CX287687

Overview
NameCX287687
Unique NameCX287687
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length401
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14429 contig Ccv1_Contig14429:467..867. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287687 vs. ExPASy Swiss-Prot
Match: SRG1_ARATH (Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.129e-35
Identity = 73/135 (54.07%), Postives = 93/135 (68.89%), Query Frame = 2
Query:    2 EFFKLPLEEKMACAQLPNSIEGYGQAFVVSKDQKLDWGDMLFLLTQPANIRTTSLWPTIPTSLRATIEEYSLELQKVTIFLLKLMAKNLGIEPGKLASLFE--DGIQGIRMNYYPPCAQANRVIGLTPHSDSVAL 400
            +FF LP+EEK    Q P+ IEG+GQAFVVS+DQKLDW D+ F   QP  +R   L+P +P   R T+E YS E+Q V   L+  MA+ L I+P +L  LF+  D +Q +RMNYYPPC Q ++VIGLTPHSDSV L
Sbjct:  105 DFFNLPMEEKKKFWQRPDEIEGFGQAFVVSEDQKLDWADLFFHTVQPVELRKPHLFPKLPLPFRDTLEMYSSEVQSVAKILIAKMARALEIKPEELEKLFDDVDSVQSMRMNYYPPCPQPDQVIGLTPHSDSVGL 239          
BLAST of CX287687 vs. ExPASy Swiss-Prot
Match: NCS1_COPJA (S-norcoclaurine synthase 1 OS=Coptis japonica GN=NCS1 PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 9.260e-30
Identity = 65/133 (48.87%), Postives = 84/133 (63.16%), Query Frame = 2
Query:    2 EFFKLPLEEKMACAQLPNSIEGYGQAFVVSKDQKLDWGDMLFLLTQPANIRTTSLWPTIPTSLRATIEEYSLELQKVTIFLLKLMAKNLGIEPGKLASLFEDGIQGIRMNYYPPCAQANRVIGLTPHSDSVAL 400
            +FF+LP +EK A  QLPN +EGYGQAFV S++QKLDW DM FL+T+P   R    WPT PTS R T+E+YS+ELQKV + L  +MAKNLG+E   L       +        P  +     +GL+PHSD+  L
Sbjct:  103 DFFRLPFKEKNAYRQLPNGMEGYGQAFVTSEEQKLDWADMHFLITKPVQERNMRFWPTSPTSFRETMEKYSMELQKVAMCLTGMMAKNLGLESEILTKPLRT-VFNREDELLPSMSSCGEGLGLSPHSDATGL 234          
BLAST of CX287687 vs. ExPASy Swiss-Prot
Match: LDOX_PERFR (Leucoanthocyanidin dioxygenase OS=Perilla frutescens GN=ANS PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.827e-16
Identity = 46/138 (33.33%), Postives = 72/138 (52.17%), Query Frame = 2
Query:    2 EFFKLPLEEKMACA--QLPNSIEGYGQAFVVSKDQKLDWGDMLFLLTQPANIRTTSLWPTIPTSLRATIEEYSLELQKVTIFLLKLMAKNLGIEPGKLASLF---EDGIQGIRMNYYPPCAQANRVIGLTPHSDSVAL 400
            EFF+LP+EEK A A  Q   +++GYG     +   +L+W D  F    P +    S+WPT P        EY+ +L+ +   +L +++  LG+E G+L       ED I  +++N+YP C Q    +G   H+D  AL
Sbjct:  107 EFFELPVEEKEAYANDQAAGNVQGYGSKLANNASGQLEWEDYFFHCVYPEHKTDLSIWPTKPPDYIPATSEYAKQLRALATKILSVLSIGLGLEKGRLEKEVGGAEDLIVQMKINFYPKCPQPELALGWEAHTDVSAL 244          
BLAST of CX287687 vs. ExPASy Swiss-Prot
Match: FNSI_PETCR (Flavone synthase OS=Petroselinum crispum GN=FNSI PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.610e-16
Identity = 43/129 (33.33%), Postives = 67/129 (51.94%), Query Frame = 2
Query:    2 EFFKLPLEEKMACAQLPNSIEGYGQAFVVSKDQKLDWGDMLFLLTQPANIRTTSLWPTIPTSLRATIEEYSLELQKVTIFLLKLMAKNLGIEPGKLASLFEDGIQGIRMNYYPPCAQANRVIGLTPHSD 388
            EFF LP EEK+          G+  + V+  D  +DW + +   + P N R  S WP  P   R+T E YS +L  +   LL+++++ +G+E G L     D  Q + +NYYP C Q +  +G+  H+D
Sbjct:   92 EFFALPAEEKLEYDTTGGKRGGFTISTVLQGDDAMDWREFVTYFSYPINARDYSRWPKKPEGWRSTTEVYSEKLMVLGAKLLEVLSEAMGLEKGDLTKACVDMEQKVLINYYPTCPQPDLTLGVRRHTD 220          
