CX287559

Overview
NameCX287559
Unique NameCX287559
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length400
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287559 vs. ExPASy Swiss-Prot
Match: IDND_VITVI (L-idonate 5-dehydrogenase OS=Vitis vinifera GN=GSVIVT00012394001 PE=1 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 1.057e-33
Identity = 66/79 (83.54%), Postives = 72/79 (91.14%), Query Frame = -1
Query:   98 IRHEEMTVPLTPAAVREVDVVGVFRYKNTWPLCLELLRSGKIDVKPLVTHRFGFSQKEVEEAFETSARGGTAIKVMFNL 334
            +   EMTVPLTPAA REVD+VG+FRY+NTWPLCLE LRSGKIDVKPL+THRF FSQK+VEEAFETSARGG AIKVMFNL
Sbjct:  288 LAQSEMTVPLTPAAAREVDIVGIFRYRNTWPLCLEFLRSGKIDVKPLITHRFTFSQKDVEEAFETSARGGNAIKVMFNL 366          
BLAST of CX287559 vs. ExPASy Swiss-Prot
Match: DHSO_SHEEP (Sorbitol dehydrogenase OS=Ovis aries GN=SORD PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.123e-14
Identity = 42/73 (57.53%), Postives = 52/73 (71.23%), Query Frame = -1
Query:  107 EMT-VPLTPAAVREVDVVGVFRYKNTWPLCLELLRSGKIDVKPLVTHRFGFSQKEVEEAFETSARGGTAIKVM 322
            EMT VPL  AA REVD+ GVFRY NTWP+ + +L S  ++VKPLVTHRF    ++  EAFETS + G  +KVM
Sbjct:  275 EMTSVPLVHAATREVDIKGVFRYCNTWPMAISMLASKSVNVKPLVTHRFPL--EKALEAFETSKK-GLGLKVM 344          
BLAST of CX287559 vs. ExPASy Swiss-Prot
Match: DHSO_MOUSE (Sorbitol dehydrogenase OS=Mus musculus GN=Sord PE=1 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 7.123e-14
Identity = 39/73 (53.42%), Postives = 52/73 (71.23%), Query Frame = -1
Query:  107 EEMTVPLTPAAVREVDVVGVFRYKNTWPLCLELLRSGKIDVKPLVTHRFGFSQKEVEEAFETSARGGTAIKVM 325
            E + +PL  AA+REVD+ GVFRY NTWP+ + +L S  ++VKPLVTHRF    ++  EAFET A+ G  +KVM
Sbjct:  278 EMVNLPLVHAAIREVDIKGVFRYCNTWPMAISMLASKTLNVKPLVTHRFPL--EKAVEAFET-AKKGVGLKVM 347          
BLAST of CX287559 vs. ExPASy Swiss-Prot
Match: DHSO_BOVIN (Sorbitol dehydrogenase OS=Bos taurus GN=SORD PE=2 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 7.123e-14
Identity = 42/73 (57.53%), Postives = 52/73 (71.23%), Query Frame = -1
Query:  107 EMT-VPLTPAAVREVDVVGVFRYKNTWPLCLELLRSGKIDVKPLVTHRFGFSQKEVEEAFETSARGGTAIKVM 322
            EMT VPL  AA REVD+ GVFRY NTWP+ + +L S  ++VKPLVTHRF    ++  EAFETS + G  +KVM
Sbjct:  277 EMTSVPLVHAATREVDIKGVFRYCNTWPMAISMLASKSVNVKPLVTHRFPL--EKALEAFETSKK-GLGLKVM 346          
BLAST of CX287559 vs. ExPASy Swiss-Prot
Match: DHSO_RAT (Sorbitol dehydrogenase OS=Rattus norvegicus GN=Sord PE=1 SV=4)

HSP 1 Score: 75.485 bits (184), Expect = 9.303e-14
Identity = 40/73 (54.79%), Postives = 52/73 (71.23%), Query Frame = -1
Query:  107 EEMTVPLTPAAVREVDVVGVFRYKNTWPLCLELLRSGKIDVKPLVTHRFGFSQKEVEEAFETSARGGTAIKVM 325
            E + +PL  AAVREVD+ GVFRY NTWP+ + +L S  ++VKPLVTHRF    ++  EAFET A+ G  +KVM
Sbjct:  278 EMINLPLVHAAVREVDIKGVFRYCNTWPMAVSMLASKTLNVKPLVTHRFPL--EKAVEAFET-AKKGLGLKVM 347          
BLAST of CX287559 vs. ExPASy Swiss-Prot
Match: DHSO_HUMAN (Sorbitol dehydrogenase OS=Homo sapiens GN=SORD PE=1 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 1.215e-13
