CX287805

Overview
NameCX287805
Unique NameCX287805
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length485
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ISAM1_ARATH (Iron-sulfur assembly protein IscA-like 1, mitochondrial OS=Arabidopsis thaliana GN=At2g16710 PE=2 SV=2)

HSP 1 Score: 181.415 bits (459), Expect = 1.810e-45
Identity = 84/97 (86.60%), Postives = 95/97 (97.94%), Query Frame = 3
Query:    3 LLERRQRPFLRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESFMTTSSAEA 293
            LL++RQ+PFLRLGVKARGCNGLSYTLNYADEK KFDE+VE+KGV+IL++PKALMHVIGTKMDFVDDKLRSEFVFINPNS+GQCGCGESFMTTS++ A
Sbjct:   36 LLQQRQKPFLRLGVKARGCNGLSYTLNYADEKGKFDELVEEKGVRILVEPKALMHVIGTKMDFVDDKLRSEFVFINPNSQGQCGCGESFMTTSTSSA 132          
BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ISAM3_ARATH (Iron-sulfur assembly protein IscA-like 3, mitochondrial OS=Arabidopsis thaliana GN=At2g36260 PE=3 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 2.369e-37
Identity = 72/92 (78.26%), Postives = 84/92 (91.30%), Query Frame = 3
Query:    3 LLERRQRPFLRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESFMTT 278
            LL+ +Q+PFLRL V+A+GCNGLSY LNYA EK KFDEVVE+KGVKIL+DPKA+MHVIGT+MDFVDDKLRSEFVF+NPN+  +CGCGESF TT
Sbjct:   19 LLQHQQKPFLRLAVEAKGCNGLSYVLNYAQEKGKFDEVVEEKGVKILVDPKAVMHVIGTEMDFVDDKLRSEFVFVNPNAT-KCGCGESFTTT 109          
BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ISA1_YEAST (Iron sulfur assembly protein 1 OS=Saccharomyces cerevisiae GN=ISA1 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 7.149e-26
Identity = 54/90 (60.00%), Postives = 68/90 (75.56%), Query Frame = 3
Query:    3 LLERRQRPFLRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESFM 272
            LL + +   +R+  + RGC+GL+Y L Y  E  KFDEVVE  GVKI+ID KAL  +IG++MD++DDKL S+FVF NPNSKG CGCGESFM
Sbjct:  160 LLAQPEPKLIRVSARNRGCSGLTYDLQYITEPGKFDEVVEQDGVKIVIDSKALFSIIGSEMDWIDDKLASKFVFKNPNSKGTCGCGESFM 249          
BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: Y484_RICPR (Uncharacterized protein RP484 OS=Rickettsia prowazekii GN=RP484 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.080e-25
Identity = 49/91 (53.85%), Postives = 72/91 (79.12%), Query Frame = 3
Query:    3 LLERRQRPF--LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            L+E+R +P   +R+G+K+ GC G +Y + YAD K++FDEVVE+KGV+ILIDPK LM+++G++MD+V+   +S+F F NPN K  CGCG+SF
Sbjct:   18 LIEKRAKPTFGIRVGIKSGGCAGQTYYVEYADNKNQFDEVVEEKGVRILIDPKTLMYILGSEMDYVETNFKSQFTFTNPNEKANCGCGKSF 108          
BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ISCA1_DICDI (Iron-sulfur cluster assembly 1 homolog, mitochondrial OS=Dictyostelium discoideum GN=isca1 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 4.634e-25
Identity = 49/83 (59.04%), Postives = 69/83 (83.13%), Query Frame = 3
Query:   30 LRLGVKARGCNGLSYTLNYADEKSKFDE-VVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESFMT 275
            LRLG+K RGC+G+SYTL++A +K+KFDE VV DK + I++D KAL+ VIGT+MD++++ ++ EF+FINPN+   CGCGESF T
Sbjct:   43 LRLGIKERGCSGMSYTLDFATQKNKFDETVVADKDINIIVDSKALLSVIGTEMDYIEEPIKKEFIFINPNATNTCGCGESFTT 125          
BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ISCA1_CHICK (Iron-sulfur cluster assembly 1 homolog, mitochondrial OS=Gallus gallus GN=ISCA1 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.153e-22
Identity = 47/80 (58.75%), Postives = 60/80 (75.00%), Query Frame = 3
Query:   30 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            +++GV+ RGCNGLSYTL Y   K   DE V   GV++ I+ KA + ++GT+MD+V+DKL SEFVF NPN KG CGCGESF
Sbjct:   48 VKVGVRTRGCNGLSYTLEYTKSKGDSDEEVVQDGVRVFIEKKAQLTLLGTEMDYVEDKLSSEFVFNNPNIKGTCGCGESF 127          
BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ISCA1_MACFA (Iron-sulfur cluster assembly 1 homolog, mitochondrial OS=Macaca fascicularis GN=ISCA1 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 2.811e-22
Identity = 48/89 (53.93%), Postives = 64/89 (71.91%), Query Frame = 3
Query:    3 LLERRQRPFLRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            L ++ +   +++GV+ RGCNGLSYTL Y   K   DE V   GV++ I+ KA + ++GT+MD+V+DKL SEFVF NPN KG CGCGESF
Sbjct:   39 LKDKPEHVGVKVGVRTRGCNGLSYTLEYTKTKGDSDEEVIQDGVRVFIEKKAQLTLLGTEMDYVEDKLSSEFVFNNPNIKGTCGCGESF 127          
BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ISCA1_HUMAN (Iron-sulfur cluster assembly 1 homolog, mitochondrial OS=Homo sapiens GN=ISCA1 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 2.811e-22
Identity = 48/89 (53.93%), Postives = 64/89 (71.91%), Query Frame = 3
Query:    3 LLERRQRPFLRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            L ++ +   +++GV+ RGCNGLSYTL Y   K   DE V   GV++ I+ KA + ++GT+MD+V+DKL SEFVF NPN KG CGCGESF
Sbjct:   39 LKDKPEHVGVKVGVRTRGCNGLSYTLEYTKTKGDSDEEVIQDGVRVFIEKKAQLTLLGTEMDYVEDKLSSEFVFNNPNIKGTCGCGESF 127          
BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ISCA1_BOVIN (Iron-sulfur cluster assembly 1 homolog, mitochondrial OS=Bos taurus GN=ISCA1 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 2.811e-22
Identity = 48/89 (53.93%), Postives = 64/89 (71.91%), Query Frame = 3
Query:    3 LLERRQRPFLRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            L ++ +   +++GV+ RGCNGLSYTL Y   K   DE V   GV++ I+ KA + ++GT+MD+V+DKL SEFVF NPN KG CGCGESF
Sbjct:   39 LKDKPEHVGVKVGVRTRGCNGLSYTLEYTKTKGDSDEEVIQDGVRVFIEKKAQLTLLGTEMDYVEDKLSSEFVFNNPNIKGTCGCGESF 127          
BLAST of CX287805 vs. ExPASy Swiss-Prot
Match: ISCA1_RAT (Iron-sulfur cluster assembly 1 homolog, mitochondrial OS=Rattus norvegicus GN=Isca1 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 3.672e-22
Identity = 48/89 (53.93%), Postives = 64/89 (71.91%), Query Frame = 3
Query:    3 LLERRQRPFLRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 269
            L ++ +   L++GV+ RGCNGLSY+L Y   K   DE V   GV++ I+ KA + ++GT+MD+V+DKL SEFVF NPN KG CGCGESF
Sbjct:   39 LKDKPEHVGLKVGVRTRGCNGLSYSLEYTKTKGDADEEVIQDGVRVFIEKKAQLTLLGTEMDYVEDKLSSEFVFNNPNIKGTCGCGESF 127          
The following BLAST results are available for this feature:
BLAST of CX287805 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 254
Match NameE-valueIdentityDescription
ISAM1_ARATH1.810e-4586.60Iron-sulfur assembly protein IscA-like 1, mitochon... [more]
ISAM3_ARATH2.369e-3778.26Iron-sulfur assembly protein IscA-like 3, mitochon... [more]
ISA1_YEAST7.149e-2660.00Iron sulfur assembly protein 1 OS=Saccharomyces ce... [more]
Y484_RICPR2.080e-2553.85Uncharacterized protein RP484 OS=Rickettsia prowaz... [more]
ISCA1_DICDI4.634e-2559.04Iron-sulfur cluster assembly 1 homolog, mitochondr... [more]
ISCA1_CHICK2.153e-2258.75Iron-sulfur cluster assembly 1 homolog, mitochondr... [more]
ISCA1_MACFA2.811e-2253.93Iron-sulfur cluster assembly 1 homolog, mitochondr... [more]
ISCA1_HUMAN2.811e-2253.93Iron-sulfur cluster assembly 1 homolog, mitochondr... [more]
ISCA1_BOVIN2.811e-2253.93Iron-sulfur cluster assembly 1 homolog, mitochondr... [more]
ISCA1_RAT3.672e-2253.93Iron-sulfur cluster assembly 1 homolog, mitochondr... [more]

