CX287714

Overview
NameCX287714
Unique NameCX287714
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length387
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13152 contig Ccv1_Contig13152:112..498. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287714 vs. ExPASy Swiss-Prot
Match: GGR_ARATH (Geranylgeranyl pyrophosphate synthase-related protein, chloroplastic OS=Arabidopsis thaliana GN=GGR PE=2 SV=2)

HSP 1 Score: 189.119 bits (479), Expect = 5.887e-48
Identity = 92/128 (71.88%), Postives = 107/128 (83.59%), Query Frame = 2
Query:    8 PRKFPVRCSSLPV--SAASQLRSTQFDLKTYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTV 385
            P   P++ S   +  S++S   S  FDL+TYWTTLITEI+Q L++AI VK+P  IYE+MRYSVLA+G KRAPPVMCVAACELFG +R+AAFPTACALEMVHAASLIHDDLPCMDDDP RRG+PSNHTV
Sbjct:   20 PHTLPMKLSPAAIRSSSSSAPGSLNFDLRTYWTTLITEINQKLDEAIPVKHPAGIYEAMRYSVLAQGAKRAPPVMCVAACELFGGDRLAAFPTACALEMVHAASLIHDDLPCMDDDPVRRGKPSNHTV 147          
BLAST of CX287714 vs. ExPASy Swiss-Prot
Match: GGPPS_CATRO (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Catharanthus roseus GN=GGPS1 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.154e-27
Identity = 57/106 (53.77%), Postives = 76/106 (71.70%), Query Frame = 2
Query:   68 STQFDLKTYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTV 385
            S+ FD K Y       +++ LE A+ V+ P +I+ESMRYS+LA G KR  P++C+AACELFG     A P+ACA+EM+H  SL+HDDLPCMD+D  RRG+P+NH V
Sbjct:   61 SSSFDFKAYMIGKANSVNKALEDAVLVREPLKIHESMRYSLLAGG-KRVRPMLCIAACELFGGTESVAMPSACAVEMIHTMSLMHDDLPCMDNDDLRRGKPTNHKV 165          
BLAST of CX287714 vs. ExPASy Swiss-Prot
Match: GGPPS_HEVBR (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Hevea brasiliensis GN=GGPS PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.386e-27
Identity = 65/137 (47.45%), Postives = 84/137 (61.31%), Query Frame = 2
Query:   17 FPVRCSSLPVSAASQLRSTQ--------------FDLKTYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTV 385
            F  R S  P+S+ S + + +              FD K+Y       I+Q LE AI ++ P +I+ESMRYS+LA G KR  P +C+AACEL G N   A P ACA+EM+H  SLIHDDLPCMD+D  RRG+P+NH V
Sbjct:   43 FAYRKSERPISSVSAIITKEEETLQEEQNNPPPSFDFKSYMLQKGNSINQALEAAIPLQEPAKIHESMRYSLLAGG-KRVRPALCLAACELVGGNDSMAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHIV 178          
BLAST of CX287714 vs. ExPASy Swiss-Prot
Match: GGPP1_ARATH (Geranylgeranyl pyrophosphate synthetase 1, chloroplastic OS=Arabidopsis thaliana GN=GGPS1 PE=2 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 4.850e-26
Identity = 59/121 (48.76%), Postives = 81/121 (66.94%), Query Frame = 2
Query:   32 SSLPVSAASQLRSTQ---FDLKTYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTV 385
            SS  V+    LR ++   FD  +Y  T    +++ L+ A+ ++ P +I+E+MRYS+LA G KR  PV+C+AACEL G     A P ACA+EM+H  SLIHDDLPCMD+D  RRG+P+NH V
Sbjct:   56 SSSVVTKEDNLRQSEPSSFDFMSYIITKAELVNKALDSAVPLREPLKIHEAMRYSLLAGG-KRVRPVLCIAACELVGGEESTAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKV 175          
BLAST of CX287714 vs. ExPASy Swiss-Prot
Match: GGPPS_CAPAN (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Capsicum annuum GN=GGPS1 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.843e-25
Identity = 55/103 (53.40%), Postives = 74/103 (71.84%), Query Frame = 2
Query:   77 FDLKTYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTV 385
            F+ K Y T     +++ L++AI VK P  I+E+MRYS+LA G KR  P++C+AACEL G N+  A   ACA+EM+H  SLIHDDLPCMD+D  RRG+P+NH +
Sbjct:   76 FNFKIYVTEKAISVNKALDEAIIVKEPHVIHEAMRYSLLAGG-KRVRPMLCLAACELVGGNQENAMAAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKI 177          
BLAST of CX287714 vs. ExPASy Swiss-Prot
Match: GGPPS_SINAL (Geranylgeranyl pyrophosphate synthetase, chloroplastic/chromoplastic OS=Sinapis alba GN=GGPS1 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.362e-25
Identity = 53/106 (50.00%), Postives = 73/106 (68.87%), Query Frame = 2
Query:   68 STQFDLKTYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTV 385
            S+ FD  +Y       +++ L+ A+ ++ P +I+E+MRYS+LA G KR  PV+C+AACEL G     A P  CA+EM+H  SLIHDDLPCMD+D  RRG+P+NH V