Identity = 39/73 (53.42%), Postives = 51/73 (69.86%), Query Frame = -1
Query:  107 EEMTVPLTPAAVREVDVVGVFRYKNTWPLCLELLRSGKIDVKPLVTHRFGFSQKEVEEAFETSARGGTAIKVM 325
            E  TVPL  AA+REVD+ GVFRY NTWP+ + +L S  ++VKPLVTHRF    ++  EAFET  + G  +K+M
Sbjct:  278 EMTTVPLLHAAIREVDIKGVFRYCNTWPVAISMLASKSVNVKPLVTHRFPL--EKALEAFETFKK-GLGLKIM 347          
BLAST of CX287559 vs. ExPASy Swiss-Prot
Match: DHSO_MACFA (Sorbitol dehydrogenase OS=Macaca fascicularis GN=SORD PE=2 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 1.587e-13
Identity = 38/73 (52.05%), Postives = 51/73 (69.86%), Query Frame = -1
Query:  107 EEMTVPLTPAAVREVDVVGVFRYKNTWPLCLELLRSGKIDVKPLVTHRFGFSQKEVEEAFETSARGGTAIKVM 325
            E  T+PL  AAVREVD+ GVFRY NTWP+ + +L S  +++KPLVTHRF    ++  EAFET  + G  +K+M
Sbjct:  278 EMTTIPLLHAAVREVDIKGVFRYCNTWPVAISMLASKSVNIKPLVTHRFPL--EKALEAFETFKK-GLGLKIM 347          
BLAST of CX287559 vs. ExPASy Swiss-Prot
Match: DHSO_PONAB (Sorbitol dehydrogenase OS=Pongo abelii GN=SORD PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.072e-13
Identity = 37/73 (50.68%), Postives = 51/73 (69.86%), Query Frame = -1
Query:  107 EEMTVPLTPAAVREVDVVGVFRYKNTWPLCLELLRSGKIDVKPLVTHRFGFSQKEVEEAFETSARGGTAIKVM 325
            E  T+PL  AA+REVD+ GVFRY NTWP+ + +L S  ++VKPL+THRF    ++  EAFET  + G  +K+M
Sbjct:  278 EMTTIPLLHAAIREVDIKGVFRYCNTWPVAISMLASKSVNVKPLITHRFPL--EKALEAFETFKK-GLGLKIM 347          
The following BLAST results are available for this feature:
BLAST of CX287559 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
IDND_VITVI1.057e-3383.54L-idonate 5-dehydrogenase OS=Vitis vinifera GN=GSV... [more]
DHSO_SHEEP7.123e-1457.53Sorbitol dehydrogenase OS=Ovis aries GN=SORD PE=1 ... [more]
DHSO_MOUSE7.123e-1453.42Sorbitol dehydrogenase OS=Mus musculus GN=Sord PE=... [more]
DHSO_BOVIN7.123e-1457.53Sorbitol dehydrogenase OS=Bos taurus GN=SORD PE=2 ... [more]
DHSO_RAT9.303e-1454.79Sorbitol dehydrogenase OS=Rattus norvegicus GN=Sor... [more]
DHSO_HUMAN1.215e-1353.42Sorbitol dehydrogenase OS=Homo sapiens GN=SORD PE=... [more]
DHSO_MACFA1.587e-1352.05Sorbitol dehydrogenase OS=Macaca fascicularis GN=S... [more]
DHSO_PONAB2.072e-1350.68Sorbitol dehydrogenase OS=Pongo abelii GN=SORD PE=... [more]
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Properties
Property NameValue
Genbank descriptionC01010H05SK Veg1 Citrus clementina cDNA clone C01010H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287559 ID=CX287559; Name=CX287559; organism=Citrus clementina; type=EST; length=400bp
GACAATTCCATTTTATTTAATCGTTTGCCCAAACGTTTACATGGCCGTTG
TATTGTACAGATTAAACATGACCTTGATTGCAGTACATTGTATCTTACAG
ATTAAACATGACCTTGATTGCAGTACCACCACGAGCACTTGTTTCAAAGG
CCTCTTCCACTTCTTTCTGGGAGAAACCAAACCTGTGCGTGACAAGGGGC
TTTACATCAATCTTTCCGCTTCTAAGCAACTCCAGACACAGTGGCCAGGT
GTTCTTGTAGCGAAACACCCCCACCACATCCACTTCCCTTACAGCAGCTG
GAGTGAGTGGGACAGTCATTTCCTCGTGCCGAATTCGGCACGAGGCTAGT
CTCGAGTTTTTTTTTTTTTTTTTTTAGATCAAATTGAAGCATTTTATAAA
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