CX287689

Overview
NameCX287689
Unique NameCX287689
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length392
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9765 contig Ccv1_Contig9765:26..417. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287689 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 2.082e-37
Identity = 76/108 (70.37%), Postives = 84/108 (77.78%), Query Frame = 1
Query:   76 MAAATSGAVLNGLGSSFINGGKKSQALLAG--TNRVTXXXXXXXXXX-LPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAM 390
            M   ++ AVLNGL SSF+ GGKK+QALL    T RVT           + PKKSWIPAVK GGNL++PEWLDGSLPGD+GFDPLGLGKDPAFLKWYREAELIHGRWAM
Sbjct:    1 MTTTSATAVLNGLSSSFLTGGKKTQALLGAHVTARVTTPKRFVVAAAAVAPKKSWIPAVKSGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAM 108          
BLAST of CX287689 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 2.720e-37
Identity = 78/107 (72.90%), Postives = 82/107 (76.64%), Query Frame = 1
Query:   82 AATSGAVLNGLGSSFINGGKKSQALLAG--TNRVTXXXXXXXXXXLPP--KKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAM 390
            A TS AVLNGL SSF+ GG KSQALLA     RV           L    KKSWIPAV+GGGNL++PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAM
Sbjct:    2 ATTSAAVLNGLSSSFLTGGNKSQALLAAPLAARVGGAATPKRFTVLAAAAKKSWIPAVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAM 108          
BLAST of CX287689 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 4.342e-35
Identity = 75/113 (66.37%), Postives = 85/113 (75.22%), Query Frame = 1
Query:   76 MAAATSG-AVLNGLGSSFINGGKKS-QALLAGTNRV------TXXXXXXXXXXLPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAM 390
            MAAATS  A++NG  S F++GGKKS Q+LL   ++V      T            PKKSWIPAVKGGGN ++PEWLDGSLPGD+GFDPLGLGKDPAFLKWYREAELIHGRWAM
Sbjct:    1 MAAATSATAIVNGFTSPFLSGGKKSSQSLLFVNSKVGAGVSTTSRKLVVVAAAAAPKKSWIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAM 113          
BLAST of CX287689 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.514e-15
Identity = 35/59 (59.32%), Postives = 39/59 (66.10%), Query Frame = 1
Query:  214 PPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAM 390
            P +  W P          PEWLDGSLPGD+GFDPLGLG DP  LKW  +AEL+H RWAM
Sbjct:   63 PDRPLWFPGSTP------PEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAM 115          
BLAST of CX287689 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.518e-14
Identity = 40/110 (36.36%), Postives = 57/110 (51.82%), Query Frame = 1
Query:   61 VEIISMAAATSGAVLNGLGSSFINGGKKSQALLAGTNRVTXXXXXXXXXXLPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAM 390
            V   S ++  +G+++    +SF+ GG++ +     T               P +  W P          P WLDGSLPGD+GFDPLGL  DP  L+W ++AEL+H RWAM
Sbjct:   13 VAFSSPSSRRNGSIVGTTKASFL-GGRRLRVSKYSTTPTARSATTVCVAADPDRPLWFPGSTP------PPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAM 115          
BLAST of CX287689 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.810e-12
Identity = 31/57 (54.39%), Postives = 40/57 (70.18%), Query Frame = 1
Query:  220 KKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAM 390
            K  W+P       L +P +L GSLPGD GFDPLGL +DP  L+W+ +AEL++GRWAM
Sbjct:   53 KGEWLPG------LASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAM 103          
BLAST of CX287689 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.151e-11
Identity = 31/57 (54.39%), Postives = 40/57 (70.18%), Query Frame = 1
Query:  220 KKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAM 390
            K  W+P       L +P++L GSL GD GFDPLGL +DP  LKW+ +AEL++GRWAM
Sbjct:   54 KGEWLPG------LASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAM 104          
BLAST of CX287689 vs. ExPASy Swiss-Prot
Match: CB120_HORVU (Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20 PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.741e-11
Identity = 28/57 (49.12%), Postives = 41/57 (71.93%), Query Frame = 1
Query:  220 KKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAM 390
            K SW+P ++      +P +LDGSL GD GFDPL L +DP  L+W+ +A++++GRWAM
Sbjct:   33 KGSWLPGLQ------SPAYLDGSLEGDNGFDPLALAEDPEDLRWFVQADVVNGRWAM 83          
The following BLAST results are available for this feature:
BLAST of CX287689 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
CB4B_SOLLC2.082e-3770.37Chlorophyll a-b binding protein CP24 10B, chloropl... [more]
CB4A_SOLLC2.720e-3772.90Chlorophyll a-b binding protein CP24 10A, chloropl... [more]
CB4_SPIOL4.342e-3566.37Chlorophyll a-b binding protein CP24, chloroplasti... [more]
CB12_PETHY8.514e-1559.32Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB12_SOLLC5.518e-1436.36Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB24_PEA8.810e-1254.39Chlorophyll a-b binding protein P4, chloroplastic ... [more]
CB24_ARATH1.151e-1154.39Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB120_HORVU9.741e-1149.12Chlorophyll a-b binding protein 1B-20, chloroplast... [more]
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Properties
Property NameValue
Genbank descriptionC01012C09SK Veg1 Citrus clementina cDNA clone C01012C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287689 ID=CX287689; Name=CX287689; organism=Citrus clementina; type=EST; length=392bp
CTCGTGCCGAATTCGGCACGAGGATTGATTGACAGCCCATTCTGCAGCTA
CAGAAGTCAAGTAGAGATCATATCTATGGCGGCTGCAACATCCGGGGCTG
TGTTAAACGGATTGGGTTCTTCATTCATAAATGGTGGCAAGAAGAGCCAG
GCTCTTTTGGCTGGCACGAATAGAGTGACAAGTTCTAAAAAGTCAGTTGT
TGTAGCTGCTCTTCCACCTAAAAAATCTTGGATTCCTGCTGTTAAAGGTG
GTGGCAACCTCATTAATCCCGAATGGCTCGATGGCTCTCTCCCAGGTGAC
TACGGATTCGACCCACTTGGGCTTGGAAAGGACCCAGCATTCCTGAAATG
GTACAGAGAAGCAGAACTGATCCACGGACGATGGGCAATGGC
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