CX287685

Overview
NameCX287685
Unique NameCX287685
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287685 vs. ExPASy Swiss-Prot
Match: ATL1J_ARATH (RING-H2 finger protein ATL1J OS=Arabidopsis thaliana GN=ATL1J PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.270e-50
Identity = 98/200 (49.00%), Postives = 130/200 (65.00%), Query Frame = 2
Query:    8 FIGKFHSRKLLLQHPYNQQPI----TAAPPPYPAKGCLHFNVVMFFSILISAVVCSLGFHFLIRCVFLRCSRLLDSESNANSSTPLGKSS-GIQQESLRDFPVVNYSTELKLSGSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIETCEESVGFSQTSSSEHSVVVPETVDSIRPLEPEG 592
            F+G F +RKLLL  P++   +     A  P    +  L  NV+M  S+LI  ++C LG H++IRC F R SR + SE  ++ STP   S+ GI++++LR FPVV+YS E+ L G   ECVICLS+F  GE LR+LPKCNHGFHV CIDKWL+ H +CPKCRHCL+ETC++ +G    + S  S      +  I PLEPEG
Sbjct:   17 FLGSFVTRKLLLHDPFDHNSLRVFAVAPSPLITHENNLKGNVLMLLSVLICGIICCLGLHYIIRCAFRRSSRFMISEPISSLSTPRSSSNKGIKKKALRMFPVVSYSREMNLPGIGEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQHHLTCPKCRHCLVETCQKILGDFSQADSMASTPTESVIVRIDPLEPEG 216          
BLAST of CX287685 vs. ExPASy Swiss-Prot
Match: ATL1I_ARATH (RING-H2 finger protein ATL1I OS=Arabidopsis thaliana GN=ATL1I PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.404e-49
Identity = 97/199 (48.74%), Postives = 129/199 (64.82%), Query Frame = 2
Query:   11 IGKFHSRKLLLQHPYN---QQPITAAPPPYPA-KGCLHFNVVMFFSILISAVVCSLGFHFLIRCVFLRCSRLLDSESNANSSTPLGKSS-GIQQESLRDFPVVNYSTELKLSGSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIETCEESVGFSQTSSSEHSVVVPETVDSIRPLEPEG 592
            +G F SRKLLL +P++   Q+    AP P    +  L  NV+M  S+LI  ++C LG H++IRC F R S  + SE  A  STP G S+ GI +++LR FPVV+YS E+ L G   ECVICLS+F  GE +R+LPKC+HGFHV CIDKWL+ H +CPKCRHCL+ETC++ +G    +    +      +  I PLEPEG
Sbjct:   19 LGGFVSRKLLLHNPFDHNTQRAFAVAPSPLITHENNLSGNVLMLLSVLICGIICCLGLHYIIRCAFRRTSSFMISEPIAGLSTPCGSSNKGINKKALRMFPVVSYSPEMNLPGLGEECVICLSDFVSGEQIRMLPKCHHGFHVRCIDKWLQQHLTCPKCRHCLVETCQKILGDFSQADQVAATPTASVIVRIAPLEPEG 217          
BLAST of CX287685 vs. ExPASy Swiss-Prot
Match: ATL1K_ARATH (RING-H2 finger protein ATL1K OS=Arabidopsis thaliana GN=ATL1K PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.648e-48
Identity = 102/205 (49.76%), Postives = 139/205 (67.80%), Query Frame = 2
Query:    8 FIGKFHSRKLLLQHPYN---QQPITAAPPPYPA-KGCLHFNVVMFFSILISAVVCSLGFHFLIRCVFLRCSRLLDSESNANSSTPLGKSS-GIQQESLRDFPVVNYSTELKLSGSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIETCEESVG-FSQTSS--SEHSVVVPETVDSIRPLEPEGII 598
            F+G F SRKLLL +P++   Q+    AP P    +  L  NV+M  SILI  ++C LG H++IRC   R +R + SE   + S+  G S+ GI++++LR FPVV+YS E+ L G D ECVICLS+F  GE LR+LPKCNHGFHV CIDKWL+ H +CPKCR+CL+ETC++ +G FSQ  S  +E + +V   + +I PLEP  I+
