CX287670

Overview
NameCX287670
Unique NameCX287670
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length451
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX287670 vs. ExPASy Swiss-Prot
Match: P2_ARATH (Probable NADP-dependent oxidoreductase P2 OS=Arabidopsis thaliana GN=P2 PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 2.015e-18
Identity = 44/73 (60.27%), Postives = 56/73 (76.71%), Query Frame = 3 
Query:   60 MVSNKQVILKDFVSGFPKETDMYVTTSSIELKVPQGSNGVLLKNLYLSCDPYMRPRMTKGEGS--YIESFKPG 272
            M +NKQVI KD VSGFPKE+D   TT+++EL+VP+GS  VL+KNLYLSCDPYMR RM K + S    +++ PG
Sbjct:    1 MTTNKQVIFKDHVSGFPKESDFNFTTTTVELRVPEGSKSVLVKNLYLSCDPYMRSRMGKPDPSSALAQAYAPG 73
[Close]
BLAST of CX287670 vs. ExPASy Swiss-Prot
Match: P1_ARATH (Probable NADP-dependent oxidoreductase P1 OS=Arabidopsis thaliana GN=P1 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 5.862e-18
Identity = 43/72 (59.72%), Postives = 57/72 (79.17%), Query Frame = 3 
Query:   66 SNKQVILKDFVSGFPKETDMYVTTSSIELKVPQGSNGVLLKNLYLSCDPYMRPRMTKGEGS---YIESFKPG 272
            +NKQVILKD+VSGFP E+D   TT+++EL+VP+G+N VL+KNLYLSCDPYMR RM K + S     +++ PG
Sbjct:    4 TNKQVILKDYVSGFPTESDFDFTTTTVELRVPEGTNSVLVKNLYLSCDPYMRIRMGKPDPSTAALAQAYTPG 75
The following BLAST results are available for this feature:
BLAST of CX287670 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
P2_ARATH2.015e-1860.27Probable NADP-dependent oxidoreductase P2 OS=Arabi... [more]
P1_ARATH5.862e-1859.72Probable NADP-dependent oxidoreductase P1 OS=Arabi... [more]
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Properties
Property NameValue
Genbank descriptionC01012B02SK Veg1 Citrus clementina cDNA clone C01012B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287670 ID=CX287670; Name=CX287670; organism=Citrus clementina; type=EST; length=451bp
ATGCTAGAGTTCTTTGTGTTTCATATTATCCAAAAAGAAAGAAAAAACGA
ATGGCTGAAATGGTGAGTAACAAGCAAGTGATATTGAAAGACTTTGTGTC
TGGTTTCCCAAAAGAAACAGACATGTATGTAACCACAAGCTCCATAGAAT
TGAAGGTGCCACAAGGTTCAAATGGGGTTCTGTTAAAGAACCTGTACTTG
TCTTGTGATCCATACATGCGACCAAGAATGACCAAAGGGGAAGGATCTTA
TATTGAATCCTTTAAACCCGGCTTGGTAATTTGTGCACTCACTCTCATAG
CCACTCTTTTCATTTCCATGGCTTCTTATTCTTTTGCTTTAGGAATTTTA
TTATTGAATATATTGTCAATGAACTTAAGTTCATGGGTTCAGCTTATTTT
TTGAAGATACTTAACATCAAATTGGTAAATTATGTTCCCTCTATTCTTTT
A
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