CX287714
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX287714 vs. ExPASy Swiss-Prot
Match: GGR_ARATH (Geranylgeranyl pyrophosphate synthase-related protein, chloroplastic OS=Arabidopsis thaliana GN=GGR PE=2 SV=2) HSP 1 Score: 189.119 bits (479), Expect = 5.887e-48 Identity = 92/128 (71.88%), Postives = 107/128 (83.59%), Query Frame = 2 Query: 8 PRKFPVRCSSLPV--SAASQLRSTQFDLKTYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTV 385 P P++ S + S++S S FDL+TYWTTLITEI+Q L++AI VK+P IYE+MRYSVLA+G KRAPPVMCVAACELFG +R+AAFPTACALEMVHAASLIHDDLPCMDDDP RRG+PSNHTV Sbjct: 20 PHTLPMKLSPAAIRSSSSSAPGSLNFDLRTYWTTLITEINQKLDEAIPVKHPAGIYEAMRYSVLAQGAKRAPPVMCVAACELFGGDRLAAFPTACALEMVHAASLIHDDLPCMDDDPVRRGKPSNHTV 147
BLAST of CX287714 vs. ExPASy Swiss-Prot
Match: GGPPS_CATRO (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Catharanthus roseus GN=GGPS1 PE=3 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 1.154e-27 Identity = 57/106 (53.77%), Postives = 76/106 (71.70%), Query Frame = 2 Query: 68 STQFDLKTYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTV 385 S+ FD K Y +++ LE A+ V+ P +I+ESMRYS+LA G KR P++C+AACELFG A P+ACA+EM+H SL+HDDLPCMD+D RRG+P+NH V Sbjct: 61 SSSFDFKAYMIGKANSVNKALEDAVLVREPLKIHESMRYSLLAGG-KRVRPMLCIAACELFGGTESVAMPSACAVEMIHTMSLMHDDLPCMDNDDLRRGKPTNHKV 165
BLAST of CX287714 vs. ExPASy Swiss-Prot
Match: GGPPS_HEVBR (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Hevea brasiliensis GN=GGPS PE=1 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 4.386e-27 Identity = 65/137 (47.45%), Postives = 84/137 (61.31%), Query Frame = 2 Query: 17 FPVRCSSLPVSAASQLRSTQ--------------FDLKTYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTV 385 F R S P+S+ S + + + FD K+Y I+Q LE AI ++ P +I+ESMRYS+LA G KR P +C+AACEL G N A P ACA+EM+H SLIHDDLPCMD+D RRG+P+NH V Sbjct: 43 FAYRKSERPISSVSAIITKEEETLQEEQNNPPPSFDFKSYMLQKGNSINQALEAAIPLQEPAKIHESMRYSLLAGG-KRVRPALCLAACELVGGNDSMAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHIV 178
BLAST of CX287714 vs. ExPASy Swiss-Prot
Match: GGPP1_ARATH (Geranylgeranyl pyrophosphate synthetase 1, chloroplastic OS=Arabidopsis thaliana GN=GGPS1 PE=2 SV=2) HSP 1 Score: 116.316 bits (290), Expect = 4.850e-26 Identity = 59/121 (48.76%), Postives = 81/121 (66.94%), Query Frame = 2 Query: 32 SSLPVSAASQLRSTQ---FDLKTYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTV 385 SS V+ LR ++ FD +Y T +++ L+ A+ ++ P +I+E+MRYS+LA G KR PV+C+AACEL G A P ACA+EM+H SLIHDDLPCMD+D RRG+P+NH V Sbjct: 56 SSSVVTKEDNLRQSEPSSFDFMSYIITKAELVNKALDSAVPLREPLKIHEAMRYSLLAGG-KRVRPVLCIAACELVGGEESTAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKV 175
BLAST of CX287714 vs. ExPASy Swiss-Prot
Match: GGPPS_CAPAN (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Capsicum annuum GN=GGPS1 PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 1.843e-25 Identity = 55/103 (53.40%), Postives = 74/103 (71.84%), Query Frame = 2 Query: 77 FDLKTYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTV 385 F+ K Y T +++ L++AI VK P I+E+MRYS+LA G KR P++C+AACEL G N+ A ACA+EM+H SLIHDDLPCMD+D RRG+P+NH + Sbjct: 76 FNFKIYVTEKAISVNKALDEAIIVKEPHVIHEAMRYSLLAGG-KRVRPMLCLAACELVGGNQENAMAAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKI 177
BLAST of CX287714 vs. ExPASy Swiss-Prot
