CX287926
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX287926 vs. ExPASy Swiss-Prot
Match: PSAH_BRARA (Photosystem I reaction center subunit VI, chloroplastic OS=Brassica rapa GN=PSAH PE=2 SV=1) HSP 1 Score: 187.193 bits (474), Expect = 2.202e-47 Identity = 94/129 (72.87%), Postives = 105/129 (81.40%), Query Frame = 3 Query: 15 MASLATIAAVQPVT-IKGLGGSSLAGTKLTVKPTRQNLRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXSTLAYFSATASGDILPI 398 MAS ATIAAVQP + +KGLGGSSL G KL +KP+RQ+ +PKS +AGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYN LQSKFFETFAAPFTKR S L Y SA+++GD+LPI Sbjct: 1 MASFATIAAVQPYSAVKGLGGSSLTGAKLFIKPSRQSFKPKSTRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSASSTGDVLPI 129
BLAST of CX287926 vs. ExPASy Swiss-Prot
Match: PSAH2_ARATH (Photosystem I reaction center subunit VI-2, chloroplastic OS=Arabidopsis thaliana GN=PSAH2 PE=2 SV=1) HSP 1 Score: 184.111 bits (466), Expect = 1.864e-46 Identity = 93/129 (72.09%), Postives = 103/129 (79.84%), Query Frame = 3 Query: 15 MASLATIAAVQP-VTIKGLGGSSLAGTKLTVKPTRQNLRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXSTLAYFSATASGDILPI 398 MAS ATIAAVQP +KGLGGSSLAG KL +KP+RQ+ + KS +AGAVVAKYGDKSVYFDLEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKR S L Y SA ++GD+LPI Sbjct: 1 MASFATIAAVQPSAAVKGLGGSSLAGAKLFIKPSRQSFKTKSTRAGAVVAKYGDKSVYFDLEDLGNTTGQWDVYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSANSTGDVLPI 129
BLAST of CX287926 vs. ExPASy Swiss-Prot
Match: PSAH1_ARATH (Photosystem I reaction center subunit VI-1, chloroplastic OS=Arabidopsis thaliana GN=PSAH1 PE=2 SV=1) HSP 1 Score: 182.956 bits (463), Expect = 4.154e-46 Identity = 91/129 (70.54%), Postives = 104/129 (80.62%), Query Frame = 3 Query: 15 MASLATIAAVQP-VTIKGLGGSSLAGTKLTVKPTRQNLRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXSTLAYFSATASGDILPI 398 MASLAT+AAV+P IKGLGGSSLAG KL++KP+R + +PKS +A VVAKYGDKSVYFDLEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKR S L Y SAT++G++LPI Sbjct: 1 MASLATVAAVKPSAAIKGLGGSSLAGAKLSIKPSRLSFKPKSIRANGVVAKYGDKSVYFDLEDLGNTTGQWDVYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSATSTGEVLPI 129
BLAST of CX287926 vs. ExPASy Swiss-Prot
Match: PSAH_SPIOL (Photosystem I reaction center subunit VI, chloroplastic OS=Spinacia oleracea GN=PSAH PE=1 SV=1) HSP 1 Score: 180.644 bits (457), Expect = 2.061e-45 Identity = 88/128 (68.75%), Postives = 101/128 (78.91%), Query Frame = 3 Query: 15 MASLATIAAVQPVTIKGLGGSSLAGTKLTVKPTRQNLRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXSTLAYFSATASGDILPI 398 MASLAT+AAVQP T+KGL GSS+AGTKL +KP RQ+ + + ++GA+VAKYGDKSVYFDLED+ NTTGQWD+YGSDAPSPYNSLQSKFFETFAAPFTKR S L Y SA A D+LPI Sbjct: 1 MASLATLAAVQPTTLKGLAGSSIAGTKLHIKPARQSFKLNNVRSGAIVAKYGDKSVYFDLEDIANTTGQWDVYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSANAPQDVLPI 128
BLAST of CX287926 vs. ExPASy Swiss-Prot
