CX287934

Overview
NameCX287934
Unique NameCX287934
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length642
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15143 contig Ccv1_Contig15143:489..1134. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX287934 vs. ExPASy Swiss-Prot
Match: UMP1_ARATH (Uncharacterized protein At3g15000, mitochondrial OS=Arabidopsis thaliana GN=At3g15000 PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.788e-31
Identity = 65/101 (64.36%), Postives = 72/101 (71.29%), Query Frame = 3 
Query:    3 KIYSVSTKHYYAFGALVDEETSYKLKELPGVRWVLPDSYLDVKNKDYGGEPFINGQAVPYDPKYHEEWVXXXXXXXXXXXXXXXXXXXXXXXXFERRRENM 305
            KIYSVST+ YYAFGALV E+ S+KLKEL  VRWVLPDSYLDV+NKDYGGEPFI+G+AVPYDPKYHEEW+                        FERRRENM
Sbjct:  137 KIYSVSTRCYYAFGALVSEDLSHKLKELSNVRWVLPDSYLDVRNKDYGGEPFIDGKAVPYDPKYHEEWIRNNARANERNRRNDRPRNNDRSRNFERRRENM 237
[Close]
BLAST of CX287934 vs. ExPASy Swiss-Prot
Match: DAG_ANTMA (DAG protein, chloroplastic OS=Antirrhinum majus GN=DAG PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.239e-15
Identity = 38/67 (56.72%), Postives = 46/67 (68.66%), Query Frame = 3 
Query:    6 IYSVSTKHYYAFGALVDEETSYKLKELPGVRWVLPDSYLDVKNKDYGGEPFINGQAVP-----YDPK 191
            +Y+ ST  Y  F   V EETS K K LPGV WVLPDSY+DVKNKDYGG+ ++NG+ +P     Y PK
Sbjct:  128 MYAFSTTTYTGFQCTVTEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYVNGEIIPCQYPTYQPK 194
The following BLAST results are available for this feature:
BLAST of CX287934 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
UMP1_ARATH2.788e-3164.36Uncharacterized protein At3g15000, mitochondrial O... [more]
DAG_ANTMA6.239e-1556.72DAG protein, chloroplastic OS=Antirrhinum majus GN... [more]
back to top
Properties
Property NameValue
Genbank descriptionC01015A04SK Veg1 Citrus clementina cDNA clone C01015A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287934 ID=CX287934; Name=CX287934; organism=Citrus clementina; type=EST; length=642bp
TGAAGATCTACTCAGTTTCAACTAAGCACTACTACGCATTTGGAGCTCTT
GTGGATGAAGAAACTTCATACAAGCTCAAAGAGTTGCCTGGAGTGCGCTG
GGTTCTTCCTGATTCATATTTGGATGTTAAAAACAAAGATTATGGAGGGG
AACCTTTCATTAATGGGCAGGCTGTTCCTTATGACCCAAAGTATCATGAG
GAATGGGTTAGGAACAATGCTCGTGCTAATGAGCGTAATAGGCGCAATGA
TAGGCCTCGCAGCTACGATAGATCTAGAAACTTTGAAAGAAGAAGGGAGA
ACATGCAGAACCGCAATTTTCAGAACCAGGGTATGCCAAACCCTGCACCT
AATATGAGTGGTATGCCCCCTAACAACGTCCCTTCCAGCAGCAACATGTC
ACCAAATATGGGAAGCATGTCACAGAACAACCTCGGAGGGATGCCGCAGA
ACAACTATGGTGGAACACCACCGCCCAACAACTATGGTGGAATGCCACCA
CCCAACAACTATGCAGGAGTGCCGCCACCACAGAACAACTATGGAGGAGC
GCCGCCACCACAGAACAGCTATGGAGGAGCGCTGCCACCACAGAACAAGT
ATGGAGGGACGCCGCCACCACAGAACAACTATGGAGGGACGC
back to top