Sbjct:   17 FLGGFVSRKLLLHNPFDHNTQRAFAVAPSPLITHENNLSGNVMMLLSILICGIICCLGLHYIIRCALRRSTRFMISEPVPSLSSTRGSSNKGIKKKALRMFPVVSYSPEMNLPGLDEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQQHLTCPKCRNCLVETCQKILGDFSQADSVTAEPTEIV---IVTIVPLEPTEIV 218          
BLAST of CX287685 vs. ExPASy Swiss-Prot
Match: ATL1L_ARATH (RING-H2 finger protein ATL1L OS=Arabidopsis thaliana GN=ATL1L PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.458e-48
Identity = 98/196 (50.00%), Postives = 131/196 (66.84%), Query Frame = 2
Query:    5 DFIGKFHSRKLLLQHPYNQQPITAAPPPYPAKGCLHFNVVMFFSILISAVVCSLGFHFLIRCVFLRCSRLLDSESNANSSTPLGKSSGIQQESLRDFPVVNYSTELKLSGSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIETCEESVGFSQTSSSEHSVVVPETVD-SIRPLEPE 589
            + +G  +SRKLL  H ++Q P T AP PY        NVVM  S+L+ A+VCSLG + +IRC  LRCS L+ SE+  ++      ++G+++++L+ F  V+YSTEL L G DTEC ICLSEF   E +++LP C+HGFHV CIDKWL SHSSCP CRHCLI+TCE+    SQTSS   +    +++   I PLEPE
Sbjct:   20 EILGSSYSRKLLF-HTHDQSP-TPAPSPYVGDNNFDANVVMVLSVLLCALVCSLGLNSIIRCA-LRCSNLVPSEAGGDNYPVRLTNTGVKRKALKSFQTVSYSTELNLPGLDTECAICLSEFVAEERVKLLPTCHHGFHVRCIDKWLSSHSSCPTCRHCLIQTCEKIADCSQTSSLNSTQPPQDSIILQIAPLEPE 212          
BLAST of CX287685 vs. ExPASy Swiss-Prot
Match: ATL5B_ARATH (RING-H2 finger protein ATL5B OS=Arabidopsis thaliana GN=ATL5B PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.975e-28
Identity = 61/126 (48.41%), Postives = 89/126 (70.63%), Query Frame = 2
Query:  116 NVVMFFSILISAVVCSLGFHFLIRCVFLRCSR-LLDSESNANSSTPLGKSSGIQQESLRDFPVVNYSTELKLSGSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIE 490
            ++V+  + L+ A++C+LG + ++RCV LRC+R    +E   +++  + K  GI++ +L+  PV +YS ELK+    TEC+ICL +F  GE++RVLPKCNHGFHV CID WL SHSSCP CR  L+E
Sbjct:   40 HMVIILAALLCALICALGINSVLRCV-LRCTRRFTPNEDPVDTNANVAK--GIKKRALKVIPVDSYSPELKMKA--TECLICLGDFVEGETVRVLPKCNHGFHVKCIDTWLLSHSSCPTCRQSLLE 160          
BLAST of CX287685 vs. ExPASy Swiss-Prot
Match: ATL1R_ARATH (RING-H2 finger protein ATL1R OS=Arabidopsis thaliana GN=ATL1R PE=2 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.279e-26
Identity = 62/166 (37.35%), Postives = 91/166 (54.82%), Query Frame = 2
Query:   38 LLQHPYNQQPITAAPPPYPAKGCLHFNVVMFFSILISAVVCSLGFHFLIRCVFLRCSRLLDSESNANSSTPLGKSSGIQQESLRDFPVVNYSTELKLSGSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIET-CEESVGFSQTSSS 532
            LLQ   +  P  A+PP        + ++V+  ++L+ A+ C +G   + RC +LR     +     +       + G++++ LR  P + YS +   +    EC ICL+EFA G+ LRVLP+C HGFHV CID WL SHSSCP CR  L+ T C +  G   +SSS
