CX287764
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX287764 vs. ExPASy Swiss-Prot
Match: SF3BB_ARATH (Uncharacterized protein At4g14342 OS=Arabidopsis thaliana GN=At4g14342 PE=3 SV=1) HSP 1 Score: 176.022 bits (445), Expect = 5.193e-44 Identity = 81/87 (93.10%), Postives = 86/87 (98.85%), Query Frame = 3 Query: 15 MQASDRFNINSQLEHLQAKYIGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD 275 MQASDRFNINSQLEHLQAKY+GTGHADL+RFEWAVNIQRDSYASYIGHYPML+YFAIAENESIGRE YNFMQKMLLPCGLPPERE++ Sbjct: 1 MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYIGHYPMLSYFAIAENESIGRERYNFMQKMLLPCGLPPEREEE 87
BLAST of CX287764 vs. ExPASy Swiss-Prot
Match: SF3BA_ARATH (Uncharacterized protein At3g23325 OS=Arabidopsis thaliana GN=At3g23325 PE=2 SV=1) HSP 1 Score: 176.022 bits (445), Expect = 5.193e-44 Identity = 81/87 (93.10%), Postives = 85/87 (97.70%), Query Frame = 3 Query: 15 MQASDRFNINSQLEHLQAKYIGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD 275 MQASDRFNINSQLEHLQAKY+GTGHADL+RFEW VNIQRDSYASYIGHYPML+YFAIAENESIGRE YNFMQKMLLPCGLPPERED+ Sbjct: 1 MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWTVNIQRDSYASYIGHYPMLSYFAIAENESIGRERYNFMQKMLLPCGLPPEREDE 87
BLAST of CX287764 vs. ExPASy Swiss-Prot
Match: SF3B5_DROME (Probable splicing factor 3B subunit 5 OS=Drosophila melanogaster GN=CG11985 PE=1 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 2.589e-27 Identity = 54/83 (65.06%), Postives = 66/83 (79.52%), Query Frame = 3 Query: 27 DRFNINSQLEHLQAKYIGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD 275 +R+NI+SQLEHLQ+KYIGTGHAD +FEW N RDS ASY+GHY +L YFAIAENES R +N M++ML PCG PPE+ +D Sbjct: 3 ERYNIHSQLEHLQSKYIGTGHADTTKFEWLTNQHRDSLASYMGHYDILNYFAIAENESKARVRFNLMERMLQPCGPPPEKLED 85
BLAST of CX287764 vs. ExPASy Swiss-Prot
Match: SF3B5_HUMAN (Splicing factor 3B subunit 5 OS=Homo sapiens GN=SF3B5 PE=1 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 4.883e-26 Identity = 51/84 (60.71%), Postives = 66/84 (78.57%), Query Frame = 3 Query: 24 SDRFNINSQLEHLQAKYIGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD 275 +DR+ I+SQLEHLQ+KYIGTGHAD ++EW VN RDSY SY+GH+ +L YFAIAENES R +N M+KML PCG P ++ ++ Sbjct: 2 TDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESKARVRFNLMEKMLQPCGPPADKPEE 85
BLAST of CX287764 vs. ExPASy Swiss-Prot
Match: SF3B5_BOVIN (Splicing factor 3B subunit 5 OS=Bos taurus GN=SF3B5 PE=3 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 4.883e-26 Identity = 51/84 (60.71%), Postives = 66/84 (78.57%), Query Frame = 3 Query: 24 SDRFNINSQLEHLQAKYIGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD 275 +DR+ I+SQLEHLQ+KYIGTGHAD ++EW VN RDSY SY+GH+ +L YFAIAENES R +N M+KML PCG P ++ ++ Sbjct: 2 TDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESKARVRFNLMEKMLQPCGPPADKPEE 85
BLAST of CX287764 vs. ExPASy Swiss-Prot
Match: SF3B5_MOUSE (Splicing factor 3B subunit 5 OS=Mus musculus GN=Sf3b5 PE=2 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 7.051e-25 Identity = 50/84 (59.52%), Postives = 65/84 (77.38%), Query Frame = 3 Query: 24 SDRFNINSQLEHLQAKYIGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD 275 +DR+ I+SQLEHLQ+KYIGTGHAD ++EW VN RDSY SY+GH+ +L YFAIAENES R +N M+KML P G P ++ ++ Sbjct: 2 TDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESKARVRFNLMEKMLQPSGPPADKPEE 85
BLAST of CX287764 vs. ExPASy Swiss-Prot
Match: SF3B5_DICDI (Splicing factor 3B subunit 5 OS=Dictyostelium discoideum GN=sf3b5 PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 1.126e-22 Identity = 46/84 (54.76%), Postives = 64/84 (76.19%), Query Frame = 3 Query: 24 SDRFNINSQLEHLQAKYIGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD 275 S+R ++NSQLEHLQ +Y+GTGHAD+++ EW N RDS +S+IGH L+ F+IAENES+GR YN + KM+ PCG P+ +D+ Sbjct: 2 SERESLNSQLEHLQMRYVGTGHADISKHEWLTNQHRDSLSSFIGHSSFLSLFSIAENESVGRVRYNTLTKMISPCGPAPKIKDN 85
BLAST of CX287764 vs. ExPASy Swiss-Prot
Match: YHV5_SCHPO (Uncharacterized protein C211.05 OS=Schizosaccharomyces pombe GN=SPBC211.05 PE=2 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 5.065e-15 Identity = 35/79 (44.30%), Postives = 52/79 (65.82%), Query Frame = 3 Query: 24 SDRFNINSQLEHLQAKYIGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESIGREHYNFMQKMLLPCGLPP 260 +DR ++LE LQA+Y+G G+A ++EW VN RD+ +S +GH P+LAY A A E + N ++KM++PCG PP Sbjct: 2 ADRLRSQAKLEQLQARYVGVGNAFTTKYEWMVNQHRDTLSSVVGHPPLLAYMATALGEPRVQVRKNLLEKMIMPCGPPP 80 The following BLAST results are available for this feature:
BLAST of CX287764 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX287764 ID=CX287764; Name=CX287764; organism=Citrus clementina; type=EST; length=327bpback to top |