CX287959

Overview
NameCX287959
Unique NameCX287959
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9824 contig Ccv1_Contig9824:416..1155. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287959 vs. ExPASy Swiss-Prot
Match: RH8_ARATH (DEAD-box ATP-dependent RNA helicase 8 OS=Arabidopsis thaliana GN=RH8 PE=2 SV=1)

HSP 1 Score: 388.652 bits (997), Expect = 1.813e-107
Identity = 186/194 (95.88%), Postives = 192/194 (98.97%), Query Frame = 2
Query:    2 ATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCR 583
            ATFPVTVKDFKD++L  PYVINLMDELTLKGITQ+YAFVEERQK+HCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKN+ETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYC+
Sbjct:  312 ATFPVTVKDFKDRFLTNPYVINLMDELTLKGITQFYAFVEERQKIHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCQ 505          
BLAST of CX287959 vs. ExPASy Swiss-Prot
Match: RH8_ORYSJ (DEAD-box ATP-dependent RNA helicase 8 OS=Oryza sativa subsp. japonica GN=Os02g0641800 PE=2 SV=2)

HSP 1 Score: 384.415 bits (986), Expect = 3.419e-106
Identity = 186/194 (95.88%), Postives = 190/194 (97.94%), Query Frame = 2
Query:    2 ATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCR 583
            ATFPVTVK+FKDKYL KPYVINLMDELTLKGITQ+YAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPK +ETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIK IPP IDQAIYC+
Sbjct:  315 ATFPVTVKEFKDKYLPKPYVINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKTAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKPIPPQIDQAIYCQ 508          
BLAST of CX287959 vs. ExPASy Swiss-Prot
Match: RH6_ORYSJ (DEAD-box ATP-dependent RNA helicase 6 OS=Oryza sativa subsp. japonica GN=Os04g0533000 PE=2 SV=1)

HSP 1 Score: 383.259 bits (983), Expect = 7.617e-106
Identity = 185/194 (95.36%), Postives = 191/194 (98.45%), Query Frame = 2
Query:    2 ATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCR 583
            ATFPVTVK+FKDKYL KPYVINLMDELTLKGITQ+YAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPK++ETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIK IPP ID+AIYC+
Sbjct:  305 ATFPVTVKEFKDKYLPKPYVINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKSAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKPIPPQIDRAIYCQ 498          
BLAST of CX287959 vs. ExPASy Swiss-Prot
Match: RH12_ORYSJ (DEAD-box ATP-dependent RNA helicase 12 OS=Oryza sativa subsp. japonica GN=Os10g0503700 PE=2 SV=2)

HSP 1 Score: 382.874 bits (982), Expect = 9.949e-106
Identity = 185/194 (95.36%), Postives = 189/194 (97.42%), Query Frame = 2
Query:    2 ATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCR 583
            ATFPVTVKDFK+KYL +PYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPK SETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIK IPP ID A+YC+
Sbjct:  328 ATFPVTVKDFKEKYLPRPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKTSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKTIPPQIDLAVYCQ 521          
BLAST of CX287959 vs. ExPASy Swiss-Prot
Match: RH6_ARATH (DEAD-box ATP-dependent RNA helicase 6 OS=Arabidopsis thaliana GN=RH6 PE=2 SV=2)

HSP 1 Score: 365.155 bits (936), Expect = 2.147e-100
Identity = 173/194 (89.18%), Postives = 186/194 (95.88%), Query Frame = 2
Query:    2 ATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCR 583
            ATFPVTVK FKD+YL+KPY+INLMD+LTL G+TQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKM+QDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFP+ SE+YLHRVGRSGRFGHLGLAVNL+TYEDRF +Y+ EQELGTEIK IP  ID+AIYC+
Sbjct:  335 ATFPVTVKSFKDRYLKKPYIINLMDQLTLMGVTQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLVTYEDRFKMYQTEQELGTEIKPIPSLIDKAIYCQ 528          
BLAST of CX287959 vs. ExPASy Swiss-Prot
Match: RH12_ARATH (DEAD-box ATP-dependent RNA helicase 12 OS=Arabidopsis thaliana GN=RH12 PE=2 SV=1)

