CX287678

Overview
NameCX287678
Unique NameCX287678
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length604
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10315 contig Ccv1_Contig10315:42..645. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287678 vs. ExPASy Swiss-Prot
Match: DR102_ARATH (DNA-damage-repair/toleration protein DRT102 OS=Arabidopsis thaliana GN=DRT102 PE=2 SV=2)

HSP 1 Score: 229.95 bits (585), Expect = 7.441e-60
Identity = 117/187 (62.57%), Postives = 140/187 (74.87%), Query Frame = 2
Query:   59 ADAAAPHPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGLKPWDEKLSCFFDKSMTEMPLIGKNDKLDS-----DSSGSTCSI 604
            A +A   PLKII GAD FGA LKDA+V+HLRSL IDVED G S YYS G+EVGRRVS+S SSE   RGLV CGTGVGVA+FANK PGV+A TCL+  DA+N RSI+NCNVLA SG+ TS E+A+EI D W+KTPFK+PCPASG +PW   +S F D S++EM  IGK+   DS     D + ++C I
Sbjct:    4 AVSAVDQPLKIITGADDFGASLKDAMVTHLRSLGIDVEDTGVSSYYSAGSEVGRRVSASSSSEV--RGLVCCGTGVGVAMFANKFPGVYAATCLSVEDAVNARSISNCNVLAFSGIKTSPETALEIFDAWIKTPFKSPCPASGSEPWSSVISSFLDNSLSEMSQIGKSTAGDSTTKKIDETTASCVI 188          
BLAST of CX287678 vs. ExPASy Swiss-Prot
Match: RPIB_ECOLI (Ribose-5-phosphate isomerase B OS=Escherichia coli (strain K12) GN=rpiB PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.520e-12
Identity = 46/132 (34.85%), Postives = 65/132 (49.24%), Query Frame = 2
Query:   86 KIIAGADSFGAELKDALVSHLRSLNIDVEDLGT-----SDYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFK 466
            KI  G D  G  LK  +V+HL    ++V D GT     +DY    ++V   V+  +       G++ CGTGVG++I ANK  G+ A  C  P  A  +R  N+ NVLA        E A  I+D WL   ++
Sbjct:    3 KIAFGCDHVGFILKHEIVAHLVERGVEVIDKGTWSSERTDYPHYASQVALAVAGGE----VDGGILICGTGVGISIAANKFAGIRAVVCSEPYSAQLSRQHNDTNVLAFGSRVVGLELAKMIVDAWLGAQYE 130          
BLAST of CX287678 vs. ExPASy Swiss-Prot
Match: LACB_STRMU (Galactose-6-phosphate isomerase subunit lacB OS=Streptococcus mutans GN=lacB PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 4.891e-11
Identity = 41/129 (31.78%), Postives = 64/129 (49.61%), Query Frame = 2
Query:   83 LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEV-GRRVSSSDSSETTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFK 466
            +KI  G D    ++K  L  HL+    +V D+GT D+      + G++V  + SS     G+  CGTGVG++  ANK PGV          AL ++   N NV++  G    K    +I+D ++K  +K
Sbjct:    1 MKIAIGCDHIVTDVKMELSKHLKEEGYEVLDVGTYDFTRTHYPIFGKKVGEAVSSGEADLGVCMCGTGVGISNAANKVPGVRTALVRDMTSALYSKEELNANVVSFGGAIIGKLLLFDIVDAFIKAQYK 129          
The following BLAST results are available for this feature:
BLAST of CX287678 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
DR102_ARATH7.441e-6062.57DNA-damage-repair/toleration protein DRT102 OS=Ara... [more]
RPIB_ECOLI1.520e-1234.85Ribose-5-phosphate isomerase B OS=Escherichia coli... [more]
LACB_STRMU4.891e-1131.78Galactose-6-phosphate isomerase subunit lacB OS=St... [more]
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Properties
Property NameValue
Genbank descriptionC01012B10SK Veg1 Citrus clementina cDNA clone C01012B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287678 ID=CX287678; Name=CX287678; organism=Citrus clementina; type=EST; length=604bp
TGAACTCATCCGGTCATCCCTCAGAATAGTCAACTCATAGTCAACCATGG
CTGAAAACGCTGACGCCGCTGCTCCTCACCCTCTCAAAATCATCGCCGGC
GCCGACTCCTTTGGTGCTGAATTGAAAGACGCTTTGGTCTCCCACCTTCG
GTCACTCAACATAGACGTGGAAGATCTCGGCACTTCTGATTACTACTCCA
TCGGCGCCGAGGTCGGCCGCCGTGTCTCCTCTTCCGATTCCTCCGAAACC
ACCACTCGCGGCCTCGTCGCCTGCGGAACCGGAGTCGGCGTCGCAATCTT
CGCCAACAAAAACCCCGGCGTCTTCGCCACGACGTGTCTCACTCCCGCCG
ACGCCCTCAACACCCGCTCCATCAACAACTGCAACGTCCTCGCTGTCTCA
GGTATGTCCACTTCCAAAGAATCCGCCGTCGAAATCCTCGACACGTGGCT
TAAAACCCCTTTTAAGGCCCCATGCCCCGCGTCGGGTTTGAAGCCATGGG
ATGAGAAATTGTCGTGTTTTTTCGACAAGTCGATGACCGAAATGCCCCTT
ATTGGTAAAAATGATAAATTAGATAGTGATTCTAGTGGCAGCACTTGTAG
CATA
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