CX287960

Overview
NameCX287960
Unique NameCX287960
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287960 vs. ExPASy Swiss-Prot
Match: MCFW_DICDI (Mitochondrial substrate carrier family protein W OS=Dictyostelium discoideum GN=mcfW PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.846e-24
Identity = 55/124 (44.35%), Postives = 80/124 (64.52%), Query Frame = 1
Query:    4 SARGVSHVAIQFPAYERIKHYMAKKDDTDVDKLNPGSVMIASSIAKVLASVMTYPHEVVRSRLQEQGQNRKVDVQYAGVVDCVKKVFQKEGFPGFYRGCATNLLRTTPSAVITFTSYEIIQRFL 375
            S  GV HV +QFP YE+ K  + +K+     +L    +MIASS++K++ASV+ YPHEV+R+R Q+   +         ++   K++ ++EG+ G YRG   NLLR TPS VITFTSYE I++FL
Sbjct:  201 SLLGVLHVGVQFPLYEKFKSILKEKNKNK--ELGIVEIMIASSVSKIIASVVAYPHEVLRARSQDSSPDSPNRTYRGNIIQMFKQIVREEGWRGLYRGMGVNLLRVTPSCVITFTSYEYIKKFL 322          
BLAST of CX287960 vs. ExPASy Swiss-Prot
Match: YEA6_YEAST (Probable mitochondrial carrier YEL006W OS=Saccharomyces cerevisiae GN=YEL006W PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.046e-18
Identity = 50/125 (40.00%), Postives = 81/125 (64.80%), Query Frame = 1
Query:   13 GVSHVAIQFPAYERIK---HYMAKKD-DTDVDKLNPGSVMIASSIAKVLASVMTYPHEVVRSRLQEQGQNRKVDVQYAGVVDCVKKVFQKEGFPGFYRGCATNLLRTTPSAVITFTSYEIIQRFL 375
            G+ +VAIQFP YE +K    Y    D  TDV   N   +++AS ++K++AS +TYPHE++R+R+Q +        ++  ++  +K  +++EGF GFY G ATNL+RT P+AV+T  S+E  +++L
Sbjct:  208 GMLNVAIQFPLYENLKIRFGYSESTDVSTDVTSSNFQKLILASMLSKMVASTVTYPHEILRTRMQLKSDLPNTVQRH--LLPLIKITYRQEGFAGFYSGFATNLVRTVPAAVVTLVSFEYSKKYL 330          
BLAST of CX287960 vs. ExPASy Swiss-Prot
Match: MFTC_MOUSE (Mitochondrial folate transporter/carrier OS=Mus musculus GN=Slc25a32 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.366e-18
Identity = 50/122 (40.98%), Postives = 72/122 (59.02%), Query Frame = 1
Query:   13 GVSHVAIQFPAYERIK-HYMAKKDDTDVDKLNPGSVMIASSIAKVLASVMTYPHEVVRSRLQEQGQNRKVDVQYAGVVDCVKKVFQKEGFPGFYRGCATNLLRTTPSAVITFTSYEIIQRFL 375
            G SH A+QF AYE +K  Y    +     +L+    +  ++++K+ A   TYP++VVR+RLQ+Q       V Y GV D + K ++KEG  GFY+G A NL+R TP+  ITF  YE +  FL
Sbjct:  192 GTSHGALQFMAYELLKLKYNKHINRLPEAQLSTAEYISVAALSKIFAVAATYPYQVVRARLQDQ------HVSYGGVTDVITKTWRKEGIGGFYKGIAPNLIRVTPACCITFVVYENVSHFL 307          
BLAST of CX287960 vs. ExPASy Swiss-Prot
Match: MFTC_MACFA (Mitochondrial folate transporter/carrier OS=Macaca fascicularis GN=SLC25A32 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.783e-18
Identity = 50/123 (40.65%), Postives = 75/123 (60.98%), Query Frame = 1
Query:   13 GVSHVAIQFPAYERIK-HYMAKKDDTDVDKLNPGSVMIASSIAKVLASVMTYPHEVVRSRLQEQGQNRKVDVQYAGVVDCVKKVFQKEGFPGFYRGCATNLLRTTPSAVITFTSYEIIQRFLL 378
            G SH A+QF AYE +K  Y    +     +L+    +  ++++K+ A   TYP++VVR+RLQ+Q       + Y+GV+D + K ++KEG  GFY+G A NL+R TP+  ITF  YE +  FLL
Sbjct:  192 GTSHGALQFMAYELLKLKYNQHINRLPEAQLSTVEYISVAALSKIFAVAATYPYQVVRARLQDQ------HMFYSGVIDVITKTWRKEGIGGFYKGIAPNLIRVTPACCITFVVYENVSHFLL 308          
BLAST of CX287960 vs. ExPASy Swiss-Prot
Match: MFTC_HUMAN (Mitochondrial folate transporter/carrier OS=Homo sapiens GN=SLC25A32 PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.329e-18
