CX287753

Overview
NameCX287753
Unique NameCX287753
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length387
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10999 contig Ccv1_Contig10999:825..1211. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX287753 vs. ExPASy Swiss-Prot
Match: RRFC_SPIOL (Ribosome-recycling factor, chloroplastic OS=Spinacia oleracea GN=RRF PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.258e-15
Identity = 38/43 (88.37%), Postives = 43/43 (100.00%), Query Frame = -2 
Query:  258 ALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 386
            ALK+YEKL+KEKKLSEDNVKDLS+DLQKLTDEYMKK++SIYKQ
Sbjct:  221 ALKSYEKLEKEKKLSEDNVKDLSADLQKLTDEYMKKVESIYKQ 263
[Close]
BLAST of CX287753 vs. ExPASy Swiss-Prot
Match: RRFC_ORYSJ (Ribosome-recycling factor, chloroplastic OS=Oryza sativa subsp. japonica GN=Os07g0570700 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 1.239e-13
Identity = 35/43 (81.40%), Postives = 42/43 (97.67%), Query Frame = -2 
Query:  258 ALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 386
            A+KAY+KL+KEKKLSEDNVKDLS+DLQK+TDEYMKKI++I KQ
Sbjct:  216 AIKAYDKLEKEKKLSEDNVKDLSADLQKVTDEYMKKIEAIQKQ 258
[Close]
BLAST of CX287753 vs. ExPASy Swiss-Prot
Match: RRFC_ORYSI (Ribosome-recycling factor, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_26546 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 1.239e-13
Identity = 35/43 (81.40%), Postives = 42/43 (97.67%), Query Frame = -2 
Query:  258 ALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 386
            A+KAY+KL+KEKKLSEDNVKDLS+DLQK+TDEYMKKI++I KQ
Sbjct:  216 AIKAYDKLEKEKKLSEDNVKDLSADLQKVTDEYMKKIEAIQKQ 258
[Close]
BLAST of CX287753 vs. ExPASy Swiss-Prot
Match: RRFC_DAUCA (Ribosome-recycling factor, chloroplastic (Fragment) OS=Daucus carota GN=RRF PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 1.239e-13
Identity = 34/43 (79.07%), Postives = 42/43 (97.67%), Query Frame = -2 
Query:  258 ALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 386
            A+K+Y+KL+KEKKLSEDNVKDLSSDLQK+ DEY+KK+DSI+KQ
Sbjct:  177 AIKSYDKLEKEKKLSEDNVKDLSSDLQKVIDEYIKKVDSIFKQ 219
[Close]
BLAST of CX287753 vs. ExPASy Swiss-Prot
Match: RRFC_ARATH (Ribosome-recycling factor, chloroplastic OS=Arabidopsis thaliana GN=RRF PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 2.760e-13
Identity = 35/43 (81.40%), Postives = 40/43 (93.02%), Query Frame = -2 
Query:  258 ALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 386
            ALK+Y+KL+KEKKLSEDNVKDLSSDLQKL D YMKKI+ +YKQ
Sbjct:  225 ALKSYDKLEKEKKLSEDNVKDLSSDLQKLIDVYMKKIEELYKQ 267
The following BLAST results are available for this feature:
BLAST of CX287753 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RRFC_SPIOL2.258e-1588.37Ribosome-recycling factor, chloroplastic OS=Spinac... [more]
RRFC_ORYSJ1.239e-1381.40Ribosome-recycling factor, chloroplastic OS=Oryza ... [more]
RRFC_ORYSI1.239e-1381.40Ribosome-recycling factor, chloroplastic OS=Oryza ... [more]
RRFC_DAUCA1.239e-1379.07Ribosome-recycling factor, chloroplastic (Fragment... [more]
RRFC_ARATH2.760e-1381.40Ribosome-recycling factor, chloroplastic OS=Arabid... [more]
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Properties
Property NameValue
Genbank descriptionC01013A02SK Veg1 Citrus clementina cDNA clone C01013A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287753 ID=CX287753; Name=CX287753; organism=Citrus clementina; type=EST; length=387bp
CCGTGGTCACTCTTCAGTGTTCCCAGTAAATAAGGTCACAGGTTGCTATA
CAAACAATTTTTACAAAGAGTCTAGAATAACTAATTTCCACATTTCATTT
CATAACAAAATATCCACCCGTGTCTCCCATTAGTATCAAAAAATGCCATT
CTATGGGCAAACCAAAAAATAAAGAGTGCATTCTGAGATTCACTAGAGAG
CTCACCATTACATTTGTGTGTAAACAATCATTAAACCTTCAACAACTCCT
TCTCTTTCTGTTTGTAGATGCTATCAATCTTCTTCATATACTCATCTGTT
AGTTTCTGTAAATCACTTGACAAGTCCTTCACATTGTCTTCAGAGAGCTT
CTTCTCCTTCTGAAGTTTTTCATAAGCTTTTAACGCA
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