CX287693

Overview
NameCX287693
Unique NameCX287693
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length406
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287693 vs. ExPASy Swiss-Prot
Match: RC22_ARATH (UPF0057 membrane protein At2g24040 OS=Arabidopsis thaliana GN=At2g24040 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.742e-21
Identity = 42/52 (80.77%), Postives = 48/52 (92.31%), Query Frame = 3
Query:   96 GVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAIVFVDRDEYFDEYRRPLY 251
            GVCL+HGCCTVEF ICL+LT LGY+PGIIYA+YAI F+ RDEYFDEYRRP+Y
Sbjct:   21 GVCLRHGCCTVEFFICLILTCLGYLPGIIYAIYAICFLHRDEYFDEYRRPIY 72          
BLAST of CX287693 vs. ExPASy Swiss-Prot
Match: RC24_ARATH (UPF0057 membrane protein At4g30660 OS=Arabidopsis thaliana GN=At4g30660 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.847e-20
Identity = 41/53 (77.36%), Postives = 47/53 (88.68%), Query Frame = 3
Query:   96 GVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAIVFVDRDEYFDEYRRPLYA 254
            GVC + GCCTVEF ICL+LTILGYVPGIIYA+Y IVF  R+EYFDEYRRP+Y+
Sbjct:   21 GVCFRKGCCTVEFLICLVLTILGYVPGIIYAIYVIVFQHREEYFDEYRRPIYS 73          
BLAST of CX287693 vs. ExPASy Swiss-Prot
Match: OSR8_ORYSJ (Hydrophobic protein OSR8 OS=Oryza sativa subsp. japonica GN=OSR8 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.614e-14
Identity = 33/47 (70.21%), Postives = 40/47 (85.11%), Query Frame = 3
Query:   96 GVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAIVFVDRDEYFDEY 236
            GV L+ GCC++EFCICLLLTILGYVPGIIYA+Y +V +D D+Y  EY
Sbjct:   22 GVFLRFGCCSMEFCICLLLTILGYVPGIIYAVYVLVALDSDQYQREY 68          
BLAST of CX287693 vs. ExPASy Swiss-Prot
Match: RC23_ARATH (UPF0057 membrane protein At4g30650 OS=Arabidopsis thaliana GN=At4g30650 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.332e-14
Identity = 33/41 (80.49%), Postives = 37/41 (90.24%), Query Frame = 3
Query:   96 GVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAIVFVDRD 218
            GVCLK GCCTVEF ICL+LTILGY+PGIIYALY IVF +R+
Sbjct:   21 GVCLKRGCCTVEFLICLVLTILGYIPGIIYALYVIVFQNRE 61          
The following BLAST results are available for this feature:
BLAST of CX287693 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RC22_ARATH4.742e-2180.77UPF0057 membrane protein At2g24040 OS=Arabidopsis ... [more]
RC24_ARATH6.847e-2077.36UPF0057 membrane protein At4g30660 OS=Arabidopsis ... [more]
OSR8_ORYSJ5.614e-1470.21Hydrophobic protein OSR8 OS=Oryza sativa subsp. ja... [more]
RC23_ARATH7.332e-1480.49UPF0057 membrane protein At4g30650 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionC01012D02SK Veg1 Citrus clementina cDNA clone C01012D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287693 ID=CX287693; Name=CX287693; organism=Citrus clementina; type=EST; length=406bp
GGAAAAGGAAAATAGAAAAAAAAACACAAACAACAATGCCAAGTTGCTGT
GAAATCTGCTGCGAGATTTTGATCGCGATTTTGCTTCCTCCTTTGGGGGT
TTGCCTTAAACATGGTTGCTGCACTGTGGAGTTTTGCATCTGTTTGCTAC
TCACTATTCTAGGATACGTGCCTGGAATAATCTATGCACTATATGCCATT
GTATTTGTGGATCGTGACGAGTACTTTGATGAATACAGACGTCCCCTGTA
TGCTCCAGGACCATGATATCTCTTTATGTTCTCTTGATTTTCTCAATAAC
GCTATACTGTCATGATGTTGAACTCTTTCCTTTATAAAATTGTTATCTAA
GTTGTTTGACTTCTGAGTTTGATGAAAACTAAGTATTGGCTTAGTTTATG
CTGAAA
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