BLAST of CX287687 vs. ExPASy Swiss-Prot
Match: LDOX_MALDO (Leucoanthocyanidin dioxygenase OS=Malus domestica GN=ANS PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.695e-15
Identity = 44/137 (32.12%), Postives = 71/137 (51.82%), Query Frame = 2
Query:    5 FFKLPLE--EKMACAQLPNSIEGYGQAFVVSKDQKLDWGDMLFLLTQPANIRTTSLWPTIPTSLRATIEEYSLELQKVTIFLLKLMAKNLGIEPGKL---ASLFEDGIQGIRMNYYPPCAQANRVIGLTPHSDSVAL 400
            FF LP+E  EK A  Q    I+GYG     +   +L+W D  F    P + R  S+WP  P        EY+ +L+++   +LK+++  LG++ G+L       E+ +  +++NYYP C Q    +G+  H+D  AL
Sbjct:  106 FFDLPIEQKEKYANDQASGKIQGYGSKLANNASGQLEWEDYFFHCVYPEDKRDLSIWPQTPADYIEATAEYAKQLRELATKVLKVLSLGLGLDEGRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSAL 242          
BLAST of CX287687 vs. ExPASy Swiss-Prot
Match: LDOX_VITVI (Leucoanthocyanidin dioxygenase OS=Vitis vinifera PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.442e-15
Identity = 45/137 (32.85%), Postives = 70/137 (51.09%), Query Frame = 2
Query:    5 FFKLPLEEKMACA--QLPNSIEGYGQAFVVSKDQKLDWGDMLFLLTQPANIRTTSLWPTIPTSLRATIEEYSLELQKVTIFLLKLMAKNLGIEPGKL---ASLFEDGIQGIRMNYYPPCAQANRVIGLTPHSDSVAL 400
            FF LP+EEK   A  Q    I GYG     +   +L+W D  F L  P + R  ++WP  P+       EYS++L+ +   +L +++  LG+E G+L       E+ +   ++NYYP C Q    +G+  H+D  AL
Sbjct:  108 FFNLPMEEKEKYANDQASGKIAGYGSKLANNASGQLEWEDYFFHLIFPEDKRDMTIWPKTPSDYVPATCEYSVKLRSLATKILSVLSLGLGLEEGRLEKEVGGMEELLLQKKINYYPKCPQPELALGVEAHTDVSAL 244          
BLAST of CX287687 vs. ExPASy Swiss-Prot
Match: LDOX_PETHY (Leucoanthocyanidin dioxygenase OS=Petunia hybrida GN=ANT17 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.414e-15
Identity = 44/137 (32.12%), Postives = 70/137 (51.09%), Query Frame = 2
Query:    5 FFKLPLEEKMACA--QLPNSIEGYGQAFVVSKDQKLDWGDMLFLLTQPANIRTTSLWPTIPTSLRATIEEYSLELQKVTIFLLKLMAKNLGIEPGKL---ASLFEDGIQGIRMNYYPPCAQANRVIGLTPHSDSVAL 400
            FF  P+EEK   A  Q   +++GYG     S   +L+W D  F    P + R  S+WP  PT       EY+ +++ +   +L +++  LG+E G+L       ED +  +++NYYP C Q    +G+  H+D  AL
Sbjct:  106 FFDQPVEEKEKYANDQANGNVQGYGSKLANSACGQLEWEDYFFHCAFPEDKRDLSIWPKNPTDYTPATSEYAKQIRALATKILTVLSIGLGLEEGRLEKEVGGMEDLLLQMKINYYPKCPQPELALGVEAHTDVSAL 242          
BLAST of CX287687 vs. ExPASy Swiss-Prot
Match: LDOX_ARATH (Leucoanthocyanidin dioxygenase OS=Arabidopsis thaliana GN=LDOX PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.099e-14
Identity = 45/138 (32.61%), Postives = 68/138 (49.28%), Query Frame = 2
Query:    2 EFFKLPLEEKMACA--QLPNSIEGYGQAFVVSKDQKLDWGDMLFLLTQPANIRTTSLWPTIPTSLRATIEEYSLELQKVTIFLLKLMAKNLGIEPGKL---ASLFEDGIQGIRMNYYPPCAQANRVIGLTPHSDSVAL 400
            EFF L +EEK   A  Q    I+GYG     +   +L+W D  F L  P   R  S+WP  P+       EY+  L+ +   + K ++  LG+EP +L       E+ +  +++NYYP C Q    +G+  H+D  AL
Sbjct:  101 EFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSAL 238          
BLAST of CX287687 vs. ExPASy Swiss-Prot
Match: FLS_MALDO (Flavonol synthase/flavanone 3-hydroxylase OS=Malus domestica GN=FLS PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.197e-14
