CX287926

Overview
NameCX287926
Unique NameCX287926
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length398
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287926 vs. ExPASy Swiss-Prot
Match: PSAH_BRARA (Photosystem I reaction center subunit VI, chloroplastic OS=Brassica rapa GN=PSAH PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 2.202e-47
Identity = 94/129 (72.87%), Postives = 105/129 (81.40%), Query Frame = 3
Query:   15 MASLATIAAVQPVT-IKGLGGSSLAGTKLTVKPTRQNLRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXSTLAYFSATASGDILPI 398
            MAS ATIAAVQP + +KGLGGSSL G KL +KP+RQ+ +PKS +AGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYN LQSKFFETFAAPFTKR            S L Y SA+++GD+LPI
Sbjct:    1 MASFATIAAVQPYSAVKGLGGSSLTGAKLFIKPSRQSFKPKSTRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSASSTGDVLPI 129          
BLAST of CX287926 vs. ExPASy Swiss-Prot
Match: PSAH2_ARATH (Photosystem I reaction center subunit VI-2, chloroplastic OS=Arabidopsis thaliana GN=PSAH2 PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 1.864e-46
Identity = 93/129 (72.09%), Postives = 103/129 (79.84%), Query Frame = 3
Query:   15 MASLATIAAVQP-VTIKGLGGSSLAGTKLTVKPTRQNLRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXSTLAYFSATASGDILPI 398
            MAS ATIAAVQP   +KGLGGSSLAG KL +KP+RQ+ + KS +AGAVVAKYGDKSVYFDLEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKR            S L Y SA ++GD+LPI
Sbjct:    1 MASFATIAAVQPSAAVKGLGGSSLAGAKLFIKPSRQSFKTKSTRAGAVVAKYGDKSVYFDLEDLGNTTGQWDVYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSANSTGDVLPI 129          
BLAST of CX287926 vs. ExPASy Swiss-Prot
Match: PSAH1_ARATH (Photosystem I reaction center subunit VI-1, chloroplastic OS=Arabidopsis thaliana GN=PSAH1 PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 4.154e-46
Identity = 91/129 (70.54%), Postives = 104/129 (80.62%), Query Frame = 3
Query:   15 MASLATIAAVQP-VTIKGLGGSSLAGTKLTVKPTRQNLRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXSTLAYFSATASGDILPI 398
            MASLAT+AAV+P   IKGLGGSSLAG KL++KP+R + +PKS +A  VVAKYGDKSVYFDLEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKR            S L Y SAT++G++LPI
Sbjct:    1 MASLATVAAVKPSAAIKGLGGSSLAGAKLSIKPSRLSFKPKSIRANGVVAKYGDKSVYFDLEDLGNTTGQWDVYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSATSTGEVLPI 129          
BLAST of CX287926 vs. ExPASy Swiss-Prot
Match: PSAH_SPIOL (Photosystem I reaction center subunit VI, chloroplastic OS=Spinacia oleracea GN=PSAH PE=1 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 2.061e-45
Identity = 88/128 (68.75%), Postives = 101/128 (78.91%), Query Frame = 3
Query:   15 MASLATIAAVQPVTIKGLGGSSLAGTKLTVKPTRQNLRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXSTLAYFSATASGDILPI 398
            MASLAT+AAVQP T+KGL GSS+AGTKL +KP RQ+ +  + ++GA+VAKYGDKSVYFDLED+ NTTGQWD+YGSDAPSPYNSLQSKFFETFAAPFTKR            S L Y SA A  D+LPI
Sbjct:    1 MASLATLAAVQPTTLKGLAGSSIAGTKLHIKPARQSFKLNNVRSGAIVAKYGDKSVYFDLEDIANTTGQWDVYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSANAPQDVLPI 128          
BLAST of CX287926 vs. ExPASy Swiss-Prot
Match: PSAH_MAIZE (Photosystem I reaction center subunit VI, chloroplastic OS=Zea mays GN=PSAH PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 6.423e-39
Identity = 85/129 (65.89%), Postives = 100/129 (77.52%), Query Frame = 3
Query:   15 MASLATIAAVQPVTIKGLGGSSLAGTKLTV-KPTRQNLRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXSTLAYFSATASGDILPI 398
            MASLA ++ V+PV IKGL GSS++G KL V +P+ +++R    +A AVVAKYGDKSVYFDL+D+GNTTGQWDLYGSDAPSPYN LQSKFFETFAAPFTKR            S LAY SA+AS D+LPI
Sbjct:    1 MASLAAVS-VKPVAIKGLAGSSISGRKLAVARPSARSIRRP--RAAAVVAKYGDKSVYFDLDDIGNTTGQWDLYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLLLGGGSLLAYVSASASPDLLPI 126          
BLAST of CX287926 vs. ExPASy Swiss-Prot
Match: PSAH_ORYSJ (Photosystem I reaction center subunit VI, chloroplastic OS=Oryza sativa subsp. japonica GN=PSAH PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 2.441e-38