Sbjct:    8 LLQEANSTSPAEASPP-------FNSDLVLILAVLLCALTCIIGLIAVSRCAWLRRIASRNRSDQTHPPPVAAANKGLKKKVLRSLPKLTYSPDSPPAEKLVECAICLTEFAAGDELRVLPQCGHGFHVSCIDTWLGSHSSCPSCRQILVVTRCHKCGGLPGSSSS 166          
BLAST of CX287685 vs. ExPASy Swiss-Prot
Match: ATL5A_ARATH (RING-H2 finger protein ATL5A OS=Arabidopsis thaliana GN=ATL5A PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.859e-26
Identity = 59/126 (46.83%), Postives = 83/126 (65.87%), Query Frame = 2
Query:  116 NVVMFFSILISAVVCSLGFHFLIRCVFLRCSRLLDSESNANSSTPLGKSSGIQQESLRDFPVVNY-STELKLSGSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIE 490
            N+V+  + L+ A++ +LG + ++RC  +RC   L S + A +   +   +G+++  L+ FPV  Y S E+K++   TEC ICL EFA GE +RVLP CNH FH+ CID WL SHSSCP CRH LIE
Sbjct:   33 NMVIILAALLCALILALGLNSILRCA-MRCGFGLSSSAAAGT---VADRAGLKKRELKKFPVAEYGSGEVKIAA--TECAICLGEFADGERVRVLPPCNHSFHMSCIDTWLVSHSSCPNCRHSLIE 152          
BLAST of CX287685 vs. ExPASy Swiss-Prot
Match: ATL3C_ARATH (RING-H2 finger protein ATL3C OS=Arabidopsis thaliana GN=ATL3C PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 8.288e-26
Identity = 65/159 (40.88%), Postives = 94/159 (59.12%), Query Frame = 2
Query:   38 LLQHPYNQQPITAAPPPYPAKGCLHF--NVVMFFSILISAVVCSLGFHFLIRCVFLRCSRLLDSE------SNANSSTP-LGKSSGIQQESLRDFPVVNYSTELKLSGSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLI 487
            LL  P    P  A P P       +F  N+V+  + L+ A++C+L  +  +RCV LR +R   S+      SNAN++   L  ++G+++++L+  PV  Y + + +    TEC+ICL +F  GE +RVLPKCNHGFHV CID WL S SSCP CR  L+
Sbjct:    4 LLLEPQANAPANANPKPKGGINDTYFDTNMVIILAALLCALICALSLNSALRCV-LRITRRFTSDDQVSNASNANANLGRLAAATGLKKQALKQIPVGLYGSGI-IDMKATECLICLGDFEDGEKVRVLPKCNHGFHVRCIDTWLLSRSSCPTCRQSLL 160          
BLAST of CX287685 vs. ExPASy Swiss-Prot
Match: ATL1B_ARATH (RING-H2 finger protein ATL1B OS=Arabidopsis thaliana GN=ATL1B PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.197e-24
Identity = 60/160 (37.50%), Postives = 92/160 (57.50%), Query Frame = 2
Query:   71 TAAPPPYPAKGCLHFNVVMFFSILISAVVCSLGFHFLIRCVFLRC----SRLLDSESNANSSTPLGKSS-GIQQESLRDFPVVNYSTELKLSGSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCL-IETCEESVGFSQTSSS 532
            T +P    +   L+ ++V+  + L+ A++C LG   + RCV+LR     +R +      +   P+  ++ G++++ L+  P + +S E   S    EC ICL+EF+ G+ LRVLP+C HGFHV CID WL SHSSCP CR  L +  C +  G   +SSS
Sbjct:   14 TPSPAIDNSTAALNSDLVVILAALLCALICVLGLIAVSRCVWLRRLAAGNRTVSGSQTQSPQPPVAAANKGLKKKVLQSLPKLTFSPESPESEKFAECAICLAEFSAGDELRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILVVARCHKCGGLPGSSSS 173          
BLAST of CX287685 vs. ExPASy Swiss-Prot
Match: ATL2A_ARATH (RING-H2 finger protein ATL2A OS=Arabidopsis thaliana GN=ATL2A PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.758e-24
