CX287946
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX287946 vs. ExPASy Swiss-Prot
Match: HDT2_MAIZE (Histone deacetylase HDT2 OS=Zea mays GN=HDT2 PE=1 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 4.915e-27 Identity = 60/100 (60.00%), Postives = 75/100 (75.00%), Query Frame = 2 Query: 152 TPKKAESSKKRPVESASKTYVPDKKAKFVTP--QKTEEKKGVSHIATPHPSKKSAKTPANNDQTKQQPHKSGGSFPCKSCNRSFTTEGGLQSHTKAKHGA 445 TPKK E+ KKR E+A KT + DKKAK TP QKT KKG +H+ATPHP+K KTPANND+ ++ KSGGS PCKSC+++F +E LQ+H+KAKHGA Sbjct: 205 TPKKPEAGKKRGAENALKTPLSDKKAKVATPPAQKTGGKKGATHVATPHPAK--GKTPANNDKLTEKSPKSGGSVPCKSCSKTFNSEMALQAHSKAKHGA 302
BLAST of CX287946 vs. ExPASy Swiss-Prot
Match: HDT1_SOLCH (Histone deacetylase HDT1 OS=Solanum chacoense GN=HDT1 PE=2 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 1.211e-25 Identity = 58/98 (59.18%), Postives = 69/98 (70.41%), Query Frame = 2 Query: 152 TPKKAESSKKRPVESASKTYVPDKKAKFVTPQKTEEKKGVSHIATPHPSKKSAKTPANNDQTKQQPHKSGGSFPCKSCNRSFTTEGGLQSHTKAKHGA 445 TPKKAE +K+R +SA+KT V DKKAK TPQKT+ KKG H+ATPHPSK+++KTP KS GS CK CNRSF +EG L SH+KAKH A Sbjct: 181 TPKKAEPAKRRKADSATKTPVTDKKAKLTTPQKTDGKKGGGHVATPHPSKQASKTP-----------KSAGSHHCKPCNRSFGSEGALDSHSKAKHSA 267
BLAST of CX287946 vs. ExPASy Swiss-Prot
Match: HDT3_ARATH (Histone deacetylase HDT3 OS=Arabidopsis thaliana GN=HDT3 PE=1 SV=2) HSP 1 Score: 111.694 bits (278), Expect = 2.283e-24 Identity = 59/105 (56.19%), Postives = 70/105 (66.67%), Query Frame = 2 Query: 152 TPKKAESSKKRPVE-SASKTYVPDKKAKFVTPQKTEEKKGVSHIATPHPSKKSAKTPANND----QTKQQPHKSGGSFPCKSCNRSFTTEGGLQSHTKAKHGAPA 451 TPKK E KKR E ++SK +KKAKFVTPQKT+ KK H+ATPHPSK++ K +QQ KS G+F CKSC R+FT+E GLQSHTKAKH A A Sbjct: 190 TPKKPEEPKKRSAEPNSSKNPASNKKAKFVTPQKTDSKKPHVHVATPHPSKQAGKNSGGGSTGETSKQQQTPKSAGAFGCKSCTRTFTSEMGLQSHTKAKHSAAA 294
BLAST of CX287946 vs. ExPASy Swiss-Prot
Match: HDT1_SOYBN (Histone deacetylase HDT1 OS=Glycine max GN=HDT1 PE=2 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 4.306e-23 Identity = 55/95 (57.89%), Postives = 63/95 (66.32%), Query Frame = 2 Query: 158 KKAESSKKRPVESASKTYVPDKKAKFVTPQKTEEKKGVSHIATPHPSKKSAKTPANNDQTKQQPHKSGGSFPCKSCNRSFTTEGGLQSHTKAKHG 442 KK + KKRP ESA+KT + KKAK TP+KT+ KK V H+ATPHPSKK KTP + TK Q S G C SC +SFT E GLQ H KAKHG Sbjct: 203 KKVDQGKKRPNESAAKTPISAKKAKTATPEKTDGKKSV-HVATPHPSKKGGKTP---NSTKGQTPNSAGQLSCASCKKSFTNEAGLQQHKKAKHG 293
BLAST of CX287946 vs. ExPASy Swiss-Prot
Match: HDT1_MAIZE (Histone deacetylase HDT1 OS=Zea mays GN=HDT1 PE=1 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 6.874e-21 Identity = 58/105 (55.24%), Postives = 72/105 (68.57%), Query Frame = 2 Query: 152 TPKKAESSKKRPVESAS-KTYVPDKKAKFVTP--QKTEEKKGVS-HIATPHPSKKSAKTPANNDQTKQQPH---KSGGSFPCKSCNRSFTTEGGLQSHTKAKHGA 445 TPKK E KKRP ES+ KT + DKKAK TP QKT KKG + H+ATPHP+K KT NND++ + P KSGGS PCK C++SF +E LQ+H++AK GA Sbjct: 199 TPKKPEVGKKRPAESSVLKTPLSDKKAKVATPSSQKTGGKKGAAVHVATPHPAK--GKTIVNNDKSVKSPKSAPKSGGSVPCKPCSKSFISETALQAHSRAKMGA 301
BLAST of CX287946 vs. ExPASy Swiss-Prot
Match: HDT3_MAIZE (Histone deacetylase HDT3 OS=Zea mays GN=HDT3 PE=2 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 3.193e-18 Identity = 54/102 (52.94%), Postives = 68/102 (66.67%), Query Frame = 2 Query: 152 TPKKAESSKKRPVESAS-KTYVPDKKAKFVTP--QKTEEKKGVS-HIATPHPSKKSAKTPANNDQTKQQPHKSGGS-FPCKSCNRSFTTEGGLQSHTKAKHG 442 TPKK E KKR ES+ KT + DKKAK TP QKT KKG + H+ATPHP+K KT NND++ + P + S PCKSC++SF +E Q+H+KAKHG Sbjct: 199 TPKKPEVGKKRAAESSVLKTPLSDKKAKVATPSSQKTGGKKGAAVHVATPHPAK--GKTIVNNDKSVKSPKSAPKSGVPCKSCSKSFISETAPQAHSKAKHG 298
BLAST of CX287946 vs. ExPASy Swiss-Prot
Match: HDT2_ARATH (Histone deacetylase HDT2 OS=Arabidopsis thaliana GN=HDT2 PE=1 SV=2) HSP 1 Score: 72.4034 bits (176), Expect = 1.535e-12 Identity = 42/77 (54.55%), Postives = 49/77 (63.64%), Query Frame = 2 Query: 152 TPKKAES-SKKRPVESASKTYVPDKKAKFV-----TPQKTEEKKGVSHIATPHPSKKSAKTPANNDQTKQQPHKSGG 364 TPKK E +KKRP ES SKT V KKAK TPQKTEEKK H ATPHP+KK K+P N +Q+ + +S G Sbjct: 199 TPKKPEPINKKRPNESVSKTPVSGKKAKPAAAPASTPQKTEEKKKGGHTATPHPAKKGGKSPVNANQSPKSGGQSSG 275 The following BLAST results are available for this feature:
BLAST of CX287946 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 7
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX287946 ID=CX287946; Name=CX287946; organism=Citrus clementina; type=EST; length=537bpback to top |