CX287768

Overview
NameCX287768
Unique NameCX287768
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length335
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287768 vs. ExPASy Swiss-Prot
Match: RCA_ARATH (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidopsis thaliana GN=RCA PE=1 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 1.447e-38
Identity = 77/111 (69.37%), Postives = 86/111 (77.48%), Query Frame = 2
Query:    2 EVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSD 334
            EVR +            LVNS+E  P FEQP MT EKL+EYGNM+V EQENVKRVQLA+ YLS+AALG+ANADAI  G FYGK AQQ+N+PVPEGCTDP AENFDPTARSD
Sbjct:  356 EVRKFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLSQAALGDANADAIGRGTFYGKGAQQVNLPVPEGCTDPVAENFDPTARSD 466          
BLAST of CX287768 vs. ExPASy Swiss-Prot
Match: RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 2.090e-37
Identity = 72/111 (64.86%), Postives = 87/111 (78.38%), Query Frame = 2
Query:    2 EVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSD 334
            EVR W            LVNSK+  P FEQP MT++KL+EYGNM+VQEQENVKRVQLAD+Y+S AALG+AN DAI  G F+GKAAQQ+++PV +GCTDP A+N+DPTARSD
Sbjct:  354 EVRKWVNSVGVDNVGKKLVNSKDGPPVFEQPEMTLQKLMEYGNMLVQEQENVKRVQLADQYMSSAALGDANKDAIDRGTFFGKAAQQVSLPVAQGCTDPEAKNYDPTARSD 464          
BLAST of CX287768 vs. ExPASy Swiss-Prot
Match: RCA_ORYSJ (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 2.730e-37
Identity = 74/112 (66.07%), Postives = 91/112 (81.25%), Query Frame = 2
Query:    2 EVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFYGKAAQQM-NVPVPEGCTDPTAENFDPTARSD 334
            EVR W            LVNS+E  P FEQP+MT+EKL+EYG M+V+EQENVKRVQLA++YLSEAALG+AN+DA+++G+FYG+ AQQ  N+PVPEGCTDP A+NFDPTARSD
Sbjct:  347 EVRKWVSDTGVENIGKRLVNSREGPPEFEQPKMTIEKLMEYGYMLVKEQENVKRVQLAEQYLSEAALGDANSDAMKTGSFYGQGAQQAGNLPVPEGCTDPVAKNFDPTARSD 458          
BLAST of CX287768 vs. ExPASy Swiss-Prot
Match: RCA1_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata GN=RCA1 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 6.081e-37
Identity = 78/113 (69.03%), Postives = 89/113 (78.76%), Query Frame = 2
Query:    2 EVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFY-GKAAQQM-NVPVPEGCTDPTAENFDPTARSD 334
            EVR W            LVNSKE  P+FEQP+MT++KLL YG M+VQEQENVKRVQLADKY+SEAALG+AN DAI+ G FY G+AAQQ+ NVPVPEGCTDP A N+DPTARSD
Sbjct:  356 EVRKWVSEVGVDTIGKKLVNSKEGPPSFEQPKMTIDKLLGYGGMLVQEQENVKRVQLADKYMSEAALGDANNDAIKRGTFYGGQAAQQVGNVPVPEGCTDPQATNYDPTARSD 468          
BLAST of CX287768 vs. ExPASy Swiss-Prot
Match: RCAA_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.311e-36
Identity = 71/111 (63.96%), Postives = 88/111 (79.28%), Query Frame = 2
Query:    2 EVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSD 334
            EVR W            LVNS++   TFEQP+MT+EKLLEYG+M+VQEQ+NVKRVQLAD Y+S+AALG+AN DA+++G+FYGK AQQ  +PVPEGCTD  A+N+DPTARSD
Sbjct:  346 EVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYGKGAQQGTLPVPEGCTDQNAKNYDPTARSD 456          
BLAST of CX287768 vs. ExPASy Swiss-Prot
Match: RCA_MALDO (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Malus domestica GN=RCA PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.451e-27
Identity = 58/82 (70.73%), Postives = 65/82 (79.27%), Query Frame = 2
Query:    2 EVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFYG 247
            EVR W            LVNSKE  PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLADKYLSEAALG+AN+DA+ +G FYG
Sbjct:  356 EVRKWITGVGVDSIGKKLVNSKEGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLSEAALGDANSDAMNTGTFYG 437          
BLAST of CX287768 vs. ExPASy Swiss-Prot