Identity = 49/137 (35.77%), Postives = 72/137 (52.55%), Query Frame = 2
Query:    2 EFFKLPLEEKMACAQLPNS--IEGYGQAFVVSKDQ----KLDWGDMLFLLTQPANIRTTSLWPTIPTSLRATIEEYSLELQKVTIFLLKLMAKNLGIEPGKL-ASLFEDGIQG-IRMNYYPPCAQANRVIGLTPHSD 388
            EFF+LP EEK A A+ P+S  IEGYG        +    K  W D LF    P ++     WP  P S R   EEY+  L  V   L +L++  LG+E  +L  +   D ++  +++NYYPPC + +  +G+  H+D
Sbjct:   89 EFFELPQEEKEAYAKPPDSASIEGYGTKLFKEISEGDTTKKGWVDNLFNKIWPPSVVNYQFWPKNPPSYREANEEYAKHLHNVVEKLFRLLSLGLGLEGQELKKAAGGDNLEYLLKINYYPPCPRPDLALGVVAHTD 225          
BLAST of CX287687 vs. ExPASy Swiss-Prot
Match: FLS_PETCR (Flavonol synthase/flavanone 3-hydroxylase OS=Petroselinum crispum GN=FLS PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.454e-14
Identity = 45/137 (32.85%), Postives = 71/137 (51.82%), Query Frame = 2
Query:    2 EFFKLPLEEKMACAQLPN--SIEGYGQAFVVSKDQKLDWGDMLFLLTQPANIRTTSLWPTIPTSLRATIEEYSLELQKVTIFLLKLMAKNLGIEPGKL--ASLFEDGIQGIRMNYYPPCAQANRVIGLTPHSDSVAL 400
            EFF+LP +EK   A+      +EGYG         K  W D LF +  P +    + WP  P   R   EEY++ L+ V   L + ++  +G+E  +L  AS  +D I  +++NYYPPC + +  +G+  H+D  A+
Sbjct:   93 EFFELPQQEKEVIAKPEGYQGVEGYGTKLQKELGGKKGWVDHLFHIIWPKSAVNYNFWPNNPPLYREANEEYAVALRGVVDKLFEALSLGIGLEKHELKKASGGDDLIYMLKINYYPPCPRPDLALGVVAHTDMSAI 229          
The following BLAST results are available for this feature:
BLAST of CX287687 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
SRG1_ARATH1.129e-3554.07Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 ... [more]
NCS1_COPJA9.260e-3048.87S-norcoclaurine synthase 1 OS=Coptis japonica GN=N... [more]
LDOX_PERFR5.827e-1633.33Leucoanthocyanidin dioxygenase OS=Perilla frutesce... [more]
FNSI_PETCR7.610e-1633.33Flavone synthase OS=Petroselinum crispum GN=FNSI P... [more]
LDOX_MALDO1.695e-1532.12Leucoanthocyanidin dioxygenase OS=Malus domestica ... [more]
LDOX_VITVI6.442e-1532.85Leucoanthocyanidin dioxygenase OS=Vitis vinifera P... [more]
LDOX_PETHY8.414e-1532.12Leucoanthocyanidin dioxygenase OS=Petunia hybrida ... [more]
LDOX_ARATH1.099e-1432.61Leucoanthocyanidin dioxygenase OS=Arabidopsis thal... [more]
FLS_MALDO3.197e-1435.77Flavonol synthase/flavanone 3-hydroxylase OS=Malus... [more]
FLS_PETCR5.454e-1432.85Flavonol synthase/flavanone 3-hydroxylase OS=Petro... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01012C07SK Veg1 Citrus clementina cDNA clone C01012C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287687 ID=CX287687; Name=CX287687; organism=Citrus clementina; type=EST; length=401bp
GGAATTCTTTAAGCTGCCATTAGAGGAGAAGATGGCTTGCGCACAGCTGC
CAAATAGCATTGAAGGTTATGGGCAAGCTTTCGTTGTCTCCAAGGATCAA
AAGCTTGATTGGGGAGACATGCTTTTTCTTCTTACTCAACCTGCCAATAT
TAGAACCACGAGTCTCTGGCCTACCATCCCTACTTCTTTAAGAGCAACCA
TAGAGGAATACTCTTTGGAACTGCAAAAGGTTACAATCTTTCTGTTGAAG
TTGATGGCTAAGAATTTGGGGATTGAACCTGGGAAACTTGCAAGCTTGTT
TGAAGATGGTATACAAGGAATAAGAATGAATTATTATCCACCATGTGCCC
AGGCCAACAGGGTTATTGGTCTCACTCCACACTCTGACTCTGTTGCATTA
A
back to top