CX287756

Overview
NameCX287756
Unique NameCX287756
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length322
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10146 contig Ccv1_Contig10146:46..367. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287756 vs. ExPASy Swiss-Prot
Match: DAD1_CITUN (Defender against cell death 1 OS=Citrus unshiu GN=DAD1 PE=3 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 7.029e-54
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 3
Query:    3 ALFHSLRSAYAATPTTLKIIDLYVGFAVFTALIQVVYMAIVGSFPFNSFLSGVLSCVGTAVLAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 317
            ALFHSLRSAYAATPTTLKIIDLYVGFAVFTALIQVVYMAIVGSFPFNSFLSGVLSCVGTAVLAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG
Sbjct:   11 ALFHSLRSAYAATPTTLKIIDLYVGFAVFTALIQVVYMAIVGSFPFNSFLSGVLSCVGTAVLAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 115          
BLAST of CX287756 vs. ExPASy Swiss-Prot
Match: DAD1_SOLLC (Defender against cell death 1 OS=Solanum lycopersicum GN=DAD1 PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 1.620e-50
Identity = 99/105 (94.29%), Postives = 102/105 (97.14%), Query Frame = 3
Query:    3 ALFHSLRSAYAATPTTLKIIDLYVGFAVFTALIQVVYMAIVGSFPFNSFLSGVLSCVGTAVLAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 317
            ALFHSLRSAYAATPT LKIIDLYV FA+ TALIQVVYMAIVGSFPFNSFLSGVLSC+GTAVLAVCLRIQVNK+NKEFKDLPPERAFADFVLCNLVLHLVIMNFLG
Sbjct:   12 ALFHSLRSAYAATPTNLKIIDLYVIFAISTALIQVVYMAIVGSFPFNSFLSGVLSCIGTAVLAVCLRIQVNKENKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 116          
BLAST of CX287756 vs. ExPASy Swiss-Prot
Match: DAD1_MALDO (Defender against cell death 1 OS=Malus domestica GN=DAD1 PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 1.050e-49
Identity = 97/105 (92.38%), Postives = 102/105 (97.14%), Query Frame = 3
Query:    3 ALFHSLRSAYAATPTTLKIIDLYVGFAVFTALIQVVYMAIVGSFPFNSFLSGVLSCVGTAVLAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 317
            ALF SLRSAY+ATPTTLKIIDLY+GFAV TALIQVVYMAIVGSFPFNSFLSGVLSC+GTAVLAVCLRIQVNK+NKEFKDL PERAFADFVLCNLVLH+VIMNFLG
Sbjct:   15 ALFDSLRSAYSATPTTLKIIDLYIGFAVSTALIQVVYMAIVGSFPFNSFLSGVLSCIGTAVLAVCLRIQVNKENKEFKDLAPERAFADFVLCNLVLHMVIMNFLG 119          
BLAST of CX287756 vs. ExPASy Swiss-Prot
Match: DAD1_ARATH (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 OS=Arabidopsis thaliana GN=DAD1 PE=2 SV=2)

HSP 1 Score: 190.274 bits (482), Expect = 2.587e-48
Identity = 95/104 (91.35%), Postives = 100/104 (96.15%), Query Frame = 3
Query:    6 LFHSLRSAYAATPTTLKIIDLYVGFAVFTALIQVVYMAIVGSFPFNSFLSGVLSCVGTAVLAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 317
            LF SLRSAY+ATPT LKIIDLYV FAVFTALIQVVYMA+VGSFPFNSFLSGVLSC+GTAVLAVCLRIQVNK+NKEFKDL PERAFADFVLCNLVLHLVI+NFLG
Sbjct:   12 LFRSLRSAYSATPTNLKIIDLYVVFAVFTALIQVVYMALVGSFPFNSFLSGVLSCIGTAVLAVCLRIQVNKENKEFKDLAPERAFADFVLCNLVLHLVIINFLG 115          
