CX287962

Overview
NameCX287962
Unique NameCX287962
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10260 contig Ccv1_Contig10260:717..1434. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287962 vs. ExPASy Swiss-Prot
Match: CHS2_CITSI (Chalcone synthase 2 OS=Citrus sinensis GN=CHS2 PE=2 SV=1)

HSP 1 Score: 318.161 bits (814), Expect = 2.850e-86
Identity = 162/171 (94.74%), Postives = 162/171 (94.74%), Query Frame = -2
Query:  205 AVIVGADPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 717
            AVIVGADPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVES         KATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA
Sbjct:  221 AVIVGADPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESKLGLKGEKLKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 391          
BLAST of CX287962 vs. ExPASy Swiss-Prot
Match: CHS1_RUTGR (Chalcone synthase 1 OS=Ruta graveolens GN=CHS1 PE=2 SV=1)

HSP 1 Score: 296.204 bits (757), Expect = 1.160e-79
Identity = 147/171 (85.96%), Postives = 153/171 (89.47%), Query Frame = -2
Query:  205 AVIVGADPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 717
            AVIVGADPD S+ERPLYQLVS +QTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSL EAF P+GISDWNSIFWIAHPGGPAILDQVE+         +ATRQVLSEYGNMSSACVLFILDEMRK   EE +ATTGEGLDWGVLFGFGPGLTVETVVL SVPIKA
Sbjct:  223 AVIVGADPDESIERPLYQLVSAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLKEAFGPIGISDWNSIFWIAHPGGPAILDQVEAKLGLKEEKLRATRQVLSEYGNMSSACVLFILDEMRKNCAEEGRATTGEGLDWGVLFGFGPGLTVETVVLRSVPIKA 393          
BLAST of CX287962 vs. ExPASy Swiss-Prot
Match: CHS2_RUTGR (Chalcone synthase 2 OS=Ruta graveolens GN=CHS2 PE=2 SV=1)

HSP 1 Score: 294.278 bits (752), Expect = 4.407e-79
Identity = 146/171 (85.38%), Postives = 153/171 (89.47%), Query Frame = -2
Query:  205 AVIVGADPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 717
            AVIVGADP+ S+ERPLYQLVS +QTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSL EAF P+GISDWNSIFWIAHPGGPAILDQVE+         +ATRQVLSEYGNMSSACVLFILDEMRKK  EE +ATTGEGLDWGVLFGFGPGLTVETVVL SVPI A
Sbjct:  223 AVIVGADPNESIERPLYQLVSAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLKEAFGPIGISDWNSIFWIAHPGGPAILDQVEAKLGLKEEKLRATRQVLSEYGNMSSACVLFILDEMRKKCAEEGRATTGEGLDWGVLFGFGPGLTVETVVLRSVPINA 393          
BLAST of CX287962 vs. ExPASy Swiss-Prot
Match: CHSY_PETCR (Chalcone synthase OS=Petroselinum crispum GN=CHS PE=3 SV=1)

HSP 1 Score: 293.508 bits (750), Expect = 7.517e-79
Identity = 143/168 (85.12%), Postives = 153/168 (91.07%), Query Frame = -2
Query:  214 AVIVGADPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVP 717
            AVI+G+DPD SVERPL+QL+S +QTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSL EAF P+GISDWNS+FWIAHPGGPAILDQVE          +ATRQVLS+YGNMSSACVLFILDEMRKKS+EE KATTGEGLDWGVLFGFGPGLTVETVVLHSVP
Sbjct:  226 AVILGSDPDLSVERPLFQLISAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLKEAFGPIGISDWNSLFWIAHPGGPAILDQVELKLGLKEEKMRATRQVLSDYGNMSSACVLFILDEMRKKSIEEGKATTGEGLDWGVLFGFGPGLTVETVVLHSVP 393          
BLAST of CX287962 vs. ExPASy Swiss-Prot
Match: CHS2_DAUCA (Chalcone synthase 2 OS=Daucus carota GN=CHS2 PE=2 SV=1)

HSP 1 Score: 293.508 bits (750), Expect = 7.517e-79
Identity = 143/168 (85.12%), Postives = 153/168 (91.07%), Query Frame = -2
Query:  214 AVIVGADPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVP 717
            AVIVG+DPD SVERPL+QL+S +QTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSL EAF P+GISDWNS+FWIAHPGGPAILDQVE          +ATRQVLS+YGNMSSACVLFILDEMRKKS+EE KATTG+GLDWGVLFGFGPGLTVETVVLHSVP
Sbjct:  225 AVIVGSDPDLSVERPLFQLISAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLKEAFGPIGISDWNSLFWIAHPGGPAILDQVELKLGLKEEKMRATRQVLSDYGNMSSACVLFILDEMRKKSIEEGKATTGDGLDWGVLFGFGPGLTVETVVLHSVP 392          
BLAST of CX287962 vs. ExPASy Swiss-Prot
Match: CHS3_RUTGR (Chalcone synthase 3 OS=Ruta graveolens GN=CHS3 PE=2 SV=1)

