CX287748

Overview
NameCX287748
Unique NameCX287748
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length401
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11254 contig Ccv1_Contig11254:731..1104. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287748 vs. ExPASy Swiss-Prot
Match: CH10C_ARATH (20 kDa chaperonin, chloroplastic OS=Arabidopsis thaliana GN=CPN21 PE=1 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 1.688e-31
Identity = 66/83 (79.52%), Postives = 74/83 (89.16%), Query Frame = -3
Query:  151 VAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 399
            VAEAEE TAGGLLLTE +KEKPSIGTVIAVGPG LDEEG   PL ++ G+TV+YSKYAGNDFKG DG+NYIALRAS+VMA+LS
Sbjct:  171 VAEAEEKTAGGLLLTETTKEKPSIGTVIAVGPGSLDEEGKITPLPVSTGSTVLYSKYAGNDFKGKDGSNYIALRASDVMAILS 253          
BLAST of CX287748 vs. ExPASy Swiss-Prot
Match: CH10C_SPIOL (20 kDa chaperonin, chloroplastic OS=Spinacia oleracea GN=CPN21 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.024e-28
Identity = 60/83 (72.29%), Postives = 69/83 (83.13%), Query Frame = -3
Query:  151 VAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 399
            VAE E  T+GGLLL E+SKEKPS GTV+A GPG LDEEGNR PL +  GNTV+YSKYAGNDFKG DG++Y+ LR S+VMAVLS
Sbjct:  173 VAEVENKTSGGLLLAESSKEKPSFGTVVATGPGVLDEEGNRIPLPVCSGNTVLYSKYAGNDFKGVDGSDYMVLRVSDVMAVLS 255          
BLAST of CX287748 vs. ExPASy Swiss-Prot
Match: CH10_CLAM3 (10 kDa chaperonin OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) GN=groS PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.883e-17
Identity = 41/80 (51.25%), Postives = 58/80 (72.50%), Query Frame = -3
Query:  154 EAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 393
            EAE+TTA GL++ + +KEKP  G V+AVGPG +D+ GNR PL +A G+ V+YSKY G + K  DG + + L A +V+AV+
Sbjct:   18 EAEQTTASGLVIPDTAKEKPQEGEVVAVGPGRIDDNGNRVPLDVAVGDKVIYSKYGGTEVK-YDGQDLLVLSARDVLAVI 96          
BLAST of CX287748 vs. ExPASy Swiss-Prot
Match: CH10_MYCTU (10 kDa chaperonin OS=Mycobacterium tuberculosis GN=groS PE=1 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 8.990e-17
Identity = 43/82 (52.44%), Postives = 60/82 (73.17%), Query Frame = -3
Query:  151 EAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRK-PLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 393
            EAE TTA GL++ + +KEKP  GTV+AVGPG  DE+G ++ PL +A G+TV+YSKY G + K  +G  Y+ L A +V+AV+S
Sbjct:   19 EAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSKYGGTEIK-YNGEEYLILSARDVLAVVS 99          
BLAST of CX287748 vs. ExPASy Swiss-Prot
Match: CH10_MYCTA (10 kDa chaperonin OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=groS PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 8.990e-17
Identity = 43/82 (52.44%), Postives = 60/82 (73.17%), Query Frame = -3
Query:  151 EAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRK-PLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 393
            EAE TTA GL++ + +KEKP  GTV+AVGPG  DE+G ++ PL +A G+TV+YSKY G + K  +G  Y+ L A +V+AV+S
Sbjct:   19 EAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSKYGGTEIK-YNGEEYLILSARDVLAVVS 99          
BLAST of CX287748 vs. ExPASy Swiss-Prot
Match: CH10_MYCS2 (10 kDa chaperonin OS=Mycobacterium smegmatis GN=groS PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 8.990e-17
Identity = 43/82 (52.44%), Postives = 60/82 (73.17%), Query Frame = -3
Query:  151 EAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRK-PLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 393
            EAE TTA GL++ + +KEKP  GTV+AVGPG  DE+G ++ PL +A G+TV+YSKY G + K  +G  Y+ L A +V+AV+S
Sbjct:   19 EAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSKYGGTEIK-YNGEEYLILSARDVLAVVS 99          
BLAST of CX287748 vs. ExPASy Swiss-Prot
Match: CH10_MYCBT (10 kDa chaperonin OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=groS PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 8.990e-17
Identity = 43/82 (52.44%), Postives = 60/82 (73.17%), Query Frame = -3
Query:  151 EAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRK-PLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 393
            EAE TTA GL++ + +KEKP  GTV+AVGPG  DE+G ++ PL +A G+TV+YSKY G + K  +G  Y+ L A +V+AV+S
Sbjct:   19 EAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSKYGGTEIK-YNGEEYLILSARDVLAVVS 99          
BLAST of CX287748 vs. ExPASy Swiss-Prot
Match: CH10_MYCBP (10 kDa chaperonin OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=groS PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 8.990e-17
Identity = 43/82 (52.44%), Postives = 60/82 (73.17%), Query Frame = -3
Query:  151 EAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRK-PLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 393
            EAE TTA GL++ + +KEKP  GTV+AVGPG  DE+G ++ PL +A G+TV+YSKY G + K  +G  Y+ L A +V+AV+S
Sbjct:   19 EAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSKYGGTEIK-YNGEEYLILSARDVLAVVS 99          
BLAST of CX287748 vs. ExPASy Swiss-Prot
Match: CH10_MYCBO (10 kDa chaperonin OS=Mycobacterium bovis GN=groS PE=1 SV=4)