BLAST of CX287756 vs. ExPASy Swiss-Prot
Match: DAD2_ARATH (Defender against cell death 2 OS=Arabidopsis thaliana GN=DAD2 PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 4.413e-48
Identity = 94/104 (90.38%), Postives = 98/104 (94.23%), Query Frame = 3
Query:    6 LFHSLRSAYAATPTTLKIIDLYVGFAVFTALIQVVYMAIVGSFPFNSFLSGVLSCVGTAVLAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 317
            LFHSL SAY ATPT LKIIDLYV FAVFTALIQV YMA+VGSFPFNSFLSGVLSC+GTAVLAVCLRIQVNK+NKEFKDL PERAFADFVLCNLVLHLVI+NFLG
Sbjct:   12 LFHSLHSAYTATPTNLKIIDLYVCFAVFTALIQVAYMALVGSFPFNSFLSGVLSCIGTAVLAVCLRIQVNKENKEFKDLAPERAFADFVLCNLVLHLVIINFLG 115          
BLAST of CX287756 vs. ExPASy Swiss-Prot
Match: DAD1_BETVE (Defender against cell death 1 OS=Betula verrucosa GN=DAD1 PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 5.763e-48
Identity = 95/105 (90.48%), Postives = 100/105 (95.24%), Query Frame = 3
Query:    3 ALFHSLRSAYAATPTTLKIIDLYVGFAVFTALIQVVYMAIVGSFPFNSFLSGVLSCVGTAVLAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 317
            AL  SLRSAYAATP+ LKIIDLYV FAVFTALIQVVYMAIVGSFPFN+FLSG+LSC+GTAVLAVCLRIQVNK+NKEFKDL PERAFADFVLCNLVLHLVIMNFLG
Sbjct:   11 ALIQSLRSAYAATPSNLKIIDLYVVFAVFTALIQVVYMAIVGSFPFNAFLSGLLSCIGTAVLAVCLRIQVNKENKEFKDLAPERAFADFVLCNLVLHLVIMNFLG 115          
BLAST of CX287756 vs. ExPASy Swiss-Prot
Match: DAD1_ORYSJ (Defender against cell death 1 OS=Oryza sativa subsp. japonica GN=DAD1 PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 2.190e-47
Identity = 95/104 (91.35%), Postives = 96/104 (92.31%), Query Frame = 3
Query:    6 LFHSLRSAYAATPTTLKIIDLYVGFAVFTALIQVVYMAIVGSFPFNSFLSGVLSCVGTAVLAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 317
            L  SL  AYAATPT LKIIDLYV FAV TALIQVVYM IVGSFPFNSFLSGVLSC+GTAVLAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG
Sbjct:   11 LIQSLGKAYAATPTNLKIIDLYVVFAVATALIQVVYMGIVGSFPFNSFLSGVLSCIGTAVLAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 114          
BLAST of CX287756 vs. ExPASy Swiss-Prot
Match: DAD1_ORYSI (Defender against cell death 1 OS=Oryza sativa subsp. indica GN=DAD1 PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 2.190e-47
Identity = 95/104 (91.35%), Postives = 96/104 (92.31%), Query Frame = 3
Query:    6 LFHSLRSAYAATPTTLKIIDLYVGFAVFTALIQVVYMAIVGSFPFNSFLSGVLSCVGTAVLAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 317
            L  SL  AYAATPT LKIIDLYV FAV TALIQVVYM IVGSFPFNSFLSGVLSC+GTAVLAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG
Sbjct:   11 LIQSLGKAYAATPTNLKIIDLYVVFAVATALIQVVYMGIVGSFPFNSFLSGVLSCIGTAVLAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 114          
BLAST of CX287756 vs. ExPASy Swiss-Prot
Match: DAD1_PEA (Defender against cell death 1 OS=Pisum sativum GN=DAD1 PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 1.420e-46
