CX287954

Overview
NameCX287954
Unique NameCX287954
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length751
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig340 contig Ccv1_Contig340:93..843. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX287954 vs. ExPASy Swiss-Prot
Match: DEGP1_ARATH (Protease Do-like 1, chloroplastic OS=Arabidopsis thaliana GN=DEGP1 PE=1 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 1.006e-28
Identity = 63/72 (87.50%), Postives = 65/72 (90.28%), Query Frame = 3 
Query:    3 KAGLLSTKRDAYGRLILGDIITSVNGKKVSNGSDLYRILDQCKVGDEVIVEVLRGDQKEKIPVKLEPKPDET 218
            KAGL STKRD YGRL+LGDIITSVNG KVSNGSDLYRILDQCKVGDEV VEVLRGD KEKI V LEPKPDE+
Sbjct:  368 KAGLQSTKRDGYGRLVLGDIITSVNGTKVSNGSDLYRILDQCKVGDEVTVEVLRGDHKEKISVTLEPKPDES 439
The following BLAST results are available for this feature:
BLAST of CX287954 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
DEGP1_ARATH1.006e-2887.50Protease Do-like 1, chloroplastic OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionC01015B12SK Veg1 Citrus clementina cDNA clone C01015B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287954 ID=CX287954; Name=CX287954; organism=Citrus clementina; type=EST; length=751bp
GCAAAGCAGGCTTGCTATCAACCAAACGCGATGCCTATGGCAGACTTATT
TTGGGTGACATCATAACATCTGTGAATGGAAAAAAGGTCTCCAATGGCAG
CGACTTGTACAGAATTCTTGACCAATGTAAAGTTGGAGATGAGGTGATTG
TTGAGGTATTGCGCGGAGATCAGAAGGAGAAGATTCCGGTAAAACTTGAA
CCAAAACCAGATGAGACTTAATATGCCAAAAGGTTGGGTTTGTATATTTA
AGTGTAGCACATATACCATAAAAATGCCATTGTAGTTGTGCATCAATTGT
TTTACCAAAACTGGTCTTTTCTTGTACATATTTCAGCAATTGTAATATCA
AGATTCCACTAAAAAAAAAAAAAAAAAACTCGTCGCACGAGGAAGAAAGC
CATGGACAAAAATGATGAAGTAGCAGATGAGTTGTCCCAGAAGAAGTTGG
CTAGCTCTGGATAGATACAAGTAATAGTCCTACTACTAACTCATGGAATT
TTGTCTTGAGCAAATTAGTGCTGCCTGAAAGTTTTGTGCACTTTCTGAAA
CAACTAGCGGCATTTGCTTCCAATTTTTATCTGTCGACAAGTCTTCGGTC
TGCCTTTCGTTTTGACATGGTGCTTTTCTTTCTTGCGGAACTTTATTCGG
TCGCAAGGCTCAAATACTTTATTGATGAATAGTCCAAATACCTTGCTGGT
TGAAGTTTTGTATTGTGCATTCAAAATGACATTGCTGTACGTTTTGACAT
T
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