CX287765

Overview
NameCX287765
Unique NameCX287765
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length335
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX287765_ssr2 microsatellite CX287765_ssr2:2..22. BLAST: Citrus ESTs to Prunus persica proteins V1
CX287765_ssr30 microsatellite CX287765_ssr30:30..44. BLAST: Citrus ESTs to Prunus persica proteins V1
CX287765_ssr45 microsatellite CX287765_ssr45:45..56. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX287765 vs. ExPASy Swiss-Prot
Match: VPS41_SOLLC (Vacuolar protein sorting-associated protein 41 homolog OS=Solanum lycopersicum GN=VPS41 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 2.020e-40
Identity = 79/91 (86.81%), Postives = 84/91 (92.31%), Query Frame = 3
Query:   63 PRLKYQRMGGSLPSLLANDAASCVAVAERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEK 335
            PRLKYQRMG S+PSLL+ DAA+C+AVAERMIALGTH G VHILDFLGNQVKEF AHTAAVNDL FD DGEYVGSCSDDGSVVINSLFTDE+
Sbjct:   36 PRLKYQRMGASVPSLLSADAATCIAVAERMIALGTHGGAVHILDFLGNQVKEFAAHTAAVNDLCFDTDGEYVGSCSDDGSVVINSLFTDER 126          
BLAST of CX287765 vs. ExPASy Swiss-Prot
Match: VPS41_ARATH (Vacuolar protein sorting-associated protein 41 homolog OS=Arabidopsis thaliana GN=VPS41 PE=2 SV=3)

HSP 1 Score: 155.992 bits (393), Expect = 5.500e-38
Identity = 73/91 (80.22%), Postives = 84/91 (92.31%), Query Frame = 3
Query:   63 PRLKYQRMGGSLPSLLANDAASCVAVAERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEK 335
            PRLKYQRMGG++P+LL+NDAASC+AVA RMIALGTH GTV ILD LGNQVKEF AHTA VND++FD +GEY+GSCSDDGSVVINSLFTD++
Sbjct:   42 PRLKYQRMGGNVPALLSNDAASCIAVAARMIALGTHDGTVRILDLLGNQVKEFRAHTAPVNDINFDTEGEYIGSCSDDGSVVINSLFTDDE 132          
BLAST of CX287765 vs. ExPASy Swiss-Prot
Match: VPS41_HUMAN (Vacuolar protein sorting-associated protein 41 homolog OS=Homo sapiens GN=VPS41 PE=2 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 5.352e-17
Identity = 37/91 (40.66%), Postives = 59/91 (64.84%), Query Frame = 3
Query:   63 PRLKYQRMGGSLPSLLANDAASCVAVAERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEK 335
            P+LKY+R+   +  +L  DAASC+ V ++ +ALGTH G V++LD  GN  ++F      +N +S D  GE++G CS+DG V +  L++ E+
Sbjct:   28 PKLKYERLSNGVTEILQKDAASCMTVHDKFLALGTHYGKVYLLDVQGNITQKFDVSPVKINQISLDESGEHMGVCSEDGKVQVFGLYSGEE 118          
BLAST of CX287765 vs. ExPASy Swiss-Prot
Match: VPS41_MOUSE (Vacuolar protein sorting-associated protein 41 homolog OS=Mus musculus GN=Vps41 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.557e-16
Identity = 36/91 (39.56%), Postives = 59/91 (64.84%), Query Frame = 3
Query:   63 PRLKYQRMGGSLPSLLANDAASCVAVAERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEK 335
            P+LKY+R+   +  +L  DAASC+ V ++ +ALGTH G V++LD  GN  ++F      +N +S D  GE++G CS+DG + +  L++ E+
Sbjct:   27 PKLKYERLSNGVTEILQKDAASCMTVHDKFLALGTHYGKVYLLDVQGNITQKFDVSPVKINQISLDDSGEHMGVCSEDGKLQVFGLYSGEE 117          
The following BLAST results are available for this feature:
BLAST of CX287765 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
VPS41_SOLLC2.020e-4086.81Vacuolar protein sorting-associated protein 41 hom... [more]
VPS41_ARATH5.500e-3880.22Vacuolar protein sorting-associated protein 41 hom... [more]
VPS41_HUMAN5.352e-1740.66Vacuolar protein sorting-associated protein 41 hom... [more]
VPS41_MOUSE1.557e-1639.56Vacuolar protein sorting-associated protein 41 hom... [more]
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Properties
Property NameValue
Genbank descriptionC01013B02SK Veg1 Citrus clementina cDNA clone C01013B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287765 ID=CX287765; Name=CX287765; organism=Citrus clementina; type=EST; length=335bp
GAGAAGAAGAAGAAGAAGAAGACGAAGATGAAGAAGAAGAAGAAGAGGAG
GAGGAGGAAGAGCCAAGGCTCAAGTATCAAAGAATGGGAGGCAGCTTACC
TTCTCTTTTGGCAAACGACGCCGCTTCGTGCGTTGCTGTAGCTGAACGGA
TGATCGCTCTCGGTACTCACGCCGGCACAGTTCATATTCTTGATTTTTTG
GGGAATCAGGTTAAGGAGTTTCCTGCTCATACTGCTGCTGTCAACGACCT
TAGCTTTGATGTAGATGGCGAATATGTAGGAAGTTGTTCGGATGATGGTT
CTGTTGTGATAAATAGCCTTTTCACTGATGAAAAA
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