CX287688

Overview
NameCX287688
Unique NameCX287688
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length423
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14542 contig Ccv1_Contig14542:237..659. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287688 vs. ExPASy Swiss-Prot
Match: A115_TOBAC (Auxin-induced protein PCNT115 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 4.422e-64
Identity = 120/145 (82.76%), Postives = 131/145 (90.34%), Query Frame = 2
Query:    2 GYRGRVELATKFGI-----RYEDGQYSYCGDPAYVRATCEASLKRLDVDCIDLYYQHRIDTKVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWSRDVEEEIVPTCRELGIGIVAYSPLGRGFLSS 421
            G R RV LATKFGI     +  +G+ +  GDPAYVRA CEASLKRLD+DCIDLYYQHR+DT+VPIE+T+GELKKLVEEGK+KYIGLSEASASTIRRAHAVHPITAVQLEWSLWSRDVEEEI+PTCRELGIGIVAYSPLGRGFLSS
Sbjct:   80 GTRERVVLATKFGIVLGDEKKAEGKRAVHGDPAYVRAACEASLKRLDIDCIDLYYQHRVDTRVPIEITVGELKKLVEEGKLKYIGLSEASASTIRRAHAVHPITAVQLEWSLWSRDVEEEIIPTCRELGIGIVAYSPLGRGFLSS 224          
BLAST of CX287688 vs. ExPASy Swiss-Prot
Match: IN22_MAIZE (IN2-2 protein OS=Zea mays GN=IN2-2 PE=2 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 1.680e-63
Identity = 117/140 (83.57%), Postives = 124/140 (88.57%), Query Frame = 2
Query:    2 GYRGRVELATKFGIRYEDGQYSYCGDPAYVRATCEASLKRLDVDCIDLYYQHRIDTKVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWSRDVEEEIVPTCRELGIGIVAYSPLGRGFLSS 421
            G R +VELATKFG+ + DG+    GDPAYVR  CE S KRL VDCIDLYYQHRID +VPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWSRD EE+I+PTCRELGIGIVAYSPLGRGF SS
Sbjct:   80 GVREKVELATKFGVSFADGKREIHGDPAYVRTACEGSFKRLGVDCIDLYYQHRIDKRVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWSRDAEEDIIPTCRELGIGIVAYSPLGRGFFSS 219          
BLAST of CX287688 vs. ExPASy Swiss-Prot
Match: YAKC_SCHPO (Aldo-keto reductase yakc [NADP+] OS=Schizosaccharomyces pombe GN=yakc PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 4.768e-34
Identity = 76/144 (52.78%), Postives = 98/144 (68.06%), Query Frame = 2
Query:    2 GYRGRVELATKFGIRY--EDGQYSYCGDPAYVRATCEASLKRLDVDCIDLYYQHRIDTKVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWSRDVEEE---IVPTCRELGIGIVAYSPLGRGFLS 418
            G R  + LATKFG     E G+ S   +P Y+    + SLKRL +DCIDLYY HR   + PIE  +G LKK VE GKI+YIGLSE SA+TIRRA AV+P++AVQ+E+S +S ++E     ++  CRE  I IV Y+PLGRGFL+
Sbjct:   73 GRRKEIFLATKFGYEKNPETGELSLNNEPDYIEKALDLSLKRLGIDCIDLYYVHRFSGETPIEKIMGALKKCVEAGKIRYIGLSECSANTIRRAAAVYPVSAVQVEYSPFSLEIERPEIGVMKACRENNITIVCYAPLGRGFLT 216          
BLAST of CX287688 vs. ExPASy Swiss-Prot
Match: PLR1_SCHPO (Pyridoxal reductase OS=Schizosaccharomyces pombe GN=plr1 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.142e-22
Identity = 57/117 (48.72%), Postives = 77/117 (65.81%), Query Frame = 2
Query:   74 GDPAYVRATCEASLKRL-DVDCIDLYYQHRIDTKVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWSRDVEEE-IVPTCRELGIGIVAYSPLGRGFLS 418
            G+P +V  + E  +  L     +DL+   R+D  VPIE T+  LK  V+ GKI  +GLSE SA TI+RAHAV PI AV++E+SL+SRD+E   I+  CR+L I I+AYSP  RG L+
Sbjct:   95 GNPDFVSKSVENVIAHLRGTKKLDLFQCARVDPNVPIETTMKTLKGFVDSGKISCVGLSEVSAETIKRAHAVVPIAAVEVEYSLFSRDIETNGIMDICRKLSIPIIAYSPFCRGLLT 211          