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Properties
Property NameValue
Genbank descriptionC01013E06SK Veg1 Citrus clementina cDNA clone C01013E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287805 ID=CX287805; Name=CX287805; organism=Citrus clementina; type=EST; length=485bp
AACTGTTAGAGCGGCGTCAGCGTCCTTTCCTCCGTCTTGGCGTTAAGGCT
CGCGGCTGCAACGGCTTATCCTACACCCTCAATTATGCAGACGAGAAATC
AAAGTTCGATGAGGTGGTTGAGGACAAGGGCGTTAAGATATTAATTGATC
CGAAGGCACTGATGCATGTTATAGGAACCAAGATGGATTTCGTAGATGAC
AAACTCAGATCTGAGTTTGTATTCATCAACCCCAACTCGAAAGGGCAGTG
TGGTTGTGGAGAGTCCTTTATGACAACAAGCAGTGCGGAAGCTGCTAAGC
GAGGTCGTAGTTAATGATTATCATCTTAACTTCATTTTATCTCGTGGCGA
TCTTGCATATTTCATGCTGTCCAAGCAACCTTTTGATTCCCACTTACACT
GTTACTTATGTACGTAGACTATAACATAGATCAGAATTGTGGCTTACGCT
CATGTAAATAATGGTGATAATAGTATGGTAATTCA
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