CX287928

Overview
NameCX287928
Unique NameCX287928
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length384
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig808 contig Ccv1_Contig808:5..389. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX287928 vs. ExPASy Swiss-Prot
Match: PSAN_ARATH (Photosystem I reaction center subunit N, chloroplastic OS=Arabidopsis thaliana GN=PSAN PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 2.267e-15
Identity = 55/110 (50.00%), Postives = 66/110 (60.00%), Query Frame = 3 
Query:   66 NSSVLACNYAISGSAGSSELNAKIVSVSTPAVHGHK----MPVIRAQQVDVSKESRGTDGRRXXXXXXXXXXXXXXXXXXXXXXXGVIDEYLERSKANKELNDQKRLATS 383
            NSSVL C+YAI+GS GS ELN K+  V++    G K    MPVI+AQ+V V  +  G++GRR                       GVIDEYLERSK NKELND+KRLATS
Sbjct:    5 NSSVLTCSYAIAGS-GSVELNQKVGLVNSSVGFGQKKQMIMPVIKAQRV-VGDDVDGSNGRRSAMVFLAATLFSTAAVSASANA-GVIDEYLERSKTNKELNDKKRLATS 111
The following BLAST results are available for this feature:
BLAST of CX287928 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PSAN_ARATH2.267e-1550.00Photosystem I reaction center subunit N, chloropla... [more]
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Properties
Property NameValue
Genbank descriptionC01014H07SK Veg1 Citrus clementina cDNA clone C01014H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287928 ID=CX287928; Name=CX287928; organism=Citrus clementina; type=EST; length=384bp
AACTTCGTGAACTTTGTAAAACAAAAAAAAAAATTTGCGCTGCAGCAGGA
GCGATGGCAGCCATGAACTCTAGTGTACTCGCATGCAACTATGCCATTTC
AGGCAGTGCTGGATCATCTGAGCTCAATGCAAAGATTGTTTCGGTTTCAA
CCCCGGCTGTGCATGGCCACAAAATGCCTGTGATCAGAGCTCAACAAGTT
GATGTTTCAAAAGAATCAAGAGGAACTGATGGAAGGAGAGCTGCCATGGC
TCTTCTAGCAGTTACCCTTTTCACCACAGCTACTGCTGCTGCTTCTTCTG
CTAATGCTGGGGTCATCGATGAATACCTTGAGAGAAGCAAAGCCAACAAG
GAATTGAATGACCAGAAGAGATTGGCAACAAGTG
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