BLAST of CX287688 vs. ExPASy Swiss-Prot
Match: PLR2_SCHPO (Probable pyridoxal reductase 2 OS=Schizosaccharomyces pombe GN=SPCC1281.04 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.297e-20
Identity = 55/117 (47.01%), Postives = 78/117 (66.67%), Query Frame = 2
Query:   74 GDPAYVRATCEASLKRL-DVDCIDLYYQHRIDTKVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWSRDVEEE-IVPTCRELGIGIVAYSPLGRGFLS 418
            GDP  V  + + +L RL     +DL+   R+D KVPIE T+  LK  V+ G+I  +GLSEASA +I+RA A+ PI AV+ E+SL+SRD+E+  I+ TC +L I I+AY+P   G L+
Sbjct:   95 GDPESVTKSVKNALTRLRGKKKLDLFQCARVDHKVPIETTMKALKAFVDSGEISCVGLSEASAESIKRALAIVPIAAVETEYSLFSRDIEKNGILDTCTQLSIPIIAYAPFCHGLLT 211          
BLAST of CX287688 vs. ExPASy Swiss-Prot
Match: YCCK_BACSU (Uncharacterized oxidoreductase yccK OS=Bacillus subtilis GN=yccK PE=3 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 5.118e-20
Identity = 54/139 (38.85%), Postives = 74/139 (53.24%), Query Frame = 2
Query:    2 GYRGRVELATKFGIRYEDGQYSYCGDPAYVRATCEASLKRLDVDCIDLYYQHRIDTKVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWSRDVEEEIVPTCRELGIGIVAYSPLGRGFLS 418
            G R  + +ATK   +  DG         ++R+  E SLKRL  D IDLYY H  D K P+    G LK+L +EGKIK IG S      ++  +A   +   Q E+SL  RD E+E++P C + GI  + Y PL  G L+
Sbjct:   76 GVRNELIIATKGAHKEVDGSIELDNSREFLRSEVEKSLKRLKTDYIDLYYVHFPDGKTPLAEVAGTLKELKDEGKIKAIGASNLDYQQLQDFNADGYLEVFQAEYSLIQRDAEKELLPYCEKQGISFIPYFPLASGLLT 214          
BLAST of CX287688 vs. ExPASy Swiss-Prot
Match: GS69_BACSU (General stress protein 69 OS=Bacillus subtilis GN=yhdN PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 1.541e-16
Identity = 51/139 (36.69%), Postives = 77/139 (55.40%), Query Frame = 2
Query:    2 GYRGRVELATKFGIRYEDGQYSYCGDPAYVRATCEASLKRLDVDCIDLYYQHRIDTKVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWSRDVEEEIVPTCRELGIGIVAYSPLGRGFLS 418
            G R +V LATK  + +++ Q     + A +    E SLKRL  D IDLY  H  D  VPIE T   +K+L + GKI+ IG+S  S   +    AV P+  +Q  ++L+ R++EE ++P  ++  I  + Y  L RG L+
Sbjct:   74 GKRDQVILATKTALDWKNNQLFRHANRARIVEEVENSLKRLQTDYIDLYQVHWPDPLVPIEETAEVMKELYDAGKIRAIGVSNFSIEQMDTFRAVAPLHTIQPPYNLFEREMEESVLPYAKDNKITTLLYGSLCRGLLT 212          
BLAST of CX287688 vs. ExPASy Swiss-Prot
Match: YH5B_SCHPO (Uncharacterized oxidoreductase C215.11c OS=Schizosaccharomyces pombe GN=SPBC215.11c PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.433e-16
Identity = 48/139 (34.53%), Postives = 80/139 (57.55%), Query Frame = 2
Query:    5 YRGRVELATKFG-IRYEDGQYSYCGDPAYVRATCEASLKRLDVDCIDLYYQHRIDTKVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWSRDVEEEIVPTCRELGIGIVAYSPLGRGFLS 418
            Y+G + +ATK G +R    ++  CG P ++R     S++RL V  IDL+  HRID KVP +    E+  + +EG I+++GLSE +   I+ A    P+ +VQ  ++L +R   E+++  C + GI  + + PL  G L+
Sbjct:   87 YKGLI-IATKGGLVRTGPNEWHPCGAPKFLRQEVLMSMRRLGVKQIDLWQLHRIDPKVPRKDQFSEIAAMKKEGLIRHVGLSEVTVDDIKEAEQYFPVVSVQNLFNLVNRK-NEKVLEYCEQKGIAFIPWYPLASGALA 223          
BLAST of CX287688 vs. ExPASy Swiss-Prot
Match: YGHZ_ECO57 (Uncharacterized protein yghZ OS=Escherichia coli O157:H7 GN=yghZ PE=4 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.906e-15
