CX287674

Overview
NameCX287674
Unique NameCX287674
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length602
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287674 vs. ExPASy Swiss-Prot
Match: ERF3_YEAST (Eukaryotic peptide chain release factor GTP-binding subunit OS=Saccharomyces cerevisiae GN=SUP35 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.156e-21
Identity = 47/124 (37.90%), Postives = 75/124 (60.48%), Query Frame = 1
Query:   25 DILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDXXXXXXXXXXXXXXXNGAIVVCRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTEL 396
            DI  GFVL+S   P+ +VT+F+AQ+ I+EL   +I  AG+  V+H+H  +EE  IV+LLH+++                G  V+  ++    +C E + D+ QLGRFTLR +G T+A+GK+ ++
Sbjct:  562 DISPGFVLTSPKNPIKSVTKFVAQIAIVEL--KSIIAAGFSCVMHVHTAIEEVHIVKLLHKLEKGTNRKSKKPPAFAKKGMKVIAVLETEAPVCVETYQDYPQLGRFTLRDQGTTIAIGKIVKI 683          
BLAST of CX287674 vs. ExPASy Swiss-Prot
Match: ERF3_DEBHA (Eukaryotic peptide chain release factor GTP-binding subunit OS=Debaryomyces hansenii GN=SUP35 PE=3 SV=4)

HSP 1 Score: 100.908 bits (250), Expect = 5.156e-21
Identity = 46/124 (37.10%), Postives = 75/124 (60.48%), Query Frame = 1
Query:   25 DILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDXXXXXXXXXXXXXXXNGAIVVCRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTEL 396
            D+  G+VL+S  KP+  +T F AQ+ I+EL   +I + G+  V+H+H  +EE   +EL H+++                G  V+  ++ N S+C E +AD+ QLGRFTLR +G T+A+GK+T++
Sbjct:  579 DLAPGYVLTSPLKPIKTITRFEAQIAIVEL--KSILSNGFSCVMHLHTAIEEVTFIELKHKLEKGTNRKSKKPPAFAKKGMKVIAILETNESVCAETYADYPQLGRFTLRDQGTTIAIGKITKV 700          
BLAST of CX287674 vs. ExPASy Swiss-Prot
Match: ERF3_KLULA (Eukaryotic peptide chain release factor GTP-binding subunit OS=Kluyveromyces lactis GN=SUP35 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 8.794e-21
Identity = 47/124 (37.90%), Postives = 74/124 (59.68%), Query Frame = 1
Query:   25 DILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDXXXXXXXXXXXXXXXNGAIVVCRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTEL 396
            +I +GFVL+S   PV  VT F+AQ+ I+EL   +I +AG+  V+HIH  +EE  +  LLH+++                G  ++  I+ N  +C E + D+ QLGRFTLR +G T+A+GK+ ++
Sbjct:  576 EISAGFVLTSPKNPVKNVTRFVAQIAIVEL--KSIMSAGFSCVMHIHTAIEEVTVTRLLHKLEKGSNRKSKKPPAFAKKGMKIIAVIETNEPVCVETYDDYPQLGRFTLRDQGTTIAIGKIVKI 697          
BLAST of CX287674 vs. ExPASy Swiss-Prot
Match: ERF3_SCHPO (Eukaryotic peptide chain release factor GTP-binding subunit OS=Schizosaccharomyces pombe GN=sup35 PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.500e-20
Identity = 51/124 (41.13%), Postives = 72/124 (58.06%), Query Frame = 1
Query:   25 DILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDXXXXXXXXXXXXXXXNGAIVVCRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTEL 396
            D+ +G+VL+S   PV A T FIAQ+ ILEL   +I T GY  V+HIH  VEE    +LLH++D                G  ++  ++    +C E+F D+  +GRFTLR +G TVAVGKV ++
Sbjct:  540 DVQTGYVLTSTKNPVHATTRFIAQIAILEL--PSILTTGYSCVMHIHTAVEEVSFAKLLHKLDKTNRKSKKPPMFAT-KGMKIIAELETQTPVCMERFEDYQYMGRFTLRDQGTTVAVGKVVKI 660          
BLAST of CX287674 vs. ExPASy Swiss-Prot