Identity = 50/123 (40.65%), Postives = 75/123 (60.98%), Query Frame = 1
Query:   13 GVSHVAIQFPAYERIK-HYMAKKDDTDVDKLNPGSVMIASSIAKVLASVMTYPHEVVRSRLQEQGQNRKVDVQYAGVVDCVKKVFQKEGFPGFYRGCATNLLRTTPSAVITFTSYEIIQRFLL 378
            G SH A+QF AYE +K  Y    +     +L+    +  ++++K+ A   TYP++VVR+RLQ+Q       + Y+GV+D + K ++KEG  GFY+G A NL+R TP+  ITF  YE +  FLL
Sbjct:  192 GTSHGALQFMAYELLKLKYNQHINRLPEAQLSTVEYISVAALSKIFAVAATYPYQVVRARLQDQ------HMFYSGVIDVITKTWRKEGVGGFYKGIAPNLIRVTPACCITFVVYENVSHFLL 308          
BLAST of CX287960 vs. ExPASy Swiss-Prot
Match: MCFM_DICDI (Mitochondrial substrate carrier family protein M OS=Dictyostelium discoideum GN=mcfM PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.363e-17
Identity = 47/118 (39.83%), Postives = 66/118 (55.93%), Query Frame = 1
Query:   22 HVAIQFPAYERIKHYMAKKDDTDVDKLNPGSVMIASSIAKVLASVMTYPHEVVRSRLQEQGQ--NRKVDVQYAGVVDCVKKVFQKEGFPGFYRGCATNLLRTTPSAVITFTSYEIIQR 369
            H  IQ  +YE IK Y +      +D LN   + IASSI+K LAS + YP +VV++RLQ++    N+     Y G  D + K+ + EG  GFYRG   N L+  P+  IT   YE I++
Sbjct:  181 HGGIQMSSYEHIKFYFSSNSGKSLDSLNASEIFIASSISKFLASTILYPFQVVKTRLQDERNIPNQNNVRVYNGTKDVIFKILKNEGIIGFYRGLVPNTLKVIPNTSITLLLYEEIKK 298          
BLAST of CX287960 vs. ExPASy Swiss-Prot
Match: YIA6_YEAST (Uncharacterized mitochondrial carrier YIL006W OS=Saccharomyces cerevisiae GN=YIL006W PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.847e-16
Identity = 47/127 (37.01%), Postives = 78/127 (61.42%), Query Frame = 1
Query:    4 SARGVSHVAIQFPAYERIK---HYMAKKDDTDVDKLNPGSVMIASSIAKVLASVMTYPHEVVRSRLQEQGQNRKVDVQYAGVVDCVKKVFQKEGFPGFYRGCATNLLRTTPSAVITFTSYEIIQRFL 375
            S  G+ HVAI FP YE +K   H  +++++T+   +N   +++ASS++K++AS +TYPHE++R+R+Q +      D     +   +K  + +EG  GFY G  TNL+RT P++ IT  S+E  +  L
Sbjct:  243 SLLGLFHVAIHFPIYEDLKVRFHCYSRENNTN--SINLQRLIMASSVSKMIASAVTYPHEILRTRMQLKSDIP--DSIQRRLFPLIKATYAQEGLKGFYSGFTTNLVRTIPASAITLVSFEYFRNRL 365          
BLAST of CX287960 vs. ExPASy Swiss-Prot
Match: YID3_SCHPO (Uncharacterized mitochondrial carrier C227.03c OS=Schizosaccharomyces pombe GN=SPAC227.03c PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.846e-15
Identity = 42/121 (34.71%), Postives = 73/121 (60.33%), Query Frame = 1
Query:   13 GVSHVAIQFPAYERIKHYMAKKDDTDVDKLNPGSVMIASSIAKVLASVMTYPHEVVRSRLQEQGQNRKVDVQYAGVVDCVKKVFQKEGFPGFYRGCATNLLRTTPSAVITFTSYEIIQRFL 375
            G  HV IQFP YE  K ++    D    K +   +++A++++K+ AS +TYPHEV+R+RLQ           +      ++ +++ EG+  +Y G ATN +RT P++ +TF S+EI++++L
Sbjct:  259 GTLHVGIQFPLYEYFKSFL----DDFFGKKSNFHIVLAATLSKIAASTVTYPHEVLRTRLQSLDAPT-----HNSATLLIRDIWRSEGWRKYYSGMATNFIRTIPASSVTFLSFEIVRKWL 370          
BLAST of CX287960 vs. ExPASy Swiss-Prot
Match: YKQ9_SCHPO (Uncharacterized mitochondrial carrier C688.09 OS=Schizosaccharomyces pombe GN=SPAC688.09 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.148e-15
Identity = 49/134 (36.57%), Postives = 74/134 (55.22%), Query Frame = 1
