLEANPEVTNQFLKQLGLHPNW-QFVDVYGMDPELLSMVPRPVCAVLLLFPITEKYEVFRTEEEEKIKSQGQ-DVTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLKKFLEESASMSPEERARYLENYDAIRVTHETSAHEGQTEAPNIDEKVDLHFIALVHVDGHLYEL 183          
BLAST of CX287490 vs. ExPASy Swiss-Prot
Match: UCHL3_HUMAN (Ubiquitin carboxyl-terminal hydrolase isozyme L3 OS=Homo sapiens GN=UCHL3 PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 2.925e-39
Identity = 86/182 (47.25%), Postives = 120/182 (65.93%), Query Frame = 1
Query:   55 KRWLPLEANPDIMNQFLCGLGLPAEEAECYDVYGLDDELLAMVPQPVLAVLFLYPLTAQ-----SEEERRLQDNDKKEFSKNVYFMKQTVGNACGTIGLLHAVGNVTSEIKFQSDSFFDKFYKYTANLDPQERAAFLENDKEMEVAHSVAASAGDTEA---TDDVNDHFICFTCVDGELYEL 576
            +RWLPLEANP++ NQFL  LGL     +  DVYG+D ELL+MVP+PV AVL L+P+T +     +EEE +++   + + + +VYFMKQT+ NACGTIGL+HA+ N   ++ F+S S   KF + + ++ P+ERA +LEN   + V H  +A  G TEA    + V+ HFI    VDG LYEL
Sbjct:    4 QRWLPLEANPEVTNQFLKQLGLHPNW-QFVDVYGMDPELLSMVPRPVCAVLLLFPITEKYEVFRTEEEEKIKSQGQ-DVTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLKKFLEESVSMSPEERARYLENYDAIRVTHETSAHEGQTEAPSIDEKVDLHFIALVHVDGHLYEL 183          
BLAST of CX287490 vs. ExPASy Swiss-Prot
Match: UCHL3_MOUSE (Ubiquitin carboxyl-terminal hydrolase isozyme L3 OS=Mus musculus GN=Uchl3 PE=1 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 3.821e-39
Identity = 86/182 (47.25%), Postives = 120/182 (65.93%), Query Frame = 1
Query:   55 KRWLPLEANPDIMNQFLCGLGLPAEEAECYDVYGLDDELLAMVPQPVLAVLFLYPLTAQ-----SEEERRLQDNDKKEFSKNVYFMKQTVGNACGTIGLLHAVGNVTSEIKFQSDSFFDKFYKYTANLDPQERAAFLENDKEMEVAHSVAASAGDTEA---TDDVNDHFICFTCVDGELYEL 576
            +RWLPLEANP++ NQFL  LGL     +  DVYG++ ELL+MVP+PV AVL L+P+T +     +EEE +++   + + + +VYFMKQT+ NACGTIGL+HA+ N   ++ F+S S   KF + + ++ P+ERA FLEN   + V H  +A  G TEA    + V+ HFI    VDG LYEL
Sbjct:    4 QRWLPLEANPEVTNQFLKQLGLHPNW-QFVDVYGMEPELLSMVPRPVCAVLLLFPITEKYEVFRTEEEEKIKSQGQ-DVTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLKKFLEESVSMSPEERAKFLENYDAIRVTHETSAHEGQTEAPSIDEKVDLHFIALVHVDGHLYEL 183          
BLAST of CX287490 vs. ExPASy Swiss-Prot
Match: UCHL3_PIG (Ubiquitin carboxyl-terminal hydrolase isozyme L3 OS=Sus scrofa GN=UCHL3 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 8.511e-39
Identity = 86/182 (47.25%), Postives = 121/182 (66.48%), Query Frame = 1
Query:   55 KRWLPLEANPDIMNQFLCGLGLPAEEAECYDVYGLDDELLAMVPQPVLAVLFLYPLTAQ-----SEEERRLQDNDKKEFSKNVYFMKQTVGNACGTIGLLHAVGNVTSEIKFQSDSFFDKFYKYTANLDPQERAAFLENDKEMEVAHSVAASAGDTEA---TDDVNDHFICFTCVDGELYEL 576