Identity = 80/126 (63.49%), Postives = 94/126 (74.60%), Query Frame = 3
Query:   24 LATIAAVQPVTIKGLGGSSLAGTKLTVKPTRQNL-RPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXSTLAYFSATASGDILPI 398
            +A++ AVQPV +KGL GSS++G KL V+P+ + L R       AVVAKYG+KSVYFDLED+GNTTGQWDLYGSDAPSPYN LQSKFFETFA PFTKR            S +AY SA+AS D+LPI
Sbjct:    1 MASLVAVQPVAVKGLAGSSISGRKLAVRPSPRALCRTTRRPRAAVVAKYGEKSVYFDLEDIGNTTGQWDLYGSDAPSPYNPLQSKFFETFAGPFTKRGLLLKFLLLGGGSLVAYVSASASPDLLPI 126          
BLAST of CX287926 vs. ExPASy Swiss-Prot
Match: PSAH_ORYSI (Photosystem I reaction center subunit VI, chloroplastic OS=Oryza sativa subsp. indica GN=PSAH PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 2.441e-38
Identity = 80/126 (63.49%), Postives = 94/126 (74.60%), Query Frame = 3
Query:   24 LATIAAVQPVTIKGLGGSSLAGTKLTVKPTRQNL-RPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXSTLAYFSATASGDILPI 398
            +A++ AVQPV +KGL GSS++G KL V+P+ + L R       AVVAKYG+KSVYFDLED+GNTTGQWDLYGSDAPSPYN LQSKFFETFA PFTKR            S +AY SA+AS D+LPI
Sbjct:    1 MASLVAVQPVAVKGLAGSSISGRKLAVRPSPRALCRTTRRPRAAVVAKYGEKSVYFDLEDIGNTTGQWDLYGSDAPSPYNPLQSKFFETFAGPFTKRGLLLKFLLLGGGSLVAYVSASASPDLLPI 126          
BLAST of CX287926 vs. ExPASy Swiss-Prot
Match: PSAH_HORVU (Photosystem I reaction center subunit VI, chloroplastic OS=Hordeum vulgare GN=PSAH PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.025e-36
Identity = 76/127 (59.84%), Postives = 93/127 (73.23%), Query Frame = 3
Query:   24 LATIAAVQPVTIKGLGGSSLAGTKLTVKPTRQNLRPKSFKA--GAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXSTLAYFSATASGDILPI 398
            +A++ AVQP  +KGL GSS++G KL V+P+   +   + +A   AVVAKYG+KSVYFDL+D+ NTTGQWDLYGSDAPSPYN LQSKFF TFAAPFTKR            S +AY SA+AS D+LPI
Sbjct:    1 MASLVAVQPAAVKGLSGSSISGRKLAVRPSSAAVSRSTRRARGAAVVAKYGEKSVYFDLDDIANTTGQWDLYGSDAPSPYNGLQSKFFNTFAAPFTKRGLLLKFLLIGGGSLVAYVSASASPDLLPI 127          
BLAST of CX287926 vs. ExPASy Swiss-Prot
Match: PSAH_PEA (Photosystem I reaction center subunit VI (Fragment) OS=Pisum sativum GN=PSAH PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.210e-14
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = 3
Query:  162 KYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQ 269
            KYGDKSVYFDLED+GNTTGQWDLYGSDAPSPY+ LQ
Sbjct:    1 KYGDKSVYFDLEDIGNTTGQWDLYGSDAPSPYSXLQ 36          
The following BLAST results are available for this feature:
BLAST of CX287926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
PSAH_BRARA2.202e-4772.87Photosystem I reaction center subunit VI, chloropl... [more]
PSAH2_ARATH1.864e-4672.09Photosystem I reaction center subunit VI-2, chloro... [more]
PSAH1_ARATH4.154e-4670.54Photosystem I reaction center subunit VI-1, chloro... [more]
PSAH_SPIOL2.061e-4568.75Photosystem I reaction center subunit VI, chloropl... [more]
PSAH_MAIZE6.423e-3965.89Photosystem I reaction center subunit VI, chloropl... [more]
PSAH_ORYSJ2.441e-3863.49Photosystem I reaction center subunit VI, chloropl... [more]
PSAH_ORYSI2.441e-3863.49Photosystem I reaction center subunit VI, chloropl... [more]
PSAH_HORVU1.025e-3659.84Photosystem I reaction center subunit VI, chloropl... [more]
PSAH_PEA3.210e-1491.67Photosystem I reaction center subunit VI (Fragment... [more]
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Properties
Property NameValue
Genbank descriptionC01014H04SK Veg1 Citrus clementina cDNA clone C01014H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287926 ID=CX287926; Name=CX287926; organism=Citrus clementina; type=EST; length=398bp
AACAAACCAAGGCCATGGCATCTCTTGCAACCATAGCTGCTGTGCAACCA
GTCACCATCAAAGGCCTTGGAGGCAGCTCTCTTGCTGGAACTAAGCTCAC
CGTCAAGCCAACTCGCCAGAATTTGAGACCCAAAAGCTTCAAGGCTGGTG
CTGTAGTGGCTAAGTATGGTGATAAGAGTGTGTACTTTGATTTGGAGGAT
TTGGGCAACACTACGGGCCAGTGGGACTTGTACGGATCAGATGCTCCTTC
ACCGTACAACTCTCTTCAGAGCAAGTTCTTTGAGACATTTGCAGCTCCAT
TCACCAAGAGAGGATTATTGCTCAAGTTCTTGATATTGGGAGGAGGTTCA
ACCCTTGCTTACTTCAGTGCTACAGCTAGTGGTGACATTCTCCCAATC
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