Identity = 92/104 (88.46%), Postives = 98/104 (94.23%), Query Frame = 3
Query:    6 LFHSLRSAYAATPTTLKIIDLYVGFAVFTALIQVVYMAIVGSFPFNSFLSGVLSCVGTAVLAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 317
            LFH++ SAY+ATPT LKIIDLYV FAVFTAL+Q VYMA+VG FPFNSFLSGVLSCVGTAVLAVCLRIQVNK+NKEFKDL PERAFADFVLCNLVLHLVIMNFLG
Sbjct:   14 LFHAIWSAYSATPTNLKIIDLYVVFAVFTALLQDVYMALVGPFPFNSFLSGVLSCVGTAVLAVCLRIQVNKENKEFKDLGPERAFADFVLCNLVLHLVIMNFLG 117          
BLAST of CX287756 vs. ExPASy Swiss-Prot
Match: DAD1_PICMA (Defender against cell death 1 OS=Picea mariana GN=DAD1 PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 2.421e-46
Identity = 90/105 (85.71%), Postives = 99/105 (94.29%), Query Frame = 3
Query:    3 ALFHSLRSAYAATPTTLKIIDLYVGFAVFTALIQVVYMAIVGSFPFNSFLSGVLSCVGTAVLAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 317
            AL  SLRSAY+ATPT LKIIDLYV +A+ TA++QVVYMAIVGSFPFN+FLSGVLSC GTAVLAVCLR+QVNK+N+EFKDLPPERAFADFVLCNLVLHLVIMNFLG
Sbjct:   11 ALIASLRSAYSATPTKLKIIDLYVVYAILTAVVQVVYMAIVGSFPFNAFLSGVLSCTGTAVLAVCLRMQVNKENREFKDLPPERAFADFVLCNLVLHLVIMNFLG 115          
The following BLAST results are available for this feature:
BLAST of CX287756 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
DAD1_CITUN7.029e-54100.00Defender against cell death 1 OS=Citrus unshiu GN=... [more]
DAD1_SOLLC1.620e-5094.29Defender against cell death 1 OS=Solanum lycopersi... [more]
DAD1_MALDO1.050e-4992.38Defender against cell death 1 OS=Malus domestica G... [more]
DAD1_ARATH2.587e-4891.35Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
DAD2_ARATH4.413e-4890.38Defender against cell death 2 OS=Arabidopsis thali... [more]
DAD1_BETVE5.763e-4890.48Defender against cell death 1 OS=Betula verrucosa ... [more]
DAD1_ORYSJ2.190e-4791.35Defender against cell death 1 OS=Oryza sativa subs... [more]
DAD1_ORYSI2.190e-4791.35Defender against cell death 1 OS=Oryza sativa subs... [more]
DAD1_PEA1.420e-4688.46Defender against cell death 1 OS=Pisum sativum GN=... [more]
DAD1_PICMA2.421e-4685.71Defender against cell death 1 OS=Picea mariana GN=... [more]

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Properties
Property NameValue
Genbank descriptionC01013A05SK Veg1 Citrus clementina cDNA clone C01013A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287756 ID=CX287756; Name=CX287756; organism=Citrus clementina; type=EST; length=322bp
AAGCCCTTTTCCATTCCCTTCGCTCTGCTTATGCTGCCACTCCCACGACT
CTTAAGATCATCGATCTGTATGTGGGTTTCGCGGTTTTTACTGCCTTAAT
TCAGGTAGTTTACATGGCTATTGTTGGATCCTTCCCATTCAACTCTTTTC
TTTCAGGAGTACTTTCTTGTGTTGGGACGGCAGTCCTTGCTGTTTGTCTA
CGTATTCAAGTGAACAAGGACAACAAGGAATTTAAGGACCTACCACCAGA
GCGAGCTTTTGCAGACTTTGTTCTCTGCAATTTGGTGCTGCATTTGGTGA
TCATGAATTTCCTTGGATAAAC
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