Match: ERF3_ZYGRO (Eukaryotic peptide chain release factor GTP-binding subunit OS=Zygosaccharomyces rouxii GN=SUP35 PE=3 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 4.364e-20
Identity = 45/124 (36.29%), Postives = 73/124 (58.87%), Query Frame = 1
Query:   25 DILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDXXXXXXXXXXXXXXXNGAIVVCRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTEL 396
            DI  GFVL+S   PV  VT F+AQ+ I+EL   +I ++G+  V+H+H  +EE  I +LLH+++                G  ++  ++    +C E + D+ QLGRFTLR +G T+A+GK+ ++
Sbjct:  539 DIAPGFVLTSPKNPVKNVTRFVAQVAIVEL--KSILSSGFSCVMHVHTAIEEVRITKLLHKLERGTNRKSKKPPAFAKKGMKIIAVLETERPVCVETYQDYPQLGRFTLRDQGTTIAIGKIVKI 660          
BLAST of CX287674 vs. ExPASy Swiss-Prot
Match: ERF3_PICPI (Eukaryotic peptide chain release factor GTP-binding subunit OS=Pichia pinus GN=SUP2 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.364e-20
Identity = 46/124 (37.10%), Postives = 72/124 (58.06%), Query Frame = 1
Query:   25 DILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDXXXXXXXXXXXXXXXNGAIVVCRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTEL 396
            D+ +G+VLSS+  PV  VT F AQ+ I+EL   +I + G+  V+H+H  +EE    +LLH +                 G  ++  ++    +C E + D+ QLGRFTLR +G+T+A+GKVT+L
Sbjct:  619 DLSAGYVLSSINHPVKTVTRFEAQIAIVEL--KSILSTGFSCVMHVHTAIEEVTFTQLLHNLQKGTNRRSKKAPAFAKQGMKIIAVLETTEPVCIESYDDYPQLGRFTLRDQGQTIAIGKVTKL 740          
BLAST of CX287674 vs. ExPASy Swiss-Prot
Match: ERF3_CANMA (Eukaryotic peptide chain release factor GTP-binding subunit OS=Candida maltosa GN=SUP35 PE=3 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 5.700e-20
Identity = 46/124 (37.10%), Postives = 75/124 (60.48%), Query Frame = 1
Query:   25 DILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDXXXXXXXXXXXXXXXNGAIVVCRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTEL 396
            D+  G+VL+S   PV  VT+F AQ+ I+EL   +I + G+  V+H+H  +EE + VEL H+++                G  ++  ++V+  +C E + D+ QLGRFTLR +G T+A+GK+T+L
Sbjct:  590 DLQPGYVLTSPKNPVKTVTKFEAQIAIVEL--KSILSNGFSCVMHLHTAIEEVKFVELKHKLEKGTNRKSKKPPAFAKKGMKIIAILEVSEPVCAETYKDYPQLGRFTLRDQGTTIAIGKITKL 711          
BLAST of CX287674 vs. ExPASy Swiss-Prot
Match: ERF3_CANAL (Eukaryotic peptide chain release factor GTP-binding subunit OS=Candida albicans GN=SUP35 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.658e-19
Identity = 45/124 (36.29%), Postives = 73/124 (58.87%), Query Frame = 1
Query:   25 DILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDXXXXXXXXXXXXXXXNGAIVVCRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTEL 396
            D+  G+VL+S   PV  VT F AQ+ I+EL   +I + G+  V+H+H  +EE + +EL H+++                G  ++  ++V   +C E + D+ QLGRFTLR +G T+A+GK+T+L
Sbjct:  593 DLQPGYVLTSPKNPVKTVTRFEAQIAIVEL--KSILSNGFSCVMHLHTAIEEVKFIELKHKLEKGTNRKSKKPPAFAKKGMKIIAILEVGELVCAETYKDYPQLGRFTLRDQGTTIAIGKITKL 714          
BLAST of CX287674 vs. ExPASy Swiss-Prot
Match: ERF3A_MOUSE (Eukaryotic peptide chain release factor GTP-binding subunit ERF3A OS=Mus musculus GN=Gspt1 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.516e-17
