CX287669 | Citrus Genome Database

Overview


Name	CX287669
Unique Name	CX287669
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	381

Libraries


Library Name	Type
Veg1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Ccv1_Contig10362	contig	Ccv1_Contig10362:1020..1400.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CX287669 vs. ExPASy Swiss-Prot
Match: YCF72_ORYSJ (Uncharacterized protein ycf72 OS=Oryza sativa subsp. japonica GN=ycf72-1 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.086e-50
Identity = 86/98 (87.76%), Postives = 88/98 (89.80%), Query Frame = -1

Query:   88 TTPLTTGRFPSQHLDPALPKLFWFAPTFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFATAPAALANCPPFPSVISMLCMAVPKGISVEVDSSF 381
            TTPLTTGR PSQHLDPALPKLFWF PT PTCPTVA+QF D KRTSP+GN  VAD PSFAISFATAPAALANCPP P VISMLCMAVPKGISVEVDSSF
Sbjct:   18 TTPLTTGRLPSQHLDPALPKLFWFTPTLPTCPTVAKQFWDTKRTSPDGNLKVADLPSFAISFATAPAALANCPPLPRVISMLCMAVPKGISVEVDSSF 115

HSP 2 Score: 38.1206 bits (87), Expect = 1.086e-50
Identity = 16/21 (76.19%), Postives = 19/21 (90.48%), Query Frame = -3

Query:   23 INQNPFPNRTSFFQSIRLSGC 85
            +++NPFPN TSFFQSIRLS C
Sbjct:  116 LSKNPFPNCTSFFQSIRLSRC 136

[Close]

BLAST of CX287669 vs. ExPASy Swiss-Prot
Match: YCF72_ORYSI (Uncharacterized protein ycf72 OS=Oryza sativa subsp. indica GN=ycf72-1 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.086e-50
Identity = 86/98 (87.76%), Postives = 88/98 (89.80%), Query Frame = -1

Query:   88 TTPLTTGRFPSQHLDPALPKLFWFAPTFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFATAPAALANCPPFPSVISMLCMAVPKGISVEVDSSF 381
            TTPLTTGR PSQHLDPALPKLFWF PT PTCPTVA+QF D KRTSP+GN  VAD PSFAISFATAPAALANCPP P VISMLCMAVPKGISVEVDSSF
Sbjct:   18 TTPLTTGRLPSQHLDPALPKLFWFTPTLPTCPTVAKQFWDTKRTSPDGNLKVADLPSFAISFATAPAALANCPPLPRVISMLCMAVPKGISVEVDSSF 115

HSP 2 Score: 38.1206 bits (87), Expect = 1.086e-50
Identity = 16/21 (76.19%), Postives = 19/21 (90.48%), Query Frame = -3

Query:   23 INQNPFPNRTSFFQSIRLSGC 85
            +++NPFPN TSFFQSIRLS C
Sbjct:  116 LSKNPFPNCTSFFQSIRLSRC 136

[Close]

BLAST of CX287669 vs. ExPASy Swiss-Prot
Match: YCF72_ORYSA (Uncharacterized protein ycf72 OS=Oryza sativa GN=ycf72-1 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.086e-50
Identity = 86/98 (87.76%), Postives = 88/98 (89.80%), Query Frame = -1

Query:   88 TTPLTTGRFPSQHLDPALPKLFWFAPTFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFATAPAALANCPPFPSVISMLCMAVPKGISVEVDSSF 381
            TTPLTTGR PSQHLDPALPKLFWF PT PTCPTVA+QF D KRTSP+GN  VAD PSFAISFATAPAALANCPP P VISMLCMAVPKGISVEVDSSF
Sbjct:   18 TTPLTTGRLPSQHLDPALPKLFWFTPTLPTCPTVAKQFWDTKRTSPDGNLKVADLPSFAISFATAPAALANCPPLPRVISMLCMAVPKGISVEVDSSF 115

HSP 2 Score: 38.1206 bits (87), Expect = 1.086e-50
Identity = 16/21 (76.19%), Postives = 19/21 (90.48%), Query Frame = -3

Query:   23 INQNPFPNRTSFFQSIRLSGC 85
            +++NPFPN TSFFQSIRLS C
Sbjct:  116 LSKNPFPNCTSFFQSIRLSRC 136

[Close]

