CX287697

Overview
NameCX287697
Unique NameCX287697
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length398
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig416 contig Ccv1_Contig416:508..905. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287697 vs. ExPASy Swiss-Prot
Match: VATE_CITUN (V-type proton ATPase subunit E OS=Citrus unshiu GN=VATE PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 5.796e-48
Identity = 97/109 (88.99%), Postives = 97/109 (88.99%), Query Frame = 3
Query:    3 LLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLXXXXXXXXXXXXSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 329
            LLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYL            SCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA
Sbjct:  122 LLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 230          
BLAST of CX287697 vs. ExPASy Swiss-Prot
Match: VATE_CITLI (V-type proton ATPase subunit E OS=Citrus limon GN=VATE PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 5.796e-48
Identity = 97/109 (88.99%), Postives = 97/109 (88.99%), Query Frame = 3
Query:    3 LLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLXXXXXXXXXXXXSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 329
            LLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYL            SCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA
Sbjct:  122 LLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 230          
BLAST of CX287697 vs. ExPASy Swiss-Prot
Match: VATE_GOSHI (V-type proton ATPase subunit E OS=Gossypium hirsutum GN=VATE PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 4.032e-33
Identity = 78/119 (65.55%), Postives = 84/119 (70.59%), Query Frame = 3
Query:    3 LLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVD----------HHIYLXXXXXXXXXXXXSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 329
            L+RLKEP VLLRCRK+D HLVESVL+SAKEEYA K+ VHPPEIIVD          HH +              CSGGVV+ASRDGKIV ENTLDARLDV F KKLPEIRK L  QVAA
Sbjct:  122 LVRLKEPGVLLRCRKEDLHLVESVLDSAKEEYASKVNVHPPEIIVDDVHLPPGPSHHHGFFHHHAEAHGPF---CSGGVVIASRDGKIVFENTLDARLDVAFNKKLPEIRKWLFGQVAA 237          
BLAST of CX287697 vs. ExPASy Swiss-Prot
Match: VATE3_ARATH (V-type proton ATPase subunit E3 OS=Arabidopsis thaliana GN=VHA-E3 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.532e-32
Identity = 70/109 (64.22%), Postives = 82/109 (75.23%), Query Frame = 3
Query:    3 LLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLXXXXXXXXXXXXSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 329
            LLRLKEPAVLLRCR++D  +VES+L+ A EEY +K +VH PEIIVD  I+L            SC+GGVV+ASRDGKIVCENTLDARL+V FR KLPEIRK L  +V A
Sbjct:  128 LLRLKEPAVLLRCREEDLDIVESMLDDASEEYCKKAKVHAPEIIVDKDIFLPPAPSDDDPHALSCAGGVVLASRDGKIVCENTLDARLEVAFRNKLPEIRKSLFGKVGA 236          
BLAST of CX287697 vs. ExPASy Swiss-Prot
Match: VATE_SPIOL (V-type proton ATPase subunit E OS=Spinacia oleracea GN=VATE PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.001e-32
Identity = 74/109 (67.89%), Postives = 83/109 (76.15%), Query Frame = 3
Query:    3 LLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLXXXXXXXXXXXXSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 329
            LLRL+EP VLLRCR+DD HLVE VL SAKEEYA+K +VH PEIIVD  I+L             CSGGVV+ASRDGKIV ENTLDARL+V FRKKLP+IRKQL +  AA
Sbjct:  122 LLRLREPGVLLRCREDDVHLVEHVLNSAKEEYAEKAEVHTPEIIVD-SIHLPAGPSHHKEHGLHCSGGVVLASRDGKIVFENTLDARLEVAFRKKLPQIRKQLFAVAAA 229          
BLAST of CX287697 vs. ExPASy Swiss-Prot
Match: VATE1_ARATH (V-type proton ATPase subunit E1 OS=Arabidopsis thaliana GN=VHA-E1 PE=1 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 5.823e-32
Identity = 71/109 (65.14%), Postives = 80/109 (73.39%), Query Frame = 3
Query:    3 LLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLXXXXXXXXXXXXSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 329
