CX287946

Overview
NameCX287946
Unique NameCX287946
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length537
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287946 vs. ExPASy Swiss-Prot
Match: HDT2_MAIZE (Histone deacetylase HDT2 OS=Zea mays GN=HDT2 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 4.915e-27
Identity = 60/100 (60.00%), Postives = 75/100 (75.00%), Query Frame = 2
Query:  152 TPKKAESSKKRPVESASKTYVPDKKAKFVTP--QKTEEKKGVSHIATPHPSKKSAKTPANNDQTKQQPHKSGGSFPCKSCNRSFTTEGGLQSHTKAKHGA 445
            TPKK E+ KKR  E+A KT + DKKAK  TP  QKT  KKG +H+ATPHP+K   KTPANND+  ++  KSGGS PCKSC+++F +E  LQ+H+KAKHGA
Sbjct:  205 TPKKPEAGKKRGAENALKTPLSDKKAKVATPPAQKTGGKKGATHVATPHPAK--GKTPANNDKLTEKSPKSGGSVPCKSCSKTFNSEMALQAHSKAKHGA 302          
BLAST of CX287946 vs. ExPASy Swiss-Prot
Match: HDT1_SOLCH (Histone deacetylase HDT1 OS=Solanum chacoense GN=HDT1 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.211e-25
Identity = 58/98 (59.18%), Postives = 69/98 (70.41%), Query Frame = 2
Query:  152 TPKKAESSKKRPVESASKTYVPDKKAKFVTPQKTEEKKGVSHIATPHPSKKSAKTPANNDQTKQQPHKSGGSFPCKSCNRSFTTEGGLQSHTKAKHGA 445
            TPKKAE +K+R  +SA+KT V DKKAK  TPQKT+ KKG  H+ATPHPSK+++KTP           KS GS  CK CNRSF +EG L SH+KAKH A
Sbjct:  181 TPKKAEPAKRRKADSATKTPVTDKKAKLTTPQKTDGKKGGGHVATPHPSKQASKTP-----------KSAGSHHCKPCNRSFGSEGALDSHSKAKHSA 267          
BLAST of CX287946 vs. ExPASy Swiss-Prot
Match: HDT3_ARATH (Histone deacetylase HDT3 OS=Arabidopsis thaliana GN=HDT3 PE=1 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 2.283e-24
Identity = 59/105 (56.19%), Postives = 70/105 (66.67%), Query Frame = 2
Query:  152 TPKKAESSKKRPVE-SASKTYVPDKKAKFVTPQKTEEKKGVSHIATPHPSKKSAKTPANND----QTKQQPHKSGGSFPCKSCNRSFTTEGGLQSHTKAKHGAPA 451
            TPKK E  KKR  E ++SK    +KKAKFVTPQKT+ KK   H+ATPHPSK++ K            +QQ  KS G+F CKSC R+FT+E GLQSHTKAKH A A
Sbjct:  190 TPKKPEEPKKRSAEPNSSKNPASNKKAKFVTPQKTDSKKPHVHVATPHPSKQAGKNSGGGSTGETSKQQQTPKSAGAFGCKSCTRTFTSEMGLQSHTKAKHSAAA 294          
BLAST of CX287946 vs. ExPASy Swiss-Prot
Match: HDT1_SOYBN (Histone deacetylase HDT1 OS=Glycine max GN=HDT1 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 4.306e-23
Identity = 55/95 (57.89%), Postives = 63/95 (66.32%), Query Frame = 2
Query:  158 KKAESSKKRPVESASKTYVPDKKAKFVTPQKTEEKKGVSHIATPHPSKKSAKTPANNDQTKQQPHKSGGSFPCKSCNRSFTTEGGLQSHTKAKHG 442
            KK +  KKRP ESA+KT +  KKAK  TP+KT+ KK V H+ATPHPSKK  KTP   + TK Q   S G   C SC +SFT E GLQ H KAKHG
Sbjct:  203 KKVDQGKKRPNESAAKTPISAKKAKTATPEKTDGKKSV-HVATPHPSKKGGKTP---NSTKGQTPNSAGQLSCASCKKSFTNEAGLQQHKKAKHG 293          
BLAST of CX287946 vs. ExPASy Swiss-Prot
Match: HDT1_MAIZE (Histone deacetylase HDT1 OS=Zea mays GN=HDT1 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 6.874e-21
Identity = 58/105 (55.24%), Postives = 72/105 (68.57%), Query Frame = 2
Query:  152 TPKKAESSKKRPVESAS-KTYVPDKKAKFVTP--QKTEEKKGVS-HIATPHPSKKSAKTPANNDQTKQQPH---KSGGSFPCKSCNRSFTTEGGLQSHTKAKHGA 445
