CX287502

Overview
NameCX287502
Unique NameCX287502
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length596
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX287502 vs. ExPASy Swiss-Prot
Match: RPAP3_XENTR (RNA polymerase II-associated protein 3 OS=Xenopus tropicalis GN=rpap3 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.175e-11
Identity = 45/146 (30.82%), Postives = 72/146 (49.32%), Query Frame = 3 
Query:    9 LHHKSAGNEAVKSRRYTEAVEHYTVALSTNIKSRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAEKAKQSRSPGRTISSRDLRQACRHLSSMEEDAKKGEPLD 446
            L  K  GN   KS +Y EA+E YT  +  +    P+ A+   NRA+A   L + A A +DC+LA+AL+ NY KA +RR A    ++D   A  D ++++ +  N    K              +LR+  + L S   D ++ E ++
Sbjct:  133 LLEKEKGNNYFKSGQYDEAIECYTRGMDAD----PYNAVLPTNRASAFFRLKKYAVAESDCNLAIALNHNYAKAYARRGAARLALKDLQGAKEDYEKVLELDVNNFEAK-------------NELRKINKELQSSTSDVQEKEAIE 261
The following BLAST results are available for this feature:
BLAST of CX287502 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RPAP3_XENTR6.175e-1130.82RNA polymerase II-associated protein 3 OS=Xenopus ... [more]
back to top
Properties
Property NameValue
Genbank descriptionC01010C05SK Veg1 Citrus clementina cDNA clone C01010C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287502 ID=CX287502; Name=CX287502; organism=Citrus clementina; type=EST; length=596bp
GTGCACTTCTACATCACAAGAGTGCTGGGAATGAAGCAGTTAAATCAAGA
AGGTATACAGAAGCAGTGGAGCATTACACTGTTGCTTTATCAACCAATAT
CAAATCTCGCCCTTTTGCAGCTATCTGTTTCTGCAATCGTGCTGCTGCAC
TTCAAGCTTTGGGCCAAATAGCTGATGCTATCGCAGATTGTAGTCTAGCA
ATGGCCCTCGATGAAAATTACACTAAGGCTGTTTCTAGAAGAGCTGCCTT
ACATGAGATGATCAGAGACTACACACAAGCAGCTAGTGACCTTCAGAGGC
TTGTATCAATTCTTGAAAATCAATCTGCTGAAAAGGCGAAACAGTCAAGA
TCACCAGGTAGGACCATTAGCAGCAGAGACTTAAGGCAAGCTTGTCGGCA
TTTGTCTTCAATGGAAGAAGATGCGAAGAAGGGAGAGCCGCTGGATTTCT
ACCTAATCTTGTAAGTCTATTCCGTTGGAGTTTTTTGAACTTATATTTTC
TGGATAACCTTTATCAAACATGTTCTATCAGAATTACTGACTCAAAGTGG
ATTGGCAATGTCCTGTGAATAAAAGACATAATACTTATGTTATTAA
back to top