            +RWLPLEANP++ NQFL  LGL     +  DVYG+D ELL+MVP+PV AVL L+P+T +     +EEE +++   + + + +VYFMKQT+ NACGTIGL+HA+ N  +++ F+S S   KF + +A++ P ERA +LE+   + V H  +A  G TEA    + V+ HFI    VDG LYEL
Sbjct:    4 QRWLPLEANPEVTNQFLKQLGLHPNW-QFVDVYGMDPELLSMVPRPVCAVLLLFPITEKYEVFRTEEEEKIKSQGQ-DVTPSVYFMKQTISNACGTIGLIHAIANNKNKMHFESGSTLKKFLEESASMSPDERARYLESYDAIPVTHETSAHEGQTEAPNIDEKVDLHFIALVHVDGHLYEL 183          
BLAST of CX287490 vs. ExPASy Swiss-Prot
Match: UCHL3_RAT (Ubiquitin carboxyl-terminal hydrolase isozyme L3 OS=Rattus norvegicus GN=Uchl3 PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 5.517e-38
Identity = 85/182 (46.70%), Postives = 118/182 (64.84%), Query Frame = 1
Query:   55 KRWLPLEANPDIMNQFLCGLGLPAEEAECYDVYGLDDELLAMVPQPVLAVLFLYPLTAQ-----SEEERRLQDNDKKEFSKNVYFMKQTVGNACGTIGLLHAVGNVTSEIKFQSDSFFDKFYKYTANLDPQERAAFLENDKEMEVAHSVAASAGDTEA---TDDVNDHFICFTCVDGELYEL 576
            +RWLPLEANP++ NQFL  LGL     +  DVYG++ ELL+MVP+PV AVL L+P+T +     +EEE +++   + + + +VYFMKQT+ NACGTIGL+HA+ N   ++ F+S S   KF + +  + P+ERA  LEN   + V H  +A  G TEA    + V+ HFI    VDG LYEL
Sbjct:    4 QRWLPLEANPEVTNQFLKQLGLHPNW-QFVDVYGMEPELLSMVPRPVCAVLLLFPITEKYEVFRTEEEEKIKSQGQ-DVTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSALKKFLEESVAMSPEERARHLENYDAIRVTHETSAHEGQTEAPSIDEKVDLHFIALVHVDGHLYEL 183          
BLAST of CX287490 vs. ExPASy Swiss-Prot
Match: UCHL4_MOUSE (Ubiquitin carboxyl-terminal hydrolase isozyme L4 OS=Mus musculus GN=Uchl4 PE=1 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 6.100e-37
Identity = 83/185 (44.86%), Postives = 120/185 (64.86%), Query Frame = 1
Query:   55 KRWLPLEANPDIMNQFLCGLGLPAEEAECYDVYGLDDELLAMVPQPVLAVLFLYPLTAQ-----SEEERRLQDNDKKEFSKNVYFMKQTVGNACGTIG---LLHAVGNVTSEIKFQSDSFFDKFYKYTANLDPQERAAFLENDKEMEVAHSVAASAGDTEA---TDDVNDHFICFTCVDGELYEL 576
            +RWLPLEANP++ NQFL  LGL     +  DVYG++ ELL+++P+PV AVL L+P+T +     +EEE +++   + + + +VYFMKQT+ NACGTIG   L+HA+ N   ++ F+S S   KF + + ++ P+ERA +LEN   + V H  +A  G TEA    + V+ HFI    VDG LYEL
Sbjct:    4 QRWLPLEANPEVTNQFLKQLGLHPNW-QFVDVYGMESELLSIIPRPVCAVLLLFPITEKYEVFRTEEEEKIKSQGQ-DVTSSVYFMKQTISNACGTIGTIGLIHAIANNKDKVHFESGSTLKKFLEESVSMSPEERAKYLENYDAIRVTHETSAHEGQTEAPSIDEKVDLHFIALVHVDGHLYEL 186          
BLAST of CX287490 vs. ExPASy Swiss-Prot
Match: UCHL1_HORSE (Ubiquitin carboxyl-terminal hydrolase isozyme L1 OS=Equus caballus GN=UCHL1 PE=2 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 1.502e-35
Identity = 78/172 (45.35%), Postives = 105/172 (61.05%), Query Frame = 1