            TPKK E  KKRP ES+  KT + DKKAK  TP  QKT  KKG + H+ATPHP+K   KT  NND++ + P    KSGGS PCK C++SF +E  LQ+H++AK GA
Sbjct:  199 TPKKPEVGKKRPAESSVLKTPLSDKKAKVATPSSQKTGGKKGAAVHVATPHPAK--GKTIVNNDKSVKSPKSAPKSGGSVPCKPCSKSFISETALQAHSRAKMGA 301          
BLAST of CX287946 vs. ExPASy Swiss-Prot
Match: HDT3_MAIZE (Histone deacetylase HDT3 OS=Zea mays GN=HDT3 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.193e-18
Identity = 54/102 (52.94%), Postives = 68/102 (66.67%), Query Frame = 2
Query:  152 TPKKAESSKKRPVESAS-KTYVPDKKAKFVTP--QKTEEKKGVS-HIATPHPSKKSAKTPANNDQTKQQPHKSGGS-FPCKSCNRSFTTEGGLQSHTKAKHG 442
            TPKK E  KKR  ES+  KT + DKKAK  TP  QKT  KKG + H+ATPHP+K   KT  NND++ + P  +  S  PCKSC++SF +E   Q+H+KAKHG
Sbjct:  199 TPKKPEVGKKRAAESSVLKTPLSDKKAKVATPSSQKTGGKKGAAVHVATPHPAK--GKTIVNNDKSVKSPKSAPKSGVPCKSCSKSFISETAPQAHSKAKHG 298          
BLAST of CX287946 vs. ExPASy Swiss-Prot
Match: HDT2_ARATH (Histone deacetylase HDT2 OS=Arabidopsis thaliana GN=HDT2 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.535e-12
Identity = 42/77 (54.55%), Postives = 49/77 (63.64%), Query Frame = 2
Query:  152 TPKKAES-SKKRPVESASKTYVPDKKAKFV-----TPQKTEEKKGVSHIATPHPSKKSAKTPANNDQTKQQPHKSGG 364
            TPKK E  +KKRP ES SKT V  KKAK       TPQKTEEKK   H ATPHP+KK  K+P N +Q+ +   +S G
Sbjct:  199 TPKKPEPINKKRPNESVSKTPVSGKKAKPAAAPASTPQKTEEKKKGGHTATPHPAKKGGKSPVNANQSPKSGGQSSG 275          
The following BLAST results are available for this feature:
BLAST of CX287946 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
HDT2_MAIZE4.915e-2760.00Histone deacetylase HDT2 OS=Zea mays GN=HDT2 PE=1 ... [more]
HDT1_SOLCH1.211e-2559.18Histone deacetylase HDT1 OS=Solanum chacoense GN=H... [more]
HDT3_ARATH2.283e-2456.19Histone deacetylase HDT3 OS=Arabidopsis thaliana G... [more]
HDT1_SOYBN4.306e-2357.89Histone deacetylase HDT1 OS=Glycine max GN=HDT1 PE... [more]
HDT1_MAIZE6.874e-2155.24Histone deacetylase HDT1 OS=Zea mays GN=HDT1 PE=1 ... [more]
HDT3_MAIZE3.193e-1852.94Histone deacetylase HDT3 OS=Zea mays GN=HDT3 PE=2 ... [more]
HDT2_ARATH1.535e-1254.55Histone deacetylase HDT2 OS=Arabidopsis thaliana G... [more]
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Properties
Property NameValue
Genbank descriptionC01015B04SK Veg1 Citrus clementina cDNA clone C01015B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287946 ID=CX287946; Name=CX287946; organism=Citrus clementina; type=EST; length=537bp
TGATGATGATGAGACCAGTGATGATGAGAATCCAAATCTCGTTAATCGTG
ATGGTAGTAGTGATGAGAGTAGTGGAGAGCTTGATGAAAGCGATGACGAC
GAAGATGATGAAGGCACTGATGAGAGCGAAAGTGATGATGAAGATGAGGA
GACCCCAAAGAAGGCTGAATCAAGCAAGAAGAGACCTGTGGAGTCTGCTT
CAAAAACCTATGTTCCTGACAAGAAGGCTAAATTTGTCACACCTCAAAAG
ACAGAGGAGAAGAAAGGGGTCAGTCACATTGCAACTCCACACCCCTCAAA
GAAGTCTGCTAAGACTCCTGCTAACAATGACCAGACAAAGCAGCAGCCTC
ATAAATCAGGCGGTTCATTTCCCTGCAAATCATGCAATAGGTCATTTACC
ACTGAAGGTGGTTTGCAATCTCATACAAAAGCCAAGCACGGTGCTCCAGC
ATGAAAGATGGCGTTGAAACGGCCTTTTGTGCTTAGGTTACCTTACTGCT
TCTCAGGGAGGAATTTCGGGAAAAAAAAAAAAAAAAA
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