HSP 1 Score: 85.5001 bits (210), Expect = 8.990e-17
Identity = 43/82 (52.44%), Postives = 60/82 (73.17%), Query Frame = -3
Query:  151 EAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRK-PLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 393
            EAE TTA GL++ + +KEKP  GTV+AVGPG  DE+G ++ PL +A G+TV+YSKY G + K  +G  Y+ L A +V+AV+S
Sbjct:   19 EAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSKYGGTEIK-YNGEEYLILSARDVLAVVS 99          
BLAST of CX287748 vs. ExPASy Swiss-Prot
Match: CH10_THEVL (10 kDa chaperonin OS=Thermosynechococcus vulcanus GN=groS PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 1.174e-16
Identity = 39/82 (47.56%), Postives = 60/82 (73.17%), Query Frame = -3
Query:  154 VAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 399
            VAE+EE TAGG+LL + ++EKP +G V AVGPG L E+G R+P+ +  G+ V+YSKYAG + K + G +Y+ L   +++A++
Sbjct:   22 VAESEERTAGGILLPDNAREKPQVGEVTAVGPGKLTEDGKRQPMDVKVGDKVLYSKYAGTEVKLA-GEDYVLLSEKDILAIV 102          
The following BLAST results are available for this feature:
BLAST of CX287748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 257
Match NameE-valueIdentityDescription
CH10C_ARATH1.688e-3179.5220 kDa chaperonin, chloroplastic OS=Arabidopsis th... [more]
CH10C_SPIOL1.024e-2872.2920 kDa chaperonin, chloroplastic OS=Spinacia olera... [more]
CH10_CLAM36.883e-1751.2510 kDa chaperonin OS=Clavibacter michiganensis sub... [more]
CH10_MYCTU8.990e-1752.4410 kDa chaperonin OS=Mycobacterium tuberculosis GN... [more]
CH10_MYCTA8.990e-1752.4410 kDa chaperonin OS=Mycobacterium tuberculosis (s... [more]
CH10_MYCS28.990e-1752.4410 kDa chaperonin OS=Mycobacterium smegmatis GN=gr... [more]
CH10_MYCBT8.990e-1752.4410 kDa chaperonin OS=Mycobacterium bovis (strain B... [more]
CH10_MYCBP8.990e-1752.4410 kDa chaperonin OS=Mycobacterium bovis (strain B... [more]
CH10_MYCBO8.990e-1752.4410 kDa chaperonin OS=Mycobacterium bovis GN=groS P... [more]
CH10_THEVL1.174e-1647.5610 kDa chaperonin OS=Thermosynechococcus vulcanus ... [more]

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Properties
Property NameValue
Genbank descriptionC01012H09SK Veg1 Citrus clementina cDNA clone C01012H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287748 ID=CX287748; Name=CX287748; organism=Citrus clementina; type=EST; length=401bp
AAAAACAAGCAGCAATTCGATTGATCAAGCTGCAATTCTTTATGTTCAAA
TAAGAGGACAGTCAAAATCCGTATGCCTTGAGGCAACTCAACCATAAAAT
TCAATTCACTAATACATATAAAGCCTCGCTCAAGTAAACACAGACAACTA
AGAGAGCACAGCCATCACTTCAGAAGCTCTTAAAGCAATGTAGTTGGTAC
CATCACTGCCCTTGAAGTCATTCCCTGCATACTTCGAATACATCACCGTG
TTCCCTGGTGCAATGGATAGAGGTTTCCTATTACCTTCCTCATCTAGAGG
ACCGGGTCCAACAGCAATGACCGTTCCAATGGAAGGTTTCTCCTTGCTTG
CCTCCGTCAACAACAAACCTCCAGCAGTTGTCTCCTCAGCCTCAGCAACC
T
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