Query:   67 PLEANPDIMNQFLCGLGLPAEEAECYDVYGLDDELLAMVPQPVLAVLFLYPLTAQSEEERRLQDNDKK--EFSKNVYFMKQTVGNACGTIGLLHAVGNVTSEIKFQSDSFFDKFYKYTANLDPQERAAFLENDKEMEVAHSVAASAGDTEATDDVNDHFICFTCVDGELYEL 576
            P+E NP+++N+ L  LG+ A +    DV GL++E L  VP P  A+L L+PLTAQ E  R+ Q  + K  E S  VYFMKQT+GN+CGTIGL+HAV N   +++F+  S   +F   T  L P++RA   E ++ ++ AH   A  G     D VN HFI F  VDG LYEL
Sbjct:    5 PMEINPEMLNKVLARLGV-AGQWRFVDVLGLEEETLGSVPAPACALLLLFPLTAQHENFRKKQIEELKGQEVSPKVYFMKQTIGNSCGTIGLIHAVANNQDKLEFEDGSVLKQFLSETEKLSPEDRAKCFEKNEAIQAAHDAVAQEGQCRVDDKVNFHFILFNNVDGHLYEL 175          
BLAST of CX287490 vs. ExPASy Swiss-Prot
Match: UCHL1_RAT (Ubiquitin carboxyl-terminal hydrolase isozyme L1 OS=Rattus norvegicus GN=Uchl1 PE=1 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 2.563e-35
Identity = 78/172 (45.35%), Postives = 105/172 (61.05%), Query Frame = 1
Query:   67 PLEANPDIMNQFLCGLGLPAEEAECYDVYGLDDELLAMVPQPVLAVLFLYPLTAQSEEERRLQDNDKK--EFSKNVYFMKQTVGNACGTIGLLHAVGNVTSEIKFQSDSFFDKFYKYTANLDPQERAAFLENDKEMEVAHSVAASAGDTEATDDVNDHFICFTCVDGELYEL 576
            P+E NP+++N+ L  LG+ A +    DV GL++E L  VP P  A+L L+PLTAQ E  R+ Q  + K  E S  VYFMKQT+GN+CGTIGL+HAV N   +++F+  S   +F   T  L P++RA   E ++ ++ AH   A  G     D VN HFI F  VDG LYEL
Sbjct:    5 PMEINPEMLNKVLAKLGV-AGQWRFADVLGLEEETLGSVPSPACALLLLFPLTAQHENFRKKQIEELKGQEVSPKVYFMKQTIGNSCGTIGLIHAVANNQDKLEFEDGSVLKQFLSETEKLSPEDRAKCFEKNEAIQAAHDSVAQEGQCRVDDKVNFHFILFNNVDGHLYEL 175          
BLAST of CX287490 vs. ExPASy Swiss-Prot
Match: UCHL1_MOUSE (Ubiquitin carboxyl-terminal hydrolase isozyme L1 OS=Mus musculus GN=Uchl1 PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.563e-35
Identity = 78/172 (45.35%), Postives = 105/172 (61.05%), Query Frame = 1
Query:   67 PLEANPDIMNQFLCGLGLPAEEAECYDVYGLDDELLAMVPQPVLAVLFLYPLTAQSEEERRLQDNDKK--EFSKNVYFMKQTVGNACGTIGLLHAVGNVTSEIKFQSDSFFDKFYKYTANLDPQERAAFLENDKEMEVAHSVAASAGDTEATDDVNDHFICFTCVDGELYEL 576
            P+E NP+++N+ L  LG+ A +    DV GL++E L  VP P  A+L L+PLTAQ E  R+ Q  + K  E S  VYFMKQT+GN+CGTIGL+HAV N   +++F+  S   +F   T  L P++RA   E ++ ++ AH   A  G     D VN HFI F  VDG LYEL
Sbjct:    5 PMEINPEMLNKVLAKLGV-AGQWRFADVLGLEEETLGSVPSPACALLLLFPLTAQHENFRKKQIEELKGQEVSPKVYFMKQTIGNSCGTIGLIHAVANNQDKLEFEDGSVLKQFLSETEKLSPEDRAKCFEKNEAIQAAHDSVAQEGQCRVDDKVNFHFILFNNVDGHLYEL 175          
BLAST of CX287490 vs. ExPASy Swiss-Prot
Match: UCHL1_PIG (Ubiquitin carboxyl-terminal hydrolase isozyme L1 OS=Sus scrofa GN=UCHL1 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 5.709e-35
Identity = 78/172 (45.35%), Postives = 104/172 (60.47%), Query Frame = 1
