CX287764

Overview
NameCX287764
Unique NameCX287764
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length327
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13876 contig Ccv1_Contig13876:850..1176. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of CX287764 vs. ExPASy Swiss-Prot
Match: SF3BB_ARATH (Uncharacterized protein At4g14342 OS=Arabidopsis thaliana GN=At4g14342 PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 5.193e-44
Identity = 81/87 (93.10%), Postives = 86/87 (98.85%), Query Frame = 3
Query:   15 MQASDRFNINSQLEHLQAKYIGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD 275
            MQASDRFNINSQLEHLQAKY+GTGHADL+RFEWAVNIQRDSYASYIGHYPML+YFAIAENESIGRE YNFMQKMLLPCGLPPERE++
Sbjct:    1 MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYIGHYPMLSYFAIAENESIGRERYNFMQKMLLPCGLPPEREEE 87          
BLAST of CX287764 vs. ExPASy Swiss-Prot
Match: SF3BA_ARATH (Uncharacterized protein At3g23325 OS=Arabidopsis thaliana GN=At3g23325 PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 5.193e-44
Identity = 81/87 (93.10%), Postives = 85/87 (97.70%), Query Frame = 3
Query:   15 MQASDRFNINSQLEHLQAKYIGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD 275
            MQASDRFNINSQLEHLQAKY+GTGHADL+RFEW VNIQRDSYASYIGHYPML+YFAIAENESIGRE YNFMQKMLLPCGLPPERED+
Sbjct:    1 MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWTVNIQRDSYASYIGHYPMLSYFAIAENESIGRERYNFMQKMLLPCGLPPEREDE 87          
BLAST of CX287764 vs. ExPASy Swiss-Prot
Match: SF3B5_DROME (Probable splicing factor 3B subunit 5 OS=Drosophila melanogaster GN=CG11985 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.589e-27
Identity = 54/83 (65.06%), Postives = 66/83 (79.52%), Query Frame = 3
Query:   27 DRFNINSQLEHLQAKYIGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD 275
            +R+NI+SQLEHLQ+KYIGTGHAD  +FEW  N  RDS ASY+GHY +L YFAIAENES  R  +N M++ML PCG PPE+ +D
Sbjct:    3 ERYNIHSQLEHLQSKYIGTGHADTTKFEWLTNQHRDSLASYMGHYDILNYFAIAENESKARVRFNLMERMLQPCGPPPEKLED 85          
BLAST of CX287764 vs. ExPASy Swiss-Prot
Match: SF3B5_HUMAN (Splicing factor 3B subunit 5 OS=Homo sapiens GN=SF3B5 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.883e-26
Identity = 51/84 (60.71%), Postives = 66/84 (78.57%), Query Frame = 3
Query:   24 SDRFNINSQLEHLQAKYIGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD 275
            +DR+ I+SQLEHLQ+KYIGTGHAD  ++EW VN  RDSY SY+GH+ +L YFAIAENES  R  +N M+KML PCG P ++ ++
Sbjct:    2 TDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESKARVRFNLMEKMLQPCGPPADKPEE 85          
BLAST of CX287764 vs. ExPASy Swiss-Prot
Match: SF3B5_BOVIN (Splicing factor 3B subunit 5 OS=Bos taurus GN=SF3B5 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.883e-26
Identity = 51/84 (60.71%), Postives = 66/84 (78.57%), Query Frame = 3
Query:   24 SDRFNINSQLEHLQAKYIGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD 275
            +DR+ I+SQLEHLQ+KYIGTGHAD  ++EW VN  RDSY SY+GH+ +L YFAIAENES  R  +N M+KML PCG P ++ ++
Sbjct:    2 TDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESKARVRFNLMEKMLQPCGPPADKPEE 85          
BLAST of CX287764 vs. ExPASy Swiss-Prot