Identity = 45/144 (31.25%), Postives = 79/144 (54.86%), Query Frame = 2
Query:    5 YRGRVELATKFGIRYEDGQYSYCGDPAYVRATCEASLKRLDVDCIDLYYQHRIDTKVPIEVTIGELKKLVEEGKIKYIGLSEASAS-TIRRAHAVH----PITAVQLEWSLWSRDVEEE-IVPTCRELGIGIVAYSPLGRGFLS 418
            YR  + ++TK G     G Y   G   Y+ A+ + SLKR+ ++ +D++Y HR+D   P+E T   L   V+ GK  Y+G+S  S   T +    +H    P+   Q  ++L +R V++  ++ T +  G+G +A++PL +G L+
Sbjct:   88 YRDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQSGKALYVGISSYSPERTQKMVELLHEWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGLLT 231          
BLAST of CX287688 vs. ExPASy Swiss-Prot
Match: YGHZ_ECOLI (Uncharacterized protein yghZ OS=Escherichia coli (strain K12) GN=yghZ PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.442e-14
Identity = 43/144 (29.86%), Postives = 78/144 (54.17%), Query Frame = 2
Query:    5 YRGRVELATKFGIRYEDGQYSYCGDPAYVRATCEASLKRLDVDCIDLYYQHRIDTKVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAV-----HPITAVQLEWSLWSRDVEEE-IVPTCRELGIGIVAYSPLGRGFLS 418
            YR  + ++TK G     G Y   G   Y+ A+ + SLKR+ ++ +D++Y HR+D   P+E T   L   V+ GK  Y+G+S  S    ++   +      P+   Q  ++L +R V++  ++ T +  G+G +A++PL +G L+
Sbjct:   88 YRDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQSGKALYVGISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGLLT 231          
The following BLAST results are available for this feature:
BLAST of CX287688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
A115_TOBAC4.422e-6482.76Auxin-induced protein PCNT115 OS=Nicotiana tabacum... [more]
IN22_MAIZE1.680e-6383.57IN2-2 protein OS=Zea mays GN=IN2-2 PE=2 SV=1[more]
YAKC_SCHPO4.768e-3452.78Aldo-keto reductase yakc [NADP+] OS=Schizosaccharo... [more]
PLR1_SCHPO7.142e-2248.72Pyridoxal reductase OS=Schizosaccharomyces pombe G... [more]
PLR2_SCHPO2.297e-2047.01Probable pyridoxal reductase 2 OS=Schizosaccharomy... [more]
YCCK_BACSU5.118e-2038.85Uncharacterized oxidoreductase yccK OS=Bacillus su... [more]
GS69_BACSU1.541e-1636.69General stress protein 69 OS=Bacillus subtilis GN=... [more]
YH5B_SCHPO3.433e-1634.53Uncharacterized oxidoreductase C215.11c OS=Schizos... [more]
YGHZ_ECO572.906e-1531.25Uncharacterized protein yghZ OS=Escherichia coli O... [more]
YGHZ_ECOLI1.442e-1429.86Uncharacterized protein yghZ OS=Escherichia coli (... [more]

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Properties
Property NameValue
Genbank descriptionC01012C08SK Veg1 Citrus clementina cDNA clone C01012C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287688 ID=CX287688; Name=CX287688; organism=Citrus clementina; type=EST; length=423bp
AGGGTACAGAGGAAGAGTTGAATTGGCTACTAAATTTGGTATCAGATATG
AGGATGGCCAGTACTCATACTGTGGGGATCCTGCTTATGTAAGAGCTACA
TGTGAGGCCAGCTTGAAGCGTCTGGATGTTGACTGTATTGATCTTTATTA
CCAACATCGCATTGACACTAAAGTCCCCATTGAAGTCACGATTGGGGAAC
TCAAGAAACTAGTTGAAGAGGGTAAAATAAAGTATATAGGTCTATCGGAG
GCTTCTGCTTCAACAATTAGACGAGCTCACGCCGTCCATCCAATAACAGC
TGTGCAGTTGGAATGGTCCTTGTGGTCACGAGATGTGGAGGAAGAGATTG
TTCCTACTTGCAGGGAACTTGGCATTGGAATTGTTGCTTACAGTCCTCTA
GGACGTGGGTTTCTTTCATCCGG
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