Identity = 59/160 (36.88%), Postives = 88/160 (55.00%), Query Frame = 2
Query:   71 TAAPPPYPAKGCL--HFNVVMFFSILISAVVCSLGFHFLIRCVFLRCSRLLDSESNANSSTPLGKSSGIQQESLRDFPVVNYSTELKLSGS------DTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIETCEESVGFSQTS 526
            TAAPPP P++  +    ++V+  S L+ A++C  G   ++RC +LR          A   +P   + G+++++L+  P   ++     SG+       TEC ICL++FA GE +RVLP C H FHV CIDKWL S SSCP CR  L     +  G + T+
Sbjct:   10 TAAPPPQPSEEMIAAESDMVVILSALLCALICVAGLAAVVRCAWLR-------RFTAGGDSP-SPNKGLKKKALQSLPRSTFTAAESTSGAAAEEGDSTECAICLTDFADGEEIRVLPLCGHSFHVECIDKWLVSRSSCPSCRRILTPVRCDRCGHASTA 161          
The following BLAST results are available for this feature:
BLAST of CX287685 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
ATL1J_ARATH1.270e-5049.00RING-H2 finger protein ATL1J OS=Arabidopsis thalia... [more]
ATL1I_ARATH1.404e-4948.74RING-H2 finger protein ATL1I OS=Arabidopsis thalia... [more]
ATL1K_ARATH2.648e-4849.76RING-H2 finger protein ATL1K OS=Arabidopsis thalia... [more]
ATL1L_ARATH3.458e-4850.00RING-H2 finger protein ATL1L OS=Arabidopsis thalia... [more]
ATL5B_ARATH3.975e-2848.41RING-H2 finger protein ATL5B OS=Arabidopsis thalia... [more]
ATL1R_ARATH1.279e-2637.35RING-H2 finger protein ATL1R OS=Arabidopsis thalia... [more]
ATL5A_ARATH4.859e-2646.83RING-H2 finger protein ATL5A OS=Arabidopsis thalia... [more]
ATL3C_ARATH8.288e-2640.88RING-H2 finger protein ATL3C OS=Arabidopsis thalia... [more]
ATL1B_ARATH1.197e-2437.50RING-H2 finger protein ATL1B OS=Arabidopsis thalia... [more]
ATL2A_ARATH7.758e-2436.88RING-H2 finger protein ATL2A OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionC01012C05SK Veg1 Citrus clementina cDNA clone C01012C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287685 ID=CX287685; Name=CX287685; organism=Citrus clementina; type=EST; length=663bp
CCATGATTTTATCGGAAAATTTCACTCCAGAAAATTACTACTGCAACATC
CTTATAACCAACAACCAATCACAGCTGCTCCTCCTCCTTACCCTGCTAAA
GGTTGCTTGCACTTCAATGTTGTGATGTTCTTCTCAATCCTCATAAGCGC
CGTAGTTTGCTCACTCGGGTTTCATTTTCTCATCAGGTGCGTATTCTTAA
GGTGCTCAAGACTGTTAGACTCTGAATCTAATGCAAACTCCTCGACCCCG
TTAGGCAAGTCTTCGGGAATTCAGCAAGAATCACTTCGGGATTTTCCTGT
GGTGAATTACTCAACAGAGTTGAAGCTTTCAGGCTCGGACACAGAATGTG
TTATATGTCTCTCAGAGTTTGCGCCAGGTGAGAGTCTGCGGGTGCTGCCG
AAATGCAACCATGGATTTCACGTTCATTGCATCGATAAGTGGCTGAGATC
GCATTCTTCTTGCCCGAAATGTAGGCATTGCCTGATTGAAACATGCGAGG
AAAGTGTAGGGTTTAGTCAGACTAGCTCTTCAGAACATTCAGTGGTAGTG
CCAGAAACTGTCGACAGTATTAGGCCTCTGGAACCTGAAGGTATCATATG
CAATTATGGGGGAATGAGCTAAGCAATGACCTTGGGAACTCAATTTCATT
CTCGTGGCGTGGC
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