Match: SF3B5_MOUSE (Splicing factor 3B subunit 5 OS=Mus musculus GN=Sf3b5 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 7.051e-25
Identity = 50/84 (59.52%), Postives = 65/84 (77.38%), Query Frame = 3
Query:   24 SDRFNINSQLEHLQAKYIGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD 275
            +DR+ I+SQLEHLQ+KYIGTGHAD  ++EW VN  RDSY SY+GH+ +L YFAIAENES  R  +N M+KML P G P ++ ++
Sbjct:    2 TDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESKARVRFNLMEKMLQPSGPPADKPEE 85          
BLAST of CX287764 vs. ExPASy Swiss-Prot
Match: SF3B5_DICDI (Splicing factor 3B subunit 5 OS=Dictyostelium discoideum GN=sf3b5 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.126e-22
Identity = 46/84 (54.76%), Postives = 64/84 (76.19%), Query Frame = 3
Query:   24 SDRFNINSQLEHLQAKYIGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD 275
            S+R ++NSQLEHLQ +Y+GTGHAD+++ EW  N  RDS +S+IGH   L+ F+IAENES+GR  YN + KM+ PCG  P+ +D+
Sbjct:    2 SERESLNSQLEHLQMRYVGTGHADISKHEWLTNQHRDSLSSFIGHSSFLSLFSIAENESVGRVRYNTLTKMISPCGPAPKIKDN 85          
BLAST of CX287764 vs. ExPASy Swiss-Prot
Match: YHV5_SCHPO (Uncharacterized protein C211.05 OS=Schizosaccharomyces pombe GN=SPBC211.05 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.065e-15
Identity = 35/79 (44.30%), Postives = 52/79 (65.82%), Query Frame = 3
Query:   24 SDRFNINSQLEHLQAKYIGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESIGREHYNFMQKMLLPCGLPP 260
            +DR    ++LE LQA+Y+G G+A   ++EW VN  RD+ +S +GH P+LAY A A  E   +   N ++KM++PCG PP
Sbjct:    2 ADRLRSQAKLEQLQARYVGVGNAFTTKYEWMVNQHRDTLSSVVGHPPLLAYMATALGEPRVQVRKNLLEKMIMPCGPPP 80          
The following BLAST results are available for this feature:
BLAST of CX287764 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
SF3BB_ARATH5.193e-4493.10Uncharacterized protein At4g14342 OS=Arabidopsis t... [more]
SF3BA_ARATH5.193e-4493.10Uncharacterized protein At3g23325 OS=Arabidopsis t... [more]
SF3B5_DROME2.589e-2765.06Probable splicing factor 3B subunit 5 OS=Drosophil... [more]
SF3B5_HUMAN4.883e-2660.71Splicing factor 3B subunit 5 OS=Homo sapiens GN=SF... [more]
SF3B5_BOVIN4.883e-2660.71Splicing factor 3B subunit 5 OS=Bos taurus GN=SF3B... [more]
SF3B5_MOUSE7.051e-2559.52Splicing factor 3B subunit 5 OS=Mus musculus GN=Sf... [more]
SF3B5_DICDI1.126e-2254.76Splicing factor 3B subunit 5 OS=Dictyostelium disc... [more]
YHV5_SCHPO5.065e-1544.30Uncharacterized protein C211.05 OS=Schizosaccharom... [more]
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Properties
Property NameValue
Genbank descriptionC01013B01SK Veg1 Citrus clementina cDNA clone C01013B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287764 ID=CX287764; Name=CX287764; organism=Citrus clementina; type=EST; length=327bp
AAAGCACAGCAAAAATGCAGGCGAGTGATAGGTTTAATATAAACTCCCAG
CTAGAGCATCTGCAAGCCAAATACATTGGTACTGGCCATGCTGATTTGAA
CAGATTTGAATGGGCTGTGAACATTCAGCGTGATAGCTATGCCTCGTATA
TTGGGCATTACCCTATGTTGGCCTATTTTGCTATTGCCGAGAATGAATCT
ATTGGAAGGGAACACTATAACTTTATGCAGAAAATGCTTTTGCCTTGCGG
CTTACCCCCTGAAAGAGAAGATGATTGAGAGTTTAGGATGCCCTTTCTGA
GAAATGAAACATTTTGGGCTCCAGCTC
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