Query:    4 SARGVSHVAIQFPAYERIKHYMAKKD---------DTDVDK-LNPGSVMIASSIAKVLASVMTYPHEVVRSRLQEQGQNRKVDVQYAGVVDCVKKVFQKEGFPGFYRGCATNLLRTTPSAVITFTSYEIIQRFL 375
            S  GV    +Q+  YE+ KH +A +          +T  DK L+ G  +  + IAK +A+ + YPHEVVR+RL+ Q  +     +Y G++ C K V+ ++G  G Y G   +LLR  P+A I F SYE+I  F+
Sbjct:  228 SLLGVGESTLQWVLYEKFKHAVAIRQLRRKELGIQETIYDKVLDWGGKLGGAGIAKFMAAGIAYPHEVVRTRLR-QSPSINGTPKYTGLIQCFKLVWMEQGIVGLYGGLTAHLLRVVPNACILFGSYEVIMHFI 360          
BLAST of CX287960 vs. ExPASy Swiss-Prot
Match: S2533_BOVIN (Solute carrier family 25 member 33 OS=Bos taurus GN=SLC25A33 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.041e-14
Identity = 43/126 (34.13%), Postives = 70/126 (55.56%), Query Frame = 1
Query:    4 SARGVSHVAIQFPAYERIKHYM------AKKDDTDVDKLNPGSVMIASSIAKVLASVMTYPHEVVRSRLQEQGQNRKVDVQYAGVVDCVKKVFQKEGFPGFYRGCATNLLRTTPSAVITFTSYEII 363
            S  G+S   I F  YE +K Y+      +  + T+ +  N   +M A++++K  AS + YPHEV+R+RL+E+G       +Y   V   + VF++EG+  FYRG    L+R  P+  I  ++YE+I
Sbjct:  193 SYAGISETIICFAIYESLKKYLKEAPLASSTNGTEKNSTNFFGLMAAAALSKGCASCVAYPHEVIRTRLREEGS------KYKSFVQTARLVFREEGYLAFYRGLFAQLIRQIPNTAIVLSTYELI 312          
The following BLAST results are available for this feature:
BLAST of CX287960 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
MCFW_DICDI4.846e-2444.35Mitochondrial substrate carrier family protein W O... [more]
YEA6_YEAST1.046e-1840.00Probable mitochondrial carrier YEL006W OS=Saccharo... [more]
MFTC_MOUSE1.366e-1840.98Mitochondrial folate transporter/carrier OS=Mus mu... [more]
MFTC_MACFA1.783e-1840.65Mitochondrial folate transporter/carrier OS=Macaca... [more]
MFTC_HUMAN2.329e-1840.65Mitochondrial folate transporter/carrier OS=Homo s... [more]
MCFM_DICDI3.363e-1739.83Mitochondrial substrate carrier family protein M O... [more]
YIA6_YEAST2.847e-1637.01Uncharacterized mitochondrial carrier YIL006W OS=S... [more]
YID3_SCHPO1.846e-1534.71Uncharacterized mitochondrial carrier C227.03c OS=... [more]
YKQ9_SCHPO3.148e-1536.57Uncharacterized mitochondrial carrier C688.09 OS=S... [more]
S2533_BOVIN2.041e-1434.13Solute carrier family 25 member 33 OS=Bos taurus G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01015C06SK Veg1 Citrus clementina cDNA clone C01015C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287960 ID=CX287960; Name=CX287960; organism=Citrus clementina; type=EST; length=682bp
AATTCGGCACGAGGAGTTAGTCATGTTGCTATTCAGTTTCCTGCATATGA
GAGAATCAAGCATTACATGGCCAAAAAGGATGACACAGATGTTGATAAGC
TAAATCCTGGAAGTGTTATGATTGCTTCTTCAATAGCAAAAGTACTTGCC
TCTGTAATGACTTACCCACATGAGGTTGTACGTTCAAGGCTTCAAGAGCA
AGGGCAGAACAGAAAGGTTGATGTACAATATGCAGGCGTTGTTGATTGTG
TCAAGAAGGTATTCCAAAAGGAAGGTTTCCCTGGCTTTTACCGTGGCTGT
GCGACAAATCTATTGAGAACGACTCCATCTGCTGTAATTACGTTTACCAG
TTATGAGATAATACAGAGGTTCTTGCTGCGAGTTCTACCTCCGGACAAGA
ATCATTCACAAATCCAGCCTAAATCTGGTGGGCATGTTAAGCCTCAGCAG
AAAATCGATGATGCTGGGGCTGAAGAAAACGATACTTTGCGGCAATCGCA
AATCCAATCAAACAAACTGACTCCCTCAATTCCTCTTGGAAGCAAGGATC
AGCTAACTGCGAGACACTGACCGGCTTTTTTCTTTTCCAACTTCCCTGTT
GGGGAAATTTTCCATCTTCCCTGTTGGGGAAATTTTCCATAAAATTGAAT
TTTGCTGTAAGTTTAATAAAAGTAATTGTTCT
back to top