Match: RCAB_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic OS=Hordeum vulgare GN=RCAB PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.835e-25
Identity = 55/83 (66.27%), Postives = 66/83 (79.52%), Query Frame = 2
Query:    2 EVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFYGK 250
            EVR W            LVNS+E  PTF+QP+MT+EKL+EYG+M+VQEQENVKRVQLADKYLSEAALG+AN DA+++G FYGK
Sbjct:  343 EVRKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEYGHMLVQEQENVKRVQLADKYLSEAALGQANDDAMKTGAFYGK 425          
BLAST of CX287768 vs. ExPASy Swiss-Prot
Match: RCA_PHAAU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus aureus GN=RCA PE=2 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 2.029e-24
Identity = 53/81 (65.43%), Postives = 64/81 (79.01%), Query Frame = 2
Query:    2 EVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFY 244
            EVR W            LVNSKE  PTF+QP+M+++KLL+YGNM+VQEQENVKRVQLADKYL+EAALG AN DAI+SG+F+
Sbjct:  358 EVRKWISGVGVDATGKKLVNSKEGPPTFDQPKMSLDKLLQYGNMLVQEQENVKRVQLADKYLNEAALGNANEDAIKSGSFF 438          
BLAST of CX287768 vs. ExPASy Swiss-Prot
Match: RCA1_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.029e-24
Identity = 54/81 (66.67%), Postives = 63/81 (77.78%), Query Frame = 2
Query:    2 EVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFY 244
            EVR W            L+NS +  PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLADKYL EAALG+ANADAI +G+F+
Sbjct:  360 EVRKWVSGTGIEKIGDKLLNSFDGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLKEAALGDANADAINNGSFF 440          
BLAST of CX287768 vs. ExPASy Swiss-Prot
Match: RCA2_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Larrea tridentata GN=RCA2 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.521e-24
Identity = 53/80 (66.25%), Postives = 62/80 (77.50%), Query Frame = 2
Query:    2 EVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNF 241
            EVR W            LVNSKE  PTFEQP+MT++KLL+YGNM+V+EQENVKRVQLADKY+SEAALG+AN DAI+ G F
Sbjct:  356 EVRKWVSEVGVDTIGKKLVNSKEGPPTFEQPKMTIDKLLQYGNMLVEEQENVKRVQLADKYMSEAALGDANQDAIKRGTF 435          
The following BLAST results are available for this feature:
BLAST of CX287768 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RCA_ARATH1.447e-3869.37Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SPIOL2.090e-3764.86Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ORYSJ2.730e-3766.07Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_LARTR6.081e-3769.03Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAA_HORVU2.311e-3663.96Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MALDO7.451e-2770.73Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAB_HORVU1.835e-2566.27Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAAU2.029e-2465.43Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_TOBAC2.029e-2466.67Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_LARTR4.521e-2466.25Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionC01013B05SK Veg1 Citrus clementina cDNA clone C01013B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287768 ID=CX287768; Name=CX287768; organism=Citrus clementina; type=EST; length=335bp
TGAGGTGAGGAATTGGATCTCTGGTATTGGTGTTGGAAGCATTGGCAAGA
GCCTTGTGAACTCAAAGGAAGCAGCCCCAACATTCGAGCAACCAAGGATG
ACAATGGAGAAGCTGCTCGAGTACGGAAACATGATTGTGCAAGAGCAAGA
GAATGTGAAGAGAGTTCAGTTGGCTGACAAGTATTTGAGTGAGGCCGCTC
TTGGTGAAGCTAATGCAGATGCTATTCAGAGTGGAAATTTCTATGGCAAA
GCAGCCCAGCAAATGAATGTTCCAGTTCCTGAAGGATGTACTGATCCTAC
TGCAGAAAACTTTGATCCAACTGCAAGAAGTGATG
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