Identity = 48/124 (38.71%), Postives = 67/124 (54.03%), Query Frame = 1
Query:   25 DILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDXXXXXXXXXXXXXXXNGAIVVCRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTEL 396
            +IL GF+L  +     +   F AQ+ I+E    +I   GY AVLHIH  +EE EI  L+  +D                  + + R++   +IC E F DF Q+GRFTLR EGKT+A+GKV +L
Sbjct:  373 EILPGFILCDLNNLCHSGRTFDAQIVIIE--HKSIICPGYNAVLHIHTCIEEVEITALICLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMGRFTLRDEGKTIAIGKVLKL 494          
BLAST of CX287674 vs. ExPASy Swiss-Prot
Match: ERF3B_PONAB (Eukaryotic peptide chain release factor GTP-binding subunit ERF3B OS=Pongo abelii GN=GSPT2 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 7.704e-17
Identity = 47/124 (37.90%), Postives = 66/124 (53.23%), Query Frame = 1
Query:   25 DILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDXXXXXXXXXXXXXXXNGAIVVCRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTEL 396
            +IL GF+L   +    +   F  Q+ I+E    +I   GY AVLHIH  +EE EI  L+  +D                  + + R++   +IC E F DF Q+GRFTLR EGKT+A+GKV +L
Sbjct:  502 EILPGFILCDPSNLCHSGRTFDVQIVIIE--HKSIICPGYNAVLHIHTCIEEVEITALISLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMGRFTLRDEGKTIAIGKVLKL 623          
The following BLAST results are available for this feature:
BLAST of CX287674 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
ERF3_YEAST5.156e-2137.90Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3_DEBHA5.156e-2137.10Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3_KLULA8.794e-2137.90Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3_SCHPO1.500e-2041.13Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3_ZYGRO4.364e-2036.29Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3_PICPI4.364e-2037.10Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3_CANMA5.700e-2037.10Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3_CANAL1.658e-1936.29Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3A_MOUSE4.516e-1738.71Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3B_PONAB7.704e-1737.90Eukaryotic peptide chain release factor GTP-bindin... [more]

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Properties
Property NameValue
Genbank descriptionC01012B06SK Veg1 Citrus clementina cDNA clone C01012B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287674 ID=CX287674; Name=CX287674; organism=Citrus clementina; type=EST; length=602bp
CTCGTGCCGAATTCGGCACGAGGAGATATACTATCTGGTTTTGTCTTGTC
AAGTGTTGCAAAACCAGTAGCCGCAGTCACTGAATTTATTGCCCAGTTGC
AGATTCTTGAGTTGCTGGACAATGCAATTTTTACGGCCGGCTACAAGGCT
GTTTTACACATTCATGCTGTTGTCGAGGAATGTGAGATTGTTGAACTGCT
ACATCAAATCGATCTGAAGACGAAGAAACCGATGAAAAAGAAAGTTCTCT
TTGTTAAGAATGGTGCTATTGTTGTTTGCCGTATTCAGGTGAACAATTCG
ATATGCACTGAAAAGTTTGCAGATTTTGCGCAGCTGGGAAGGTTCACACT
TCGCACTGAAGGGAAAACAGTAGCAGTGGGTAAGGTGACTGAGCTTCCTA
CAGTAAGCAGTAGTGCTTAAAACAATTTTGGCATCTAGAGGTGAGTTGAA
TCAACAAGGCTTTTTGAGTAGCTATTTTTGTCCCAGCTGAACGGGGTTTG
AATTGAAATAGCATCTCCTGCAACTTATTGAAATTCATTGATTCAGCCTT
TGCGAGAAACACACAGCTCTTAATGGCGCTTATGTAGTGCACTGCGTTAT
TG
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