HSP 1 Score: 364.385 bits (934), Expect = 3.662e-100
Identity = 173/194 (89.18%), Postives = 187/194 (96.39%), Query Frame = 2
Query:    2 ATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCR 583
            ATFPVTVK FKD++L+KPYVINLMD+LTL G+TQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKM+QDHRNRVFH+FRNGACRNLVCTDLFTRGIDIQAVNVVINFDFP+ SE+YLHRVGRSGRFGHLGLAVNL+TYEDRF +Y+ EQELGTEIK IP +IDQAIYC+
Sbjct:  305 ATFPVTVKAFKDRHLRKPYVINLMDQLTLMGVTQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHEFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLVTYEDRFKMYQTEQELGTEIKPIPSNIDQAIYCQ 498          
BLAST of CX287959 vs. ExPASy Swiss-Prot
Match: DDX6_DICDI (Probable ATP-dependent RNA helicase ddx6 OS=Dictyostelium discoideum GN=ddx6 PE=3 SV=1)

HSP 1 Score: 348.591 bits (893), Expect = 2.079e-95
Identity = 166/192 (86.46%), Postives = 183/192 (95.31%), Query Frame = 2
Query:    2 ATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIY 577
            ATFPVTVK FK+ YLQ+ + INLM+ELTLKG+TQYYAFVEERQK+HCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCF+IHAKM+Q HRNRVFHDFRNGACRNLV +DLFTRGIDIQ VNVVINFDFPK+SETYLHR+GRSGRFGHLGLA+NLITYEDRF+LY+IEQELGTEIK IPP ID+++Y
Sbjct:  230 ATFPVTVKSFKEHYLQQAFEINLMEELTLKGVTQYYAFVEERQKIHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFFIHAKMVQAHRNRVFHDFRNGACRNLVSSDLFTRGIDIQDVNVVINFDFPKHSETYLHRIGRSGRFGHLGLAINLITYEDRFSLYKIEQELGTEIKPIPPVIDKSLY 421          
BLAST of CX287959 vs. ExPASy Swiss-Prot
Match: DHH1_ASPNC (ATP-dependent RNA helicase dhh1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=dhh1 PE=3 SV=1)

HSP 1 Score: 344.739 bits (883), Expect = 3.002e-94
Identity = 162/192 (84.38%), Postives = 179/192 (93.23%), Query Frame = 2
Query:    2 ATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIY 577
            ATFP+ VK FKDK+++ PY INLMDELTL+GITQYYAFVEE+QKVHCLNTLFSKLQINQSIIFCNS NRVELLAKKITELGYSCFY HA+MLQ HRNRVFHDFRNG CRNLVC+DL TRGIDIQAVNVVINFDFPKN+ETYLHR+GRSGRFGHLGLA+NLI +EDRFNLY+IEQELGTEI+ IP +ID+ +Y
Sbjct:  228 ATFPLIVKSFKDKHMRNPYEINLMDELTLRGITQYYAFVEEKQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQQHRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWEDRFNLYKIEQELGTEIQPIPQNIDKKLY 419          
BLAST of CX287959 vs. ExPASy Swiss-Prot
Match: DHH1_ASPCL (ATP-dependent RNA helicase dhh1 OS=Aspergillus clavatus GN=dhh1 PE=3 SV=1)

HSP 1 Score: 344.739 bits (883), Expect = 3.002e-94
Identity = 162/192 (84.38%), Postives = 179/192 (93.23%), Query Frame = 2
Query:    2 ATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIY 577
            ATFP+ VK FKDK+++ PY INLMDELTL+GITQYYAFVEE+QKVHCLNTLFSKLQINQSIIFCNS NRVELLAKKITELGYSCFY HA+MLQ HRNRVFHDFRNG CRNLVC+DL TRGIDIQAVNVVINFDFPKN+ETYLHR+GRSGRFGHLGLA+NLI +EDRFNLY+IEQELGTEI+ IP +ID+ +Y
Sbjct:  228 ATFPLIVKSFKDKHMRNPYEINLMDELTLRGITQYYAFVEEKQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQQHRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWEDRFNLYKIEQELGTEIQPIPQNIDKKLY 419          
BLAST of CX287959 vs. ExPASy Swiss-Prot
Match: DHH1_NEOFI (ATP-dependent RNA helicase dhh1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=dhh1 PE=3 SV=1)