BLAST of CX287669 vs. ExPASy Swiss-Prot
Match: YCF72_ORYNI (Uncharacterized protein ycf72 OS=Oryza nivara GN=ycf72-1 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.086e-50
Identity = 86/98 (87.76%), Postives = 88/98 (89.80%), Query Frame = -1

Query:   88 TTPLTTGRFPSQHLDPALPKLFWFAPTFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFATAPAALANCPPFPSVISMLCMAVPKGISVEVDSSF 381
            TTPLTTGR PSQHLDPALPKLFWF PT PTCPTVA+QF D KRTSP+GN  VAD PSFAISFATAPAALANCPP P VISMLCMAVPKGISVEVDSSF
Sbjct:   18 TTPLTTGRLPSQHLDPALPKLFWFTPTLPTCPTVAKQFWDTKRTSPDGNLKVADLPSFAISFATAPAALANCPPLPRVISMLCMAVPKGISVEVDSSF 115

HSP 2 Score: 38.1206 bits (87), Expect = 1.086e-50
Identity = 16/21 (76.19%), Postives = 19/21 (90.48%), Query Frame = -3

Query:   23 INQNPFPNRTSFFQSIRLSGC 85
            +++NPFPN TSFFQSIRLS C
Sbjct:  116 LSKNPFPNCTSFFQSIRLSRC 136

[Close]

BLAST of CX287669 vs. ExPASy Swiss-Prot
Match: YCF72_SACOF (Uncharacterized protein ycf72 OS=Saccharum officinarum GN=ycf72-1 PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 4.086e-50
Identity = 85/98 (86.73%), Postives = 88/98 (89.80%), Query Frame = -1

Query:   88 TTPLTTGRFPSQHLDPALPKLFWFAPTFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFATAPAALANCPPFPSVISMLCMAVPKGISVEVDSSF 381
            TTPLTTGR PSQHLDPALPKLFWF PT PTCPTVA+QF D KRTSP+GN  VA+ PSFAISFATAPAALANCPP P VISMLCMAVPKGISVEVDSSF
Sbjct:   18 TTPLTTGRLPSQHLDPALPKLFWFTPTLPTCPTVAKQFWDTKRTSPDGNLKVANLPSFAISFATAPAALANCPPLPRVISMLCMAVPKGISVEVDSSF 115

HSP 2 Score: 38.1206 bits (87), Expect = 4.086e-50
Identity = 16/21 (76.19%), Postives = 19/21 (90.48%), Query Frame = -3

Query:   23 INQNPFPNRTSFFQSIRLSGC 85
            +++NPFPN TSFFQSIRLS C
Sbjct:  116 LSKNPFPNCTSFFQSIRLSRC 136

[Close]

BLAST of CX287669 vs. ExPASy Swiss-Prot
Match: YCF72_SACHY (Uncharacterized protein ycf72 OS=Saccharum hybrid GN=ycf72-1 PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 4.086e-50
Identity = 85/98 (86.73%), Postives = 88/98 (89.80%), Query Frame = -1

Query:   88 TTPLTTGRFPSQHLDPALPKLFWFAPTFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFATAPAALANCPPFPSVISMLCMAVPKGISVEVDSSF 381
            TTPLTTGR PSQHLDPALPKLFWF PT PTCPTVA+QF D KRTSP+GN  VA+ PSFAISFATAPAALANCPP P VISMLCMAVPKGISVEVDSSF
Sbjct:   18 TTPLTTGRLPSQHLDPALPKLFWFTPTLPTCPTVAKQFWDTKRTSPDGNLKVANLPSFAISFATAPAALANCPPLPRVISMLCMAVPKGISVEVDSSF 115

HSP 2 Score: 38.1206 bits (87), Expect = 4.086e-50
Identity = 16/21 (76.19%), Postives = 19/21 (90.48%), Query Frame = -3

Query:   23 INQNPFPNRTSFFQSIRLSGC 85
            +++NPFPN TSFFQSIRLS C
Sbjct:  116 LSKNPFPNCTSFFQSIRLSRC 136

[Close]

BLAST of CX287669 vs. ExPASy Swiss-Prot
Match: YCF72_MAIZE (Uncharacterized protein ycf72 OS=Zea mays GN=ycf72-1 PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 6.942e-50
Identity = 85/98 (86.73%), Postives = 88/98 (89.80%), Query Frame = -1

