CX287797

Overview
NameCX287797
Unique NameCX287797
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length332
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15214 contig Ccv1_Contig15214:124..455. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287797 vs. ExPASy Swiss-Prot
Match: NACA3_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 3 OS=Arabidopsis thaliana GN=At5g13850 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.247e-22
Identity = 51/55 (92.73%), Postives = 53/55 (96.36%), Query Frame = 1
Query:  166 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSS 330
            AMLKLGMKPI GVSRVTVKKSKNILFVISKPDVFKSP SDTY++FGEAKIEDLSS
Sbjct:   65 AMLKLGMKPITGVSRVTVKKSKNILFVISKPDVFKSPASDTYVIFGEAKIEDLSS 119          
BLAST of CX287797 vs. ExPASy Swiss-Prot
Match: NACA1_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 1 OS=Arabidopsis thaliana GN=At3g12390 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.247e-22
Identity = 51/55 (92.73%), Postives = 53/55 (96.36%), Query Frame = 1
Query:  166 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSS 330
            AMLKLGMKPI GVSRVTVKKSKNILFVISKPDVFKSP SDTY++FGEAKIEDLSS
Sbjct:   69 AMLKLGMKPITGVSRVTVKKSKNILFVISKPDVFKSPASDTYVIFGEAKIEDLSS 123          
BLAST of CX287797 vs. ExPASy Swiss-Prot
Match: NACA_PINTA (Nascent polypeptide-associated complex subunit alpha-like protein OS=Pinus taeda PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.236e-21
Identity = 50/55 (90.91%), Postives = 52/55 (94.55%), Query Frame = 1
Query:  166 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSS 330
            AMLKLGMKP+ GVSRVT+KKSKNILFVIS PDVFKSPTSDTYI FGEAKIEDLSS
Sbjct:   72 AMLKLGMKPVSGVSRVTIKKSKNILFVISNPDVFKSPTSDTYIAFGEAKIEDLSS 126          
BLAST of CX287797 vs. ExPASy Swiss-Prot
Match: NACA2_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 2 OS=Arabidopsis thaliana GN=At3g49470 PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 8.855e-20
Identity = 44/55 (80.00%), Postives = 52/55 (94.55%), Query Frame = 1
Query:  166 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSS 330
            AMLKLGMKP+ GVSRVT+K++KN+LF ISKPDVFKSP S+TY++FGEAKIEDLSS
Sbjct:   79 AMLKLGMKPVTGVSRVTIKRTKNVLFFISKPDVFKSPHSETYVIFGEAKIEDLSS 133          
BLAST of CX287797 vs. ExPASy Swiss-Prot
Match: NACA4_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 4 OS=Arabidopsis thaliana GN=At4g10480 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.510e-19
Identity = 43/55 (78.18%), Postives = 52/55 (94.55%), Query Frame = 1
Query:  166 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSS 330
            AMLKLGMKP+  VSRVT+K+SKN+LFVISKPDVFKSP S+TY++FGEAKI+D+SS
Sbjct:   74 AMLKLGMKPVTDVSRVTIKRSKNVLFVISKPDVFKSPNSETYVIFGEAKIDDMSS 128          
BLAST of CX287797 vs. ExPASy Swiss-Prot
Match: NACA5_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 5 OS=Arabidopsis thaliana GN=At1g33040 PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 3.720e-18
Identity = 39/55 (70.91%), Postives = 52/55 (94.55%), Query Frame = 1
Query:  166 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSS 330
            A+LKLGMKP+  VSRVT+K++KN+LFVISKPDV+KSP ++TY++FGEAK++DLSS
Sbjct:   71 AVLKLGMKPVSDVSRVTIKRAKNVLFVISKPDVYKSPNAETYVIFGEAKVDDLSS 125          
BLAST of CX287797 vs. ExPASy Swiss-Prot
Match: NACAD_MOUSE (NAC-alpha domain-containing protein 1 OS=Mus musculus GN=Nacad PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.859e-18