Query:   67 PLEANPDIMNQFLCGLGLPAEEAECYDVYGLDDELLAMVPQPVLAVLFLYPLTAQSEEERRLQDNDKK--EFSKNVYFMKQTVGNACGTIGLLHAVGNVTSEIKFQSDSFFDKFYKYTANLDPQERAAFLENDKEMEVAHSVAASAGDTEATDDVNDHFICFTCVDGELYEL 576
            P+E NP+++N+ L  LG+ A      DV GL++E L  VP P  A+L L+PLTAQ E  R+ Q  + K  E S  VYFMKQT+GN+CGTIGL+HAV N   +++F+  S   +F   T  L P++RA   E ++ ++ AH   A  G     D VN HFI F  VDG LYEL
Sbjct:    5 PMEINPEMLNKVLTRLGV-AGHWRFADVLGLEEESLGSVPAPACALLLLFPLTAQHENFRKKQIEELKGQEVSPKVYFMKQTIGNSCGTIGLIHAVANNQDKLEFEDGSVLKQFLSETEKLSPEDRAKCFEKNEAIQAAHDAVAQEGQCRVDDKVNFHFILFNNVDGHLYEL 175          
The following BLAST results are available for this feature:
BLAST of CX287490 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
UCHL3_BOVIN1.005e-3947.80Ubiquitin carboxyl-terminal hydrolase isozyme L3 O... [more]
UCHL3_HUMAN2.925e-3947.25Ubiquitin carboxyl-terminal hydrolase isozyme L3 O... [more]
UCHL3_MOUSE3.821e-3947.25Ubiquitin carboxyl-terminal hydrolase isozyme L3 O... [more]
UCHL3_PIG8.511e-3947.25Ubiquitin carboxyl-terminal hydrolase isozyme L3 O... [more]
UCHL3_RAT5.517e-3846.70Ubiquitin carboxyl-terminal hydrolase isozyme L3 O... [more]
UCHL4_MOUSE6.100e-3744.86Ubiquitin carboxyl-terminal hydrolase isozyme L4 O... [more]
UCHL1_HORSE1.502e-3545.35Ubiquitin carboxyl-terminal hydrolase isozyme L1 O... [more]
UCHL1_RAT2.563e-3545.35Ubiquitin carboxyl-terminal hydrolase isozyme L1 O... [more]
UCHL1_MOUSE2.563e-3545.35Ubiquitin carboxyl-terminal hydrolase isozyme L1 O... [more]
UCHL1_PIG5.709e-3545.35Ubiquitin carboxyl-terminal hydrolase isozyme L1 O... [more]

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Properties
Property NameValue
Genbank descriptionC01010B04SK Veg1 Citrus clementina cDNA clone C01010B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287490 ID=CX287490; Name=CX287490; organism=Citrus clementina; type=EST; length=577bp
AATTCGGCACGAGGAGAAAGCACAATGGCAGCAGTAGACGAGCGTCCTTC
AGCTAAGAGGTGGCTTCCTCTTGAAGCTAATCCCGATATCATGAACCAGT
TCCTTTGTGGCCTTGGTCTTCCAGCTGAGGAGGCAGAGTGCTATGATGTG
TATGGCTTGGATGATGAGCTCTTGGCAATGGTTCCGCAACCTGTTCTTGC
TGTGCTGTTTCTTTATCCCTTAACTGCACAGAGTGAAGAAGAAAGAAGGT
TGCAGGACAATGACAAAAAGGAATTTAGCAAGAATGTTTATTTCATGAAG
CAAACTGTTGGAAATGCTTGTGGAACAATTGGACTTCTTCATGCTGTTGG
GAACGTCACTTCGGAAATCAAGTTTCAATCTGATTCATTCTTCGATAAAT
TTTACAAGTACACAGCGAACTTGGATCCACAAGAGCGTGCAGCATTTCTT
GAGAATGATAAGGAAATGGAAGTTGCTCATTCGGTAGCAGCTTCAGCTGG
TGACACAGAGGCTACCGATGACGTGAATGATCATTTTATCTGCTTCACCT
GTGTGGATGGGGAACTTTATGAACTTG
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