Query:   88 TTPLTTGRFPSQHLDPALPKLFWFAPTFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFATAPAALANCPPFPSVISMLCMAVPKGISVEVDSSF 381
            TTPLTTGR PSQHLDPALPKLFWF PT PTCPTVA+QF D KRTSP+GN  VA+ PSFAISFATAPAALANCPP P VISMLCMAVPKGISVEVDSSF
Sbjct:   18 TTPLTTGRLPSQHLDPALPKLFWFTPTLPTCPTVAKQFWDTKRTSPDGNLKVANLPSFAISFATAPAALANCPPLPRVISMLCMAVPKGISVEVDSSF 115

HSP 2 Score: 37.3502 bits (85), Expect = 6.942e-50
Identity = 16/20 (80.00%), Postives = 18/20 (90.00%), Query Frame = -3

Query:   23 NQNPFPNRTSFFQSIRLSGC 82
            ++NPFPN TSFFQSIRLS C
Sbjct:  117 SKNPFPNCTSFFQSIRLSRC 136

[Close]

BLAST of CX287669 vs. ExPASy Swiss-Prot
Match: RK2_CITSI (50S ribosomal protein L2, chloroplastic OS=Citrus sinensis GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 1.616e-45
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 2

Query:  107 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 379
            TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV
Sbjct:  131 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 221

[Close]

BLAST of CX287669 vs. ExPASy Swiss-Prot
Match: RK2_BUXMI (50S ribosomal protein L2, chloroplastic OS=Buxus microphylla GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 1.616e-45
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 2

Query:  107 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 379
            TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV
Sbjct:  129 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 219

[Close]

BLAST of CX287669 vs. ExPASy Swiss-Prot
Match: RK2_NYMAL (50S ribosomal protein L2, chloroplastic OS=Nymphaea alba GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 3.599e-45
Identity = 90/91 (98.90%), Postives = 91/91 (100.00%), Query Frame = 2

Query:  107 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 379
            TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATL+LPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV
Sbjct:  131 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLRLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 221

The following BLAST results are available for this feature:

BLAST of CX287669 vs. ExPASy Swiss-Prot

BLAST of CX287669 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
YCF72_ORYSJ	1.086e-50	87.76	Uncharacterized protein ycf72 OS=Oryza sativa subs...	[more]
YCF72_ORYSI	1.086e-50	87.76	Uncharacterized protein ycf72 OS=Oryza sativa subs...	[more]
YCF72_ORYSA	1.086e-50	87.76	Uncharacterized protein ycf72 OS=Oryza sativa GN=y...	[more]
YCF72_ORYNI	1.086e-50	87.76	Uncharacterized protein ycf72 OS=Oryza nivara GN=y...	[more]
YCF72_SACOF	4.086e-50	86.73	Uncharacterized protein ycf72 OS=Saccharum officin...	[more]
YCF72_SACHY	4.086e-50	86.73	Uncharacterized protein ycf72 OS=Saccharum hybrid ...	[more]
YCF72_MAIZE	6.942e-50	86.73	Uncharacterized protein ycf72 OS=Zea mays GN=ycf72...	[more]
RK2_CITSI	1.616e-45	100.00	50S ribosomal protein L2, chloroplastic OS=Citrus ...	[more]
RK2_BUXMI	1.616e-45	100.00	50S ribosomal protein L2, chloroplastic OS=Buxus m...	[more]
RK2_NYMAL	3.599e-45	98.90	50S ribosomal protein L2, chloroplastic OS=Nymphae...	[more]

Pages

Properties


Property Name	Value
Genbank description	C01012B01SK Veg1 Citrus clementina cDNA clone C01012B01, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX287669 ID=CX287669; Name=CX287669; organism=Citrus clementina; type=EST; length=381bp
ATCTGTATAGATATCATCATCTACATCCAGAAAGCCGTATGCTTTGGAAG
AAGCTTGTACGGTTTGGGAAGGGGTTTTGATTGATCAAAAAGATGAATCT
ACTTCAACCGATATGCCCTTAGGCACGGCCATACATAACATAGAAATCAC
ACTTGGAAAGGGTGGACAATTAGCTAGAGCAGCGGGTGCTGTAGCGAAAC
TGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGGGAG
GTCCGTTTGATATCCAAAAACTGCTCAGCAACAGTCGGACAAGTGGGGAA
TGTTGGGGCGAACCAGAAAAGTTTGGGTAGAGCCGGATCTAAATGTTGGC
TAGGGAAGCGTCCTGTAGTAAGAGGAGTAGT