Identity = 42/54 (77.78%), Postives = 50/54 (92.59%), Query Frame = 1
Query:  166 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLS 327
            AM KLG++ I GV+R+T++KSKNILFVI+KPDVFKSP SDTY+VFGEAKIEDLS
Sbjct: 1363 AMSKLGLRQIQGVTRITIQKSKNILFVIAKPDVFKSPASDTYVVFGEAKIEDLS 1416          
BLAST of CX287797 vs. ExPASy Swiss-Prot
Match: NACAD_HUMAN (NAC-alpha domain-containing protein 1 OS=Homo sapiens GN=NACAD PE=2 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 4.859e-18
Identity = 42/54 (77.78%), Postives = 50/54 (92.59%), Query Frame = 1
Query:  166 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLS 327
            AM KLG++ I GV+R+T++KSKNILFVI+KPDVFKSP SDTY+VFGEAKIEDLS
Sbjct: 1420 AMSKLGLRQIQGVTRITIQKSKNILFVIAKPDVFKSPASDTYVVFGEAKIEDLS 1473          
BLAST of CX287797 vs. ExPASy Swiss-Prot
Match: NACA_XENTR (Nascent polypeptide-associated complex subunit alpha OS=Xenopus tropicalis GN=naca PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.346e-18
Identity = 42/54 (77.78%), Postives = 50/54 (92.59%), Query Frame = 1
Query:  166 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLS 327
            AM KLG++ + GV+RVT++KSKNILFVI+KPDV+KSP SDTYIVFGEAKIEDLS
Sbjct:   78 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLS 131          
BLAST of CX287797 vs. ExPASy Swiss-Prot
Match: NACA_XENLA (Nascent polypeptide-associated complex subunit alpha OS=Xenopus laevis GN=naca PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.346e-18
Identity = 42/54 (77.78%), Postives = 50/54 (92.59%), Query Frame = 1
Query:  166 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLS 327
            AM KLG++ + GV+RVT++KSKNILFVI+KPDV+KSP SDTYIVFGEAKIEDLS
Sbjct:   77 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLS 130          
The following BLAST results are available for this feature:
BLAST of CX287797 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
NACA3_ARATH4.247e-2292.73Nascent polypeptide-associated complex subunit alp... [more]
NACA1_ARATH4.247e-2292.73Nascent polypeptide-associated complex subunit alp... [more]
NACA_PINTA1.236e-2190.91Nascent polypeptide-associated complex subunit alp... [more]
NACA2_ARATH8.855e-2080.00Nascent polypeptide-associated complex subunit alp... [more]
NACA4_ARATH1.510e-1978.18Nascent polypeptide-associated complex subunit alp... [more]
NACA5_ARATH3.720e-1870.91Nascent polypeptide-associated complex subunit alp... [more]
NACAD_MOUSE4.859e-1877.78NAC-alpha domain-containing protein 1 OS=Mus muscu... [more]
NACAD_HUMAN4.859e-1877.78NAC-alpha domain-containing protein 1 OS=Homo sapi... [more]
NACA_XENTR6.346e-1877.78Nascent polypeptide-associated complex subunit alp... [more]
NACA_XENLA6.346e-1877.78Nascent polypeptide-associated complex subunit alp... [more]

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Properties
Property NameValue
Genbank descriptionC01013D10SK Veg1 Citrus clementina cDNA clone C01013D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287797 ID=CX287797; Name=CX287797; organism=Citrus clementina; type=EST; length=332bp
GAAGAGCAAAAGCTCAACCCCGATGAGCCTGTAGTCGAGGACGACGATGA
TGAGGATGATGATGAGGAGGATGAGGATGATGACAAGGATGAAGACGATG
TGGAAGGGAAAGGAGATGGAAGTGGTCGCTCAAAACAGAGCAGGAGTGAA
AAGAAGAGTCGGAAAGCAATGTTGAAACTTGGAATGAAGCCAATCCCTGG
TGTCAGTCGAGTTACAGTTAAAAAGAGCAAAAATATTTTGTTTGTTATCT
CCAAACCAGATGTTTTCAAGAGTCCTACATCTGACACATACATTGTCTTT
GGGGAAGCAAAGATCGAGGATCTGAGTTCACA
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