Match: GGPPS_SINAL (Geranylgeranyl pyrophosphate synthetase, chloroplastic/chromoplastic OS=Sinapis alba GN=GGPS1 PE=1 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 5.362e-25 Identity = 53/106 (50.00%), Postives = 73/106 (68.87%), Query Frame = 2 Query: 68 STQFDLKTYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTV 385 S+ FD +Y +++ L+ A+ ++ P +I+E+MRYS+LA G KR PV+C+AACEL G A P CA+EM+H SLIHDDLPCMD+D RRG+P+NH V Sbjct: 67 SSSFDFMSYIIRKADSVNKALDSAVPLREPLKIHEAMRYSLLAGG-KRVRPVLCIAACELVGGEESLAMPARCAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKV 171
BLAST of CX287714 vs. ExPASy Swiss-Prot
Match: GGPP2_ARATH (Geranylgeranyl pyrophosphate synthetase 2 OS=Arabidopsis thaliana GN=GGPP2 PE=2 SV=2) HSP 1 Score: 107.071 bits (266), Expect = 2.942e-23 Identity = 51/103 (49.51%), Postives = 71/103 (68.93%), Query Frame = 2 Query: 77 FDLKTYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTV 385 F+ Y + +++ LE+AI V P +I+E+MRY++LA G KR P++C+A+CEL G AA P ACA+EM+H SLI DDLPCMD+D RRG+P+ H V Sbjct: 83 FEFDPYMMSKAESVNKALEEAIPVGEPLKIHEAMRYAILAAG-KRVRPILCLASCELVGGQENAAMPAACAVEMIHTMSLIKDDLPCMDNDDLRRGKPTTHKV 184
BLAST of CX287714 vs. ExPASy Swiss-Prot
Match: CRTE_CYAPA (Geranylgeranyl pyrophosphate synthetase homolog OS=Cyanophora paradoxa GN=crtE PE=3 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 1.460e-22 Identity = 53/105 (50.48%), Postives = 69/105 (65.71%), Query Frame = 2 Query: 71 TQFDLKTYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTV 385 T F+L TY ++ L K+I P IY+S+RYS L+ G KR P++C+A+CEL G A PTACALEM+H SLIHDDLP MD+D RRG+P+NH + Sbjct: 6 TNFNLLTYLYERKEIVEDTLNKSIPRGNPTFIYDSIRYS-LSAGGKRIRPILCLASCELAGGTMEMALPTACALEMIHTMSLIHDDLPAMDNDSYRRGKPTNHII 109
BLAST of CX287714 vs. ExPASy Swiss-Prot
Match: GGPP3_ARATH (Geranylgeranyl pyrophosphate synthetase 3, chloroplastic OS=Arabidopsis thaliana GN=GGPP3 PE=2 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 7.247e-22 Identity = 48/116 (41.38%), Postives = 72/116 (62.07%), Query Frame = 2 Query: 38 LPVSAASQLRSTQFDLKTYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTV 385 +P ++ FD K Y ++ L+ ++ ++ P + E++RYS+LA G KR P++C+A CEL G + A ACA+EM+H +SLIHDDLPCMD+ RRG+P+NH V Sbjct: 51 IPPEGKCNDHNSAFDFKLYMIRKAESVNAALDVSVPLREPLTVQEAVRYSLLAGG-KRVRPLLCIAVCELVGGDEATAMSAACAVEMIHTSSLIHDDLPCMDNADLRRGKPTNHKV 165
BLAST of CX287714 vs. ExPASy Swiss-Prot
Match: GGPP4_ARATH (Geranylgeranyl pyrophosphate synthetase 4 OS=Arabidopsis thaliana GN=GGPP4 PE=2 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 9.465e-22 Identity = 50/103 (48.54%), Postives = 69/103 (66.99%), Query Frame = 2 Query: 77 FDLKTYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTV 385 FD K Y + I++ L++AI + P I+++MRY++LA G KR P++C+AACEL G A ACA+EM+H SLI DDLPCMD+D RRG+P+ H V Sbjct: 79 FDFKPYMISKAETINRALDEAIPLIEPLNIHKAMRYAILAGG-KRVRPILCLAACELVGGEERLAIQAACAVEMIHTMSLIKDDLPCMDNDDLRRGKPTTHKV 180 The following BLAST results are available for this feature:
BLAST of CX287714 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 15
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Sequences
The
following sequences are available for this feature:
EST sequence >CX287714 ID=CX287714; Name=CX287714; organism=Citrus clementina; type=EST; length=387bpback to top |