            LLRLKEP+VLLRCR++D  LVE+VL+ AKEEYA K +VH PE+ VD  I+L             CSGGVV+ASRDGKIVCENTLDARLDV FR KLP IRK L  QV A
Sbjct:  122 LLRLKEPSVLLRCREEDLGLVEAVLDDAKEEYAGKAKVHAPEVAVDTKIFLPPPPKSNDPHGLHCSGGVVLASRDGKIVCENTLDARLDVAFRMKLPVIRKSLFGQVTA 230          
BLAST of CX287697 vs. ExPASy Swiss-Prot
Match: VATE_MESCR (V-type proton ATPase subunit E OS=Mesembryanthemum crystallinum GN=VATE PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 7.870e-29
Identity = 68/103 (66.02%), Postives = 77/103 (74.76%), Query Frame = 3
Query:    3 LLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLXXXXXXXXXXXXSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQL 311
            LLRLKEPAVLLRCR++D H V  VL SA+EEY +K  V  PE+IVD  I+L            SCSGGVV+ASRDGKIV ENTLDARL+V FRKKLP+IRKQL
Sbjct:  122 LLRLKEPAVLLRCREEDKHHVHRVLHSAREEYGEKACVSHPEVIVDD-IHLPPAPTSYDSHELSCSGGVVMASRDGKIVFENTLDARLEVAFRKKLPQIRKQL 223          
BLAST of CX287697 vs. ExPASy Swiss-Prot
Match: VATE2_ARATH (V-type proton ATPase subunit E2 OS=Arabidopsis thaliana GN=VHA-E2 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.306e-27
Identity = 62/106 (58.49%), Postives = 78/106 (73.58%), Query Frame = 3
Query:    3 LLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLXXXXXXXXXXXXS--CSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLV 314
            LLRLKEP+VLLRCR+ D  +VESV+E AK +YA+K +V  P+I +D  ++L               CSGGVV+AS+DGKIVCENTLDARLDV FR+KLP+IR +LV
Sbjct:  122 LLRLKEPSVLLRCREMDKKVVESVIEDAKRQYAEKAKVGSPKITIDEKVFLPPPPNPKLPDSHDPHCSGGVVLASQDGKIVCENTLDARLDVAFRQKLPQIRTRLV 227          
BLAST of CX287697 vs. ExPASy Swiss-Prot
Match: VATE2_BOVIN (V-type proton ATPase subunit E 2 OS=Bos taurus GN=ATP6V1E2 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.742e-12
Identity = 41/103 (39.81%), Postives = 60/103 (58.25%), Query Frame = 3
Query:    3 LLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLXXXXXXXXXXXXSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQL 311
            LLRL EP V++RCR  DH LVE+ ++ A  +Y   +     E+ VD  + L              +GGV V S D +I+  NTL++RLD++ ++K+PEIRK L
Sbjct:  124 LLRLLEPVVIVRCRPQDHFLVEAAVQRAIPQYTA-VSHRCVEVQVDKEVQLAT----------DTTGGVEVYSSDQRIMVSNTLESRLDLLSQQKMPEIRKAL 215          
The following BLAST results are available for this feature:
BLAST of CX287697 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
VATE_CITUN5.796e-4888.99V-type proton ATPase subunit E OS=Citrus unshiu GN... [more]
VATE_CITLI5.796e-4888.99V-type proton ATPase subunit E OS=Citrus limon GN=... [more]
VATE_GOSHI4.032e-3365.55V-type proton ATPase subunit E OS=Gossypium hirsut... [more]
VATE3_ARATH1.532e-3264.22V-type proton ATPase subunit E3 OS=Arabidopsis tha... [more]
VATE_SPIOL2.001e-3267.89V-type proton ATPase subunit E OS=Spinacia olerace... [more]
VATE1_ARATH5.823e-3265.14V-type proton ATPase subunit E1 OS=Arabidopsis tha... [more]
VATE_MESCR7.870e-2966.02V-type proton ATPase subunit E OS=Mesembryanthemum... [more]
VATE2_ARATH3.306e-2758.49V-type proton ATPase subunit E2 OS=Arabidopsis tha... [more]
VATE2_BOVIN8.742e-1239.81V-type proton ATPase subunit E 2 OS=Bos taurus GN=... [more]
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Properties
Property NameValue
Genbank descriptionC01012D06SK Veg1 Citrus clementina cDNA clone C01012D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287697 ID=CX287697; Name=CX287697; organism=Citrus clementina; type=EST; length=398bp
GTTTGCTCAGGCTGAAAGAGCCAGCTGTGTTACTGAGATGCCGCAAAGAT
GACCATCATTTGGTGGAGTCTGTTTTGGAGTCAGCAAAAGAGGAATATGC
ACAGAAATTGCAGGTTCACCCACCAGAGATAATTGTGGATCATCACATCT
ATCTTCCGCCTGGCCCTGGCCATCATAATGCCCATGGTCCATCCTGCTCA
GGAGGTGTCGTGGTGGCTTCTCGAGATGGGAAGATAGTATGTGAGAATAC
CCTTGATGCACGGTTGGATGTTGTGTTCCGTAAAAAACTTCCTGAGATCC
GGAAGCAGCTCGTCAGTCAGGTTGCTGCATGATGAGTTAATTTGAATTGA
TTGTCACCCTCTGATTGTTCATGTCCGAAGTTTTTAAGTTTAGTTATT
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