CX287813

Overview
NameCX287813
Unique NameCX287813
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length328
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX287813_ssr12 microsatellite CX287813_ssr12:12..23. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig8038 contig Ccv1_Contig8038:82..409. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX287813 vs. ExPASy Swiss-Prot
Match: SRS1_ORYSJ (Salt stress root protein RS1 OS=Oryza sativa subsp. japonica GN=Os01g0233000 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.021e-15
Identity = 50/107 (46.73%), Postives = 65/107 (60.75%), Query Frame = 3 
Query:    6 KKAAAAEACKSFDDSXXXXXXXXXXXXXXLQPKVVEIYEASSAEIKTLVKDRKEDG-LKKHSTAVHKLLEELVKIEFPGSKAVSEASSKFGAASVPGPVFFIFEKVS 323
            KKAAAAE  KSF+                L+PKVVE+ E+S  EIK L+KD+K    +KK+  AV K LEEL KI+FPG+K VS+A +K G   +   + FI EKV+
Sbjct:   22 KKAAAAEFLKSFNKEEIGKEIDDKKTE--LEPKVVEVVESSPPEIKALLKDKKTASKIKKNGPAVTKFLEELAKIDFPGAKPVSDAVAKSGTTPLSPAIAFILEKVA 126
[Close]
BLAST of CX287813 vs. ExPASy Swiss-Prot
Match: SRS1_ORYSI (Salt stress root protein RS1 OS=Oryza sativa subsp. indica GN=OsI_001009 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.021e-15
Identity = 50/107 (46.73%), Postives = 65/107 (60.75%), Query Frame = 3 
Query:    6 KKAAAAEACKSFDDSXXXXXXXXXXXXXXLQPKVVEIYEASSAEIKTLVKDRKEDG-LKKHSTAVHKLLEELVKIEFPGSKAVSEASSKFGAASVPGPVFFIFEKVS 323
            KKAAAAE  KSF+                L+PKVVE+ E+S  EIK L+KD+K    +KK+  AV K LEEL KI+FPG+K VS+A +K G   +   + FI EKV+
Sbjct:   22 KKAAAAEFLKSFNKEEIGKEIDDKKTE--LEPKVVEVVESSPPEIKALLKDKKTASKIKKNGPAVTKFLEELAKIDFPGAKPVSDAVAKSGTTPLSPAIAFILEKVA 126
The following BLAST results are available for this feature:
BLAST of CX287813 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
SRS1_ORYSJ1.021e-1546.73Salt stress root protein RS1 OS=Oryza sativa subsp... [more]
SRS1_ORYSI1.021e-1546.73Salt stress root protein RS1 OS=Oryza sativa subsp... [more]
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Properties
Property NameValue
Genbank descriptionC01013F04SK Veg1 Citrus clementina cDNA clone C01013F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287813 ID=CX287813; Name=CX287813; organism=Citrus clementina; type=EST; length=328bp
GAACCAAGAAAGCTGCTGCTGCTGAGGCTTGCAAGTCCTTTGATGATTCA
AAGGAAGAAATCAATAAAGAGTTTGAAGAGAAGAAGCCTGAGCTCCAACC
TAAAGTGGTCGAAATCTATGAAGCTTCTTCAGCTGAAATCAAGACCCTGG
TCAAGGATCGCAAGGAGGATGGACTTAAGAAGCACTCCACTGCTGTGCAC
AAGTTACTTGAAGAACTCGTTAAAATCGAGTTTCCAGGATCAAAAGCAGT
AAGTGAAGCATCGTCAAAGTTTGGGGCAGCCTCTGTTCCGGGGCCAGTTT
TCTTCATATTTGAGAAGGTCTCAACGTT
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