Match: PSAH_MAIZE (Photosystem I reaction center subunit VI, chloroplastic OS=Zea mays GN=PSAH PE=2 SV=1) HSP 1 Score: 159.073 bits (401), Expect = 6.423e-39 Identity = 85/129 (65.89%), Postives = 100/129 (77.52%), Query Frame = 3 Query: 15 MASLATIAAVQPVTIKGLGGSSLAGTKLTV-KPTRQNLRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXSTLAYFSATASGDILPI 398 MASLA ++ V+PV IKGL GSS++G KL V +P+ +++R +A AVVAKYGDKSVYFDL+D+GNTTGQWDLYGSDAPSPYN LQSKFFETFAAPFTKR S LAY SA+AS D+LPI Sbjct: 1 MASLAAVS-VKPVAIKGLAGSSISGRKLAVARPSARSIRRP--RAAAVVAKYGDKSVYFDLDDIGNTTGQWDLYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLLLGGGSLLAYVSASASPDLLPI 126
BLAST of CX287926 vs. ExPASy Swiss-Prot
Match: PSAH_ORYSJ (Photosystem I reaction center subunit VI, chloroplastic OS=Oryza sativa subsp. japonica GN=PSAH PE=2 SV=1) HSP 1 Score: 157.147 bits (396), Expect = 2.441e-38 Identity = 80/126 (63.49%), Postives = 94/126 (74.60%), Query Frame = 3 Query: 24 LATIAAVQPVTIKGLGGSSLAGTKLTVKPTRQNL-RPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXSTLAYFSATASGDILPI 398 +A++ AVQPV +KGL GSS++G KL V+P+ + L R AVVAKYG+KSVYFDLED+GNTTGQWDLYGSDAPSPYN LQSKFFETFA PFTKR S +AY SA+AS D+LPI Sbjct: 1 MASLVAVQPVAVKGLAGSSISGRKLAVRPSPRALCRTTRRPRAAVVAKYGEKSVYFDLEDIGNTTGQWDLYGSDAPSPYNPLQSKFFETFAGPFTKRGLLLKFLLLGGGSLVAYVSASASPDLLPI 126
BLAST of CX287926 vs. ExPASy Swiss-Prot
Match: PSAH_ORYSI (Photosystem I reaction center subunit VI, chloroplastic OS=Oryza sativa subsp. indica GN=PSAH PE=2 SV=1) HSP 1 Score: 157.147 bits (396), Expect = 2.441e-38 Identity = 80/126 (63.49%), Postives = 94/126 (74.60%), Query Frame = 3 Query: 24 LATIAAVQPVTIKGLGGSSLAGTKLTVKPTRQNL-RPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXSTLAYFSATASGDILPI 398 +A++ AVQPV +KGL GSS++G KL V+P+ + L R AVVAKYG+KSVYFDLED+GNTTGQWDLYGSDAPSPYN LQSKFFETFA PFTKR S +AY SA+AS D+LPI Sbjct: 1 MASLVAVQPVAVKGLAGSSISGRKLAVRPSPRALCRTTRRPRAAVVAKYGEKSVYFDLEDIGNTTGQWDLYGSDAPSPYNPLQSKFFETFAGPFTKRGLLLKFLLLGGGSLVAYVSASASPDLLPI 126
BLAST of CX287926 vs. ExPASy Swiss-Prot
Match: PSAH_HORVU (Photosystem I reaction center subunit VI, chloroplastic OS=Hordeum vulgare GN=PSAH PE=1 SV=1) HSP 1 Score: 151.754 bits (382), Expect = 1.025e-36 Identity = 76/127 (59.84%), Postives = 93/127 (73.23%), Query Frame = 3 Query: 24 LATIAAVQPVTIKGLGGSSLAGTKLTVKPTRQNLRPKSFKA--GAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXSTLAYFSATASGDILPI 398 +A++ AVQP +KGL GSS++G KL V+P+ + + +A AVVAKYG+KSVYFDL+D+ NTTGQWDLYGSDAPSPYN LQSKFF TFAAPFTKR S +AY SA+AS D+LPI Sbjct: 1 MASLVAVQPAAVKGLSGSSISGRKLAVRPSSAAVSRSTRRARGAAVVAKYGEKSVYFDLDDIANTTGQWDLYGSDAPSPYNGLQSKFFNTFAAPFTKRGLLLKFLLIGGGSLVAYVSASASPDLLPI 127
BLAST of CX287926 vs. ExPASy Swiss-Prot
Match: PSAH_PEA (Photosystem I reaction center subunit VI (Fragment) OS=Pisum sativum GN=PSAH PE=1 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 3.210e-14 Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = 3 Query: 162 KYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQ 269 KYGDKSVYFDLED+GNTTGQWDLYGSDAPSPY+ LQ Sbjct: 1 KYGDKSVYFDLEDIGNTTGQWDLYGSDAPSPYSXLQ 36 The following BLAST results are available for this feature:
BLAST of CX287926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 9
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX287926 ID=CX287926; Name=CX287926; organism=Citrus clementina; type=EST; length=398bpback to top |