CX287673

Overview
NameCX287673
Unique NameCX287673
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length576
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig71 contig Ccv1_Contig71:1..576. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287673 vs. ExPASy Swiss-Prot
Match: RK29_ARATH (50S ribosomal protein L29, chloroplastic OS=Arabidopsis thaliana GN=RPL29 PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.071e-37
Identity = 89/155 (57.42%), Postives = 106/155 (68.39%), Query Frame = 3
Query:  117 MSLSIAS--TTTITFPTEPFSKIPKSTFNGIQIRQSWPIRTPLRFATXXXXXXXXXTVVMMAKREEEMKEIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFXXXXXXXXXXLTVKRERELEEGINKRLSRKLDRQWKKSIVVRPPPSL 575
            +SLSIA+  T  I       +    S+F+G++I+     R P   A          +VVMM+KRE E+KEIR+KTTE++ EEVVDLKGELFMLRLQKS RNEFKSS+F          LTVKRERE++EGI KRLSRKLDRQWKKSIV RPPPSL
Sbjct:    2 LSLSIATPGTAAIFRRGTASATSTSSSFHGVRIQHQVSARVPA--AATISSSSPKPSVVMMSKREAELKEIRSKTTEQLQEEVVDLKGELFMLRLQKSARNEFKSSDFRRMKKQVARMLTVKREREIKEGIKKRLSRKLDRQWKKSIVPRPPPSL 154          
BLAST of CX287673 vs. ExPASy Swiss-Prot
Match: RK29_MAIZE (50S ribosomal protein L29, chloroplastic OS=Zea mays GN=RPL29 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.369e-33
Identity = 80/154 (51.95%), Postives = 102/154 (66.23%), Query Frame = 3
Query:  114 TMSLSIASTTTITFPTEPFSKIPKSTFNGIQIRQSWPIRTPLRFATXXXXXXXXXTVVMMAKREEEMKEIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFXXXXXXXXXXLTVKRERELEEGINKRLSRKLDRQWKKSIVVRPPPSL 575
            TMSL+ AS    + P    ++ P + F  I++  +   R                 +V MAKRE+E++EIRA TTE++ EEVVDLKGELF+LRL++S R EFK+SEF          LTVKRERE+E+GINKRLSRKLDR+WK+SIVVRPPPSL
Sbjct:    3 TMSLAAASPLA-SIPRGIAAQAPCAAFLSIRLGGATATRFAGLAVASQPAERRAAAMVAMAKREQELEEIRAMTTEQMEEEVVDLKGELFLLRLKRSARQEFKNSEFSRMRKRIARMLTVKREREIEQGINKRLSRKLDRKWKQSIVVRPPPSL 155          
The following BLAST results are available for this feature:
BLAST of CX287673 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RK29_ARATH2.071e-3757.4250S ribosomal protein L29, chloroplastic OS=Arabid... [more]
RK29_MAIZE2.369e-3351.9550S ribosomal protein L29, chloroplastic OS=Zea ma... [more]
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Properties
Property NameValue
Genbank descriptionC01012B05SK Veg1 Citrus clementina cDNA clone C01012B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287673 ID=CX287673; Name=CX287673; organism=Citrus clementina; type=EST; length=576bp
AATATAAAAACAGAAGGAGAAGCCAACCTTATCTGTTGCTCTCTCAAGTA
CGTAATTAGCTCAGTTCACGAAGGCACATTGCTCACTCAACGCAACGAAG
CAGCCAAAAGATGACGATGAGTCTCTCAATTGCTTCGACAACAACAATCA
CTTTCCCAACAGAGCCCTTCTCGAAAATTCCAAAGTCAACCTTTAACGGC
ATCCAAATTCGTCAGTCGTGGCCTATTCGCACGCCGTTGCGTTTCGCGAC
TTCGTCGTCGGGAAGCCGTGGTTCGTCGACAGTGGTGATGATGGCAAAGA
GAGAAGAAGAAATGAAGGAAATTAGAGCCAAAACGACAGAGGAGATTAAC
GAAGAGGTCGTTGATTTGAAGGGTGAGCTGTTTATGCTACGTCTTCAAAA
ATCAGTTCGCAATGAGTTCAAGTCTAGTGAATTTCGTCGTATGCGCAGAA
GGATTGCTCGCATGCTTACTGTTAAACGTGAAAGAGAGCTTGAGGAAGGA
ATTAACAAGAGATTGTCCAGAAAGCTTGATCGACAATGGAAGAAAAGCAT
TGTAGTTAGACCACCTCCATCCTTGA
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