CX287506

Overview
NameCX287506
Unique NameCX287506
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length555
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11964 contig Ccv1_Contig11964:239..793. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287506 vs. ExPASy Swiss-Prot
Match: PSAG_ARATH (Photosystem I reaction center subunit V, chloroplastic OS=Arabidopsis thaliana GN=PSAG PE=1 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 1.486e-53
Identity = 104/131 (79.39%), Postives = 116/131 (88.55%), Query Frame = 1
Query:    4 GLRPLNTR-AKTPLPKLATSAKRNSFGGIKAELNTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKFFG 393
            GLRPL    + + LPKL+T+ +++S   ++AEL+  +VISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNG THFEAGD RAKEYVSLLKSNDP+GFNIVDVLAWGSIGHIVAYYILATSSNGYDP FFG
Sbjct:   30 GLRPLRLGGSSSALPKLSTTGRKSSSAVVRAELSPSIVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGKTHFEAGDDRAKEYVSLLKSNDPIGFNIVDVLAWGSIGHIVAYYILATSSNGYDPSFFG 160          
BLAST of CX287506 vs. ExPASy Swiss-Prot
Match: PSAG_SPIOL (Photosystem I reaction center subunit V, chloroplastic OS=Spinacia oleracea GN=PSAG PE=1 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 7.895e-47
Identity = 99/131 (75.57%), Postives = 109/131 (83.21%), Query Frame = 1
Query:    4 GLRPL--NTRAKTPLPKLATSAKRNSFGGIKAELNTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKFF 390
            GLRPL  N  +      L+ S+ R S    +AEL+  LVISLSTGLSLFLGRFVFFNFQREN+AKQ +PEQNG++HFEAGD RAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILAT+SNGYDP FF
Sbjct:   39 GLRPLKLNISSNNSSSSLSMSSARRSMT-CRAELSPSLVISLSTGLSLFLGRFVFFNFQRENMAKQ-VPEQNGMSHFEAGDTRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATASNGYDPSFF 167          
BLAST of CX287506 vs. ExPASy Swiss-Prot
Match: PSAG_HORVU (Photosystem I reaction center subunit V, chloroplastic OS=Hordeum vulgare GN=PSAG PE=1 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 9.988e-42
Identity = 83/102 (81.37%), Postives = 91/102 (89.22%), Query Frame = 1
Query:   88 KAELNTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKFFG 393
            +A L   +VISLSTGLSL +GRFVFFNFQRENVAKQ +PEQNG THFEAGD RAKE+  +LKSNDPVGFN+VDVLAWGSIGHIVAYYILAT+SNGYDP FFG
Sbjct:   43 RAALEPSVVISLSTGLSLVMGRFVFFNFQRENVAKQ-VPEQNGKTHFEAGDERAKEFAGILKSNDPVGFNLVDVLAWGSIGHIVAYYILATTSNGYDPPFFG 143          
BLAST of CX287506 vs. ExPASy Swiss-Prot
Match: PSAG_TORRU (Photosystem I reaction center subunit V, chloroplastic OS=Tortula ruralis GN=PSAG PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.313e-22
Identity = 50/93 (53.76%), Postives = 65/93 (69.89%), Query Frame = 1
Query:  100 NTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYD 378
            NT  +IS ST   L LGRFVF  FQR  V++ GLPEQNGV          + + S+LK+NDP GF +VDVLAWG++GH V ++ILAT++NGY+
Sbjct:   17 NTSFIISASTAALLALGRFVFLPFQRSMVSRHGLPEQNGVPTTRRVTAVRRRWWSMLKTNDPAGFTLVDVLAWGALGHAVGFFILATATNGYN 109          
BLAST of CX287506 vs. ExPASy Swiss-Prot
Match: PSAG_PEA (Photosystem I reaction center subunit V (Fragment) OS=Pisum sativum GN=PSAG PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.373e-13
Identity = 37/39 (94.87%), Postives = 37/39 (94.87%), Query Frame = 1
Query:   94 ELNTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQ 210
            ELN  LVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQ
Sbjct:    1 ELNPSLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQ 39          
BLAST of CX287506 vs. ExPASy Swiss-Prot
Match: PSAG_CHLRE (Photosystem I reaction center subunit V, chloroplastic OS=Chlamydomonas reinhardtii GN=PSAG PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.314e-12
Identity = 39/95 (41.05%), Postives = 57/95 (60.00%), Query Frame = 1
Query:   88 KAELNTPLVISLSTGLSLFLGRFVFFNFQRE--NVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSS 366
            KA L+  +VIS ST   L +GRFVF  +QR   N      P+  G T+F+  D++     ++  +NDP GFNI+DV  WG++GH V + +LA +S
Sbjct:   29 KAALDPQIVISGSTAAFLAIGRFVFLGYQRREANFDSTVGPKTTGATYFD--DLQKNS--TIFATNDPAGFNIIDVAGWGALGHAVGFAVLAINS 119          
The following BLAST results are available for this feature:
BLAST of CX287506 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PSAG_ARATH1.486e-5379.39Photosystem I reaction center subunit V, chloropla... [more]
PSAG_SPIOL7.895e-4775.57Photosystem I reaction center subunit V, chloropla... [more]
PSAG_HORVU9.988e-4281.37Photosystem I reaction center subunit V, chloropla... [more]
PSAG_TORRU2.313e-2253.76Photosystem I reaction center subunit V, chloropla... [more]
PSAG_PEA4.373e-1394.87Photosystem I reaction center subunit V (Fragment)... [more]
PSAG_CHLRE6.314e-1241.05Photosystem I reaction center subunit V, chloropla... [more]
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Properties
Property NameValue
Genbank descriptionC01010C09SK Veg1 Citrus clementina cDNA clone C01010C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287506 ID=CX287506; Name=CX287506; organism=Citrus clementina; type=EST; length=555bp
CAAGGCCTAAGACCCCTCAACACCAGGGCCAAAACCCCCCTCCCCAAGCT
CGCCACCTCCGCCAAAAGAAACAGCTTCGGCGGCATTAAAGCTGAGCTGA
ACACACCACTTGTCATCAGCCTCAGCACTGGCCTCTCCTTGTTCTTGGGC
AGGTTCGTCTTCTTCAACTTCCAAAGAGAGAACGTGGCCAAACAAGGCTT
GCCCGAGCAGAATGGAGTCACCCACTTTGAAGCCGGTGATGTTCGTGCCA
AGGAATATGTTAGCCTCCTCAAATCCAACGACCCAGTTGGCTTTAACATT
GTTGATGTTCTCGCTTGGGGTTCCATTGGCCATATTGTCGCTTACTACAT
CTTGGCCACCTCCAGCAACGGCTATGATCCCAAGTTCTTTGGTTGATTTT
GTTATTTGTACTGTCTCTCTTTTGTCTCTTTTAGTTTCTTAATTTCTCAA
GTGTTGCGCTTTGTATAGTTAATAAATTTCCTAGCATTTAATGGATGAGA
CCGATGATGTAATCTATGCATTTTTCACATTTTTAACGTGCATGTTTTTT
TCTCT
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