CX287708

Overview
NameCX287708
Unique NameCX287708
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length404
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9765 contig Ccv1_Contig9765:578..980. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX287708 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 1.086e-41
Identity = 77/88 (87.50%), Postives = 85/88 (96.59%), Query Frame = -2 
Query:  140 FNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAGQGKTP 403
            F+P+SQSVEWATPWS+TAENFAN TGEQGYPGGKFFDPL LAGT+ +GVY+PDTEKL+RLKVAEIKHARLAM+AMLIFYFEAGQGKTP
Sbjct:  163 FDPDSQSVEWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKVAEIKHARLAMLAMLIFYFEAGQGKTP 250
[Close]
BLAST of CX287708 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 9.190e-41
Identity = 76/88 (86.36%), Postives = 85/88 (96.59%), Query Frame = -2 
Query:  140 FNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAGQGKTP 403
            F+P+SQSVEWATPWSRTAENF+N+TGEQGYPGGKFFDPL LAGTI +GVY PDT+KL+RLK+AEIKHARLAM+AMLIFYFEAGQGKTP
Sbjct:  168 FDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLAMLIFYFEAGQGKTP 255
[Close]
BLAST of CX287708 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 1.733e-39
Identity = 72/88 (81.82%), Postives = 84/88 (95.45%), Query Frame = -2 
Query:  140 FNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAGQGKTP 403
            F+ +SQS++WATPWS+TAENFAN TGEQGYPGGKFFDPL LAGT+ +GVY+PDTEKL+RLK+AEIKH+RLAM+AMLIFYFEAGQGKTP
Sbjct:  163 FDNDSQSIDWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKLAEIKHSRLAMLAMLIFYFEAGQGKTP 250
The following BLAST results are available for this feature:
BLAST of CX287708 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
CB4A_SOLLC1.086e-4187.50Chlorophyll a-b binding protein CP24 10A, chloropl... [more]
CB4_SPIOL9.190e-4186.36Chlorophyll a-b binding protein CP24, chloroplasti... [more]
CB4B_SOLLC1.733e-3981.82Chlorophyll a-b binding protein CP24 10B, chloropl... [more]
back to top
Properties
Property NameValue
Genbank descriptionC01012E05SK Veg1 Citrus clementina cDNA clone C01012E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287708 ID=CX287708; Name=CX287708; organism=Citrus clementina; type=EST; length=404bp
AATTCGGCACGAGGGAGAACTAGTCTCGAGTTTTTTTTTTTTTTTTTTGA
GGGAACTCATATACATCCGATTGATTACGCTTTAACACCAATCAGTGAGT
TATCTACATAAGCATGTTTTACAAACCAAGAGCCCCAAGTGGCGTCTTGC
CTTGGCCAGCTTCAAAGTAGAAAATCAACATGGCCACCATAGCAAGCCTA
GCATGTTTAATCTCAGCAACTTTGAGCCTGTCAAGCTTCTCAGTGTCAGG
AATGTAGACACCATCCTTAATTGTTCCAGCCAAACATAAGGGATCAAAAA
ACTTTCCACCAGGGTAGCCTTGTTCACCAGTCGCATTGGCAAAGTTTTCA
GCAGTTCTTGACCAAGGTGTTGCCCATTCAACTGATTGAGATTCAGGATT
GAAA
back to top