CX287745

Overview
NameCX287745
Unique NameCX287745
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length429
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10606 contig Ccv1_Contig10606:675..1104. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287745 vs. ExPASy Swiss-Prot
Match: C3H48_ARATH (Zinc finger CCCH domain-containing protein 48 OS=Arabidopsis thaliana GN=ZFWD1 PE=2 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 7.723e-59
Identity = 97/132 (73.48%), Postives = 114/132 (86.36%), Query Frame = 2
Query:   32 LCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFA 427
            LC+ WV GNC YG+KC++LH W+ GD F LLTQL+GHQKVV+GI LPSGSDKLY+ SKDETVR+WDCASGQC GV+NLGGEVGC+ISEGPW+ +G+ N VKAWN Q N DLSL+GPVGQVY++ VG DLLFA
Sbjct:  107 LCKFWVDGNCPYGDKCRYLHCWSKGDSFSLLTQLDGHQKVVTGIALPSGSDKLYTASKDETVRIWDCASGQCTGVLNLGGEVGCIISEGPWLLVGMPNLVKAWNIQNNADLSLNGPVGQVYSLVVGTDLLFA 238          
BLAST of CX287745 vs. ExPASy Swiss-Prot
Match: C3H63_ARATH (Zinc finger CCCH domain-containing protein 63 OS=Arabidopsis thaliana GN=ZFWD2 PE=2 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 9.441e-57
Identity = 92/132 (69.70%), Postives = 113/132 (85.61%), Query Frame = 2
Query:   32 LCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFA 427
            +C  WV GNC YG+KC++LH W+ G+ F LLTQL+GH+K+VSGI LPSGSDKLY+GSKDET+RVWDCASGQC GV+ LGGE+GC++SEGPW+ +G+ N VKAWN +TN D SLSGPVGQVY++ VG DLLFA
Sbjct:  114 VCNFWVDGNCTYGDKCRYLHCWSKGESFALLTQLDGHEKLVSGIALPSGSDKLYTGSKDETLRVWDCASGQCTGVLKLGGEIGCVLSEGPWLLVGMPNLVKAWNIETNADQSLSGPVGQVYSLVVGTDLLFA 245          
BLAST of CX287745 vs. ExPASy Swiss-Prot
Match: C3H17_ORYSJ (Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica GN=Os02g0677700 PE=2 SV=2)

HSP 1 Score: 200.29 bits (508), Expect = 2.660e-51
Identity = 87/139 (62.59%), Postives = 115/139 (82.73%), Query Frame = 2
Query:   14 RHEA-DILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFA 427
            RH+  D  CR ++ G+C YGEKC++ HS+++ D   +LT L+GH+KVV+GI LP+GSDKLYSGSKD TVR+WDC +GQCAGVIN+G E+GCMISEGPW+F+G+ + VK WN QT  +++L+GP GQVYA+AVGN+LLFA
Sbjct:  106 RHKVPDRPCRYFLAGDCSYGEKCRYPHSYSMSDSITMLTPLQGHEKVVTGIALPAGSDKLYSGSKDGTVRMWDCQTGQCAGVINMGREIGCMISEGPWLFVGIPDAVKVWNMQTQAEMNLTGPTGQVYALAVGNELLFA 244          
BLAST of CX287745 vs. ExPASy Swiss-Prot
Match: C3H59_ARATH (Zinc finger CCCH domain-containing protein 59 OS=Arabidopsis thaliana GN=ZFWD3 PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 1.159e-38
Identity = 71/132 (53.79%), Postives = 90/132 (68.18%), Query Frame = 2
Query:   32 LCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFA 427
            +C  W  GNC  GEKC+FLHSW+   G  ++  LEGH+  + GI LP GSDKL+S S D T+ +WDC SGQC   INL  E G +ISEGPW+F+G+ N VKA+N Q + D+ L G VGQV+AM   N +LFA
Sbjct:  150 VCNFWKDGNCKKGEKCQFLHSWSCFPGLAMVAALEGHKNDIKGIALPQGSDKLFSVSGDGTLLIWDCNSGQCVRSINLQAEAGSLISEGPWVFLGLPNAVKAFNVQNSKDVHLEGVVGQVHAMTAANGMLFA 281          
BLAST of CX287745 vs. ExPASy Swiss-Prot
Match: C3H62_ARATH (Zinc finger CCCH domain-containing protein 62 OS=Arabidopsis thaliana GN=ZFWD4 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.514e-38
Identity = 73/134 (54.48%), Postives = 93/134 (69.40%), Query Frame = 2
Query:   32 LCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSL--SGPVGQVYAMAVGNDLLFA 427
            +C+ W  G C  GE+C+FLHSW+   G  ++  LEGH K + GI LP GSDKL+S S D T+RVWDC SGQC   INL  E G +ISEGPW+F+G+ N +KA+N QT+ DL L  +G VGQV AM + N +LFA
Sbjct:   94 VCKYWKDGKCKRGEQCQFLHSWSCFPGLAMVASLEGHNKELKGIALPEGSDKLFSVSIDGTLRVWDCNSGQCVHSINLDAEAGSLISEGPWVFLGLPNAIKAFNVQTSQDLHLQAAGVVGQVNAMTIANGMLFA 227          
The following BLAST results are available for this feature:
BLAST of CX287745 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
C3H48_ARATH7.723e-5973.48Zinc finger CCCH domain-containing protein 48 OS=A... [more]
C3H63_ARATH9.441e-5769.70Zinc finger CCCH domain-containing protein 63 OS=A... [more]
C3H17_ORYSJ2.660e-5162.59Zinc finger CCCH domain-containing protein 17 OS=O... [more]
C3H59_ARATH1.159e-3853.79Zinc finger CCCH domain-containing protein 59 OS=A... [more]
C3H62_ARATH1.514e-3854.48Zinc finger CCCH domain-containing protein 62 OS=A... [more]
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Properties
Property NameValue
Genbank descriptionC01012H06SK Veg1 Citrus clementina cDNA clone C01012H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287745 ID=CX287745; Name=CX287745; organism=Citrus clementina; type=EST; length=429bp
CTCGTGCCGAATTCGGCACGAGGCGGATATATTGTGTAGAAATTGGGTTC
AAGGGAATTGTATGTATGGAGAGAAGTGCAAGTTTTTGCATTCTTGGACT
GTAGGCGATGGTTTCAAGTTGTTGACTCAGCTTGAAGGGCACCAAAAGGT
TGTGAGTGGGATTACTCTGCCATCGGGTTCAGATAAGCTTTATTCTGGTA
GTAAAGACGAGACTGTTAGAGTTTGGGATTGTGCTTCTGGACAGTGTGCA
GGTGTGATTAATCTTGGTGGTGAAGTTGGTTGCATGATTAGTGAAGGTCC
TTGGATTTTCATTGGTGTAACAAATTTTGTCAAGGCTTGGAACACCCAAA
CTAATACTGACCTGAGTCTTAGTGGACCTGTGGGACAAGTTTACGCAATG
GCTGTCGGTAATGATTTACTCTTCGCTGG
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