Sbjct:   67 SSSFDFMSYIIRKADSVNKALDSAVPLREPLKIHEAMRYSLLAGG-KRVRPVLCIAACELVGGEESLAMPARCAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKV 171          
BLAST of CX287714 vs. ExPASy Swiss-Prot
Match: GGPP2_ARATH (Geranylgeranyl pyrophosphate synthetase 2 OS=Arabidopsis thaliana GN=GGPP2 PE=2 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 2.942e-23
Identity = 51/103 (49.51%), Postives = 71/103 (68.93%), Query Frame = 2
Query:   77 FDLKTYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTV 385
            F+   Y  +    +++ LE+AI V  P +I+E+MRY++LA G KR  P++C+A+CEL G    AA P ACA+EM+H  SLI DDLPCMD+D  RRG+P+ H V
Sbjct:   83 FEFDPYMMSKAESVNKALEEAIPVGEPLKIHEAMRYAILAAG-KRVRPILCLASCELVGGQENAAMPAACAVEMIHTMSLIKDDLPCMDNDDLRRGKPTTHKV 184          
BLAST of CX287714 vs. ExPASy Swiss-Prot
Match: CRTE_CYAPA (Geranylgeranyl pyrophosphate synthetase homolog OS=Cyanophora paradoxa GN=crtE PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.460e-22
Identity = 53/105 (50.48%), Postives = 69/105 (65.71%), Query Frame = 2
Query:   71 TQFDLKTYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTV 385
            T F+L TY       ++  L K+I    P  IY+S+RYS L+ G KR  P++C+A+CEL G     A PTACALEM+H  SLIHDDLP MD+D  RRG+P+NH +
Sbjct:    6 TNFNLLTYLYERKEIVEDTLNKSIPRGNPTFIYDSIRYS-LSAGGKRIRPILCLASCELAGGTMEMALPTACALEMIHTMSLIHDDLPAMDNDSYRRGKPTNHII 109          
BLAST of CX287714 vs. ExPASy Swiss-Prot
Match: GGPP3_ARATH (Geranylgeranyl pyrophosphate synthetase 3, chloroplastic OS=Arabidopsis thaliana GN=GGPP3 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.247e-22
Identity = 48/116 (41.38%), Postives = 72/116 (62.07%), Query Frame = 2
Query:   38 LPVSAASQLRSTQFDLKTYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTV 385
            +P        ++ FD K Y       ++  L+ ++ ++ P  + E++RYS+LA G KR  P++C+A CEL G +   A   ACA+EM+H +SLIHDDLPCMD+   RRG+P+NH V
Sbjct:   51 IPPEGKCNDHNSAFDFKLYMIRKAESVNAALDVSVPLREPLTVQEAVRYSLLAGG-KRVRPLLCIAVCELVGGDEATAMSAACAVEMIHTSSLIHDDLPCMDNADLRRGKPTNHKV 165          
BLAST of CX287714 vs. ExPASy Swiss-Prot
Match: GGPP4_ARATH (Geranylgeranyl pyrophosphate synthetase 4 OS=Arabidopsis thaliana GN=GGPP4 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.465e-22
Identity = 50/103 (48.54%), Postives = 69/103 (66.99%), Query Frame = 2
Query:   77 FDLKTYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTV 385
            FD K Y  +    I++ L++AI +  P  I+++MRY++LA G KR  P++C+AACEL G     A   ACA+EM+H  SLI DDLPCMD+D  RRG+P+ H V
Sbjct:   79 FDFKPYMISKAETINRALDEAIPLIEPLNIHKAMRYAILAGG-KRVRPILCLAACELVGGEERLAIQAACAVEMIHTMSLIKDDLPCMDNDDLRRGKPTTHKV 180          
The following BLAST results are available for this feature:
BLAST of CX287714 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
GGR_ARATH5.887e-4871.88Geranylgeranyl pyrophosphate synthase-related prot... [more]
GGPPS_CATRO1.154e-2753.77Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPPS_HEVBR4.386e-2747.45Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPP1_ARATH4.850e-2648.76Geranylgeranyl pyrophosphate synthetase 1, chlorop... [more]
GGPPS_CAPAN1.843e-2553.40Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPPS_SINAL5.362e-2550.00Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPP2_ARATH2.942e-2349.51Geranylgeranyl pyrophosphate synthetase 2 OS=Arabi... [more]
CRTE_CYAPA1.460e-2250.48Geranylgeranyl pyrophosphate synthetase homolog OS... [more]
GGPP3_ARATH7.247e-2241.38Geranylgeranyl pyrophosphate synthetase 3, chlorop... [more]
GGPP4_ARATH9.465e-2248.54Geranylgeranyl pyrophosphate synthetase 4 OS=Arabi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01012E11SK Veg1 Citrus clementina cDNA clone C01012E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287714 ID=CX287714; Name=CX287714; organism=Citrus clementina; type=EST; length=387bp
TTGCCTTCCAAGAAAATTCCCCGTTCGTTGTTCGTCTTTACCAGTCTCTG
CTGCAAGCCAGTTGAGATCCACCCAGTTTGATTTGAAGACTTACTGGACT
ACCCTTATTACTGAAATTGATCAGAATTTGGAAAAAGCAATCACAGTTAA
GTACCCAGAGCAGATCTATGAATCCATGAGATATTCGGTGTTAGCCAAGG
GAACTAAGCGGGCGCCGCCTGTCATGTGTGTGGCAGCTTGCGAGCTCTTT
GGTGTTAATCGGATTGCAGCTTTTCCCACAGCTTGCGCTCTTGAAATGGT
CCATGCTGCTTCATTGATTCATGACGATCTTCCTTGCATGGATGATGACC
CATCTCGCCGAGGTCAGCCCTCAAACCACACAGTCTA
back to top