HSP 1 Score: 343.584 bits (880), Expect = 6.689e-94
Identity = 161/192 (83.85%), Postives = 179/192 (93.23%), Query Frame = 2
Query:    2 ATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIY 577
            ATFP+ VK FKDK+++ PY INLMDELTL+GITQYYAFVEE+QKVHCLNTLFSKLQINQSIIFCNS NRVELLAKKITELGYSCFY HA+MLQ HRNRVFHDFRNG CRNLVC+DL TRGIDIQAVNVVINFDFPKN+ETYLHR+GRSGRFGHLGLA+NLI ++DRFNLY+IEQELGTEI+ IP +ID+ +Y
Sbjct:  228 ATFPLIVKSFKDKHMRNPYEINLMDELTLRGITQYYAFVEEKQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQQHRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWDDRFNLYKIEQELGTEIQPIPQNIDKKLY 419          
The following BLAST results are available for this feature:
BLAST of CX287959 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RH8_ARATH1.813e-10795.88DEAD-box ATP-dependent RNA helicase 8 OS=Arabidops... [more]
RH8_ORYSJ3.419e-10695.88DEAD-box ATP-dependent RNA helicase 8 OS=Oryza sat... [more]
RH6_ORYSJ7.617e-10695.36DEAD-box ATP-dependent RNA helicase 6 OS=Oryza sat... [more]
RH12_ORYSJ9.949e-10695.36DEAD-box ATP-dependent RNA helicase 12 OS=Oryza sa... [more]
RH6_ARATH2.147e-10089.18DEAD-box ATP-dependent RNA helicase 6 OS=Arabidops... [more]
RH12_ARATH3.662e-10089.18DEAD-box ATP-dependent RNA helicase 12 OS=Arabidop... [more]
DDX6_DICDI2.079e-9586.46Probable ATP-dependent RNA helicase ddx6 OS=Dictyo... [more]
DHH1_ASPNC3.002e-9484.38ATP-dependent RNA helicase dhh1 OS=Aspergillus nig... [more]
DHH1_ASPCL3.002e-9484.38ATP-dependent RNA helicase dhh1 OS=Aspergillus cla... [more]
DHH1_NEOFI6.689e-9483.85ATP-dependent RNA helicase dhh1 OS=Neosartorya fis... [more]

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Properties
Property NameValue
Genbank descriptionC01015C05SK Veg1 Citrus clementina cDNA clone C01015C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287959 ID=CX287959; Name=CX287959; organism=Citrus clementina; type=EST; length=740bp
AGCTACTTTCCCTGTTACCGTCAAGGACTTTAAAGATAAATACCTACAAA
AACCATATGTTATTAATCTGATGGATGAGCTTACTCTCAAGGGAATTACC
CAATACTATGCTTTTGTTGAAGAAAGGCAGAAAGTCCACTGCCTCAACAC
ACTTTTCTCTAAGTTGCAAATTAATCAATCTATCATTTTCTGCAATTCGG
TGAATCGGGTTGAACTCCTTGCCAAGAAAATTACAGAACTTGGGTACTCT
TGTTTTTATATCCATGCAAAGATGCTGCAAGACCATCGCAACAGAGTATT
TCATGACTTCCGCAATGGTGCATGCAGGAATCTTGTTTGTACTGACCTAT
TTACGAGGGGTATAGACATTCAAGCAGTGAATGTTGTCATTAACTTTGAT
TTTCCTAAGAACTCGGAGACATATCTGCACAGAGTTGGTCGATCTGGAAG
GTTTGGACACCTTGGATTAGCTGTGAATTTGATTACTTACGAGGACCGCT
TCAACTTGTATAGGATTGAGCAAGAACTCGGGACTGAAATTAAGCAGATA
CCTCCGCATATTGATCAGGCAATTTACTGCAGGTGATTTATGGCCGGTAT
CTTGCTATATAGCCAATGGTGGTAGCAATGGATTCCTGAGGCTGTTGATT
CAAGGCACTTGGCTCTGCAGCTGAGGAAGCATTTTATGAACTGGTTATGT
GTGTTGGTGGAAGACTTGCAGCTGGTGCTGTGCGATTACC
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