HSP 1 Score: 293.123 bits (749), Expect = 9.817e-79
Identity = 146/171 (85.38%), Postives = 151/171 (88.30%), Query Frame = -2
Query:  205 AVIVGADPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 717
            AVIVGADPD S+ERPLYQLVS +QTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSL EAF P+GISDWNSIFWIAHPGGPAILDQVE          +ATR VLSEYGNMSSACVLFILDEMRKK  EE  ATTGEGL+WGVLFGFGPGLTVETVVL SVPIKA
Sbjct:  223 AVIVGADPDESIERPLYQLVSAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLKEAFGPIGISDWNSIFWIAHPGGPAILDQVEEKLELKEEKLRATRHVLSEYGNMSSACVLFILDEMRKKCAEEGMATTGEGLEWGVLFGFGPGLTVETVVLRSVPIKA 393          
BLAST of CX287962 vs. ExPASy Swiss-Prot
Match: CHSY_BETVE (Chalcone synthase OS=Betula verrucosa GN=CHS PE=2 SV=2)

HSP 1 Score: 291.967 bits (746), Expect = 2.187e-78
Identity = 142/169 (84.02%), Postives = 154/169 (91.12%), Query Frame = -2
Query:  211 AVIVGADPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 717
            AVIVGADPDTSVERPL++L+S +QTILPDSDGAIDGHLREVGLTFHLLKDVPG+ISKNIEKSL+EAFAPLGISDWNS+FWIAHPGGPAILDQVES         +ATR VLSEYGNMSSACVLFILDEMR+ S+E  K TTGEGL+WGVLFGFGPGLTVETVVLHSVP+
Sbjct:  221 AVIVGADPDTSVERPLFELISAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGIISKNIEKSLAEAFAPLGISDWNSLFWIAHPGGPAILDQVESKLGLKEEKLRATRHVLSEYGNMSSACVLFILDEMRRNSLEGGKVTTGEGLEWGVLFGFGPGLTVETVVLHSVPV 389          
BLAST of CX287962 vs. ExPASy Swiss-Prot
Match: CHSY_ORYSJ (Chalcone synthase OS=Oryza sativa subsp. japonica GN=CHS PE=2 SV=1)

HSP 1 Score: 286.96 bits (733), Expect = 7.036e-77
Identity = 139/171 (81.29%), Postives = 153/171 (89.47%), Query Frame = -2
Query:  205 AVIVGADPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 717
            AVIVG+DPD +VERPL+Q+VS SQTILPDS+GAIDGHLREVGLTFHLLKDVPGLISKNIE++L +AF PLGISDWNSIFW+AHPGGPAILDQVE+         +ATR VLSEYGNMSSACVLFILDEMRK+S E+  ATTGEG+DWGVLFGFGPGLTVETVVLHSVPI A
Sbjct:  224 AVIVGSDPDEAVERPLFQMVSASQTILPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIERALGDAFTPLGISDWNSIFWVAHPGGPAILDQVEAKVGLDKERMRATRHVLSEYGNMSSACVLFILDEMRKRSAEDGHATTGEGMDWGVLFGFGPGLTVETVVLHSVPITA 394          
BLAST of CX287962 vs. ExPASy Swiss-Prot
Match: CHSY_ORYSI (Chalcone synthase OS=Oryza sativa subsp. indica GN=CHS PE=2 SV=1)

HSP 1 Score: 286.96 bits (733), Expect = 7.036e-77
Identity = 139/171 (81.29%), Postives = 153/171 (89.47%), Query Frame = -2
Query:  205 AVIVGADPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 717
            AVIVG+DPD +VERPL+Q+VS SQTILPDS+GAIDGHLREVGLTFHLLKDVPGLISKNIE++L +AF PLGISDWNSIFW+AHPGGPAILDQVE+         +ATR VLSEYGNMSSACVLFILDEMRK+S E+  ATTGEG+DWGVLFGFGPGLTVETVVLHSVPI A
Sbjct:  224 AVIVGSDPDEAVERPLFQMVSASQTILPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIERALGDAFTPLGISDWNSIFWVAHPGGPAILDQVEAKVGLDKERMRATRHVLSEYGNMSSACVLFILDEMRKRSAEDGHATTGEGMDWGVLFGFGPGLTVETVVLHSVPITA 394          
BLAST of CX287962 vs. ExPASy Swiss-Prot
Match: CHS4_SORBI (Chalcone synthase 4 OS=Sorghum bicolor GN=CHS4 PE=3 SV=1)

HSP 1 Score: 285.804 bits (730), Expect = 1.567e-76
Identity = 141/169 (83.43%), Postives = 152/169 (89.94%), Query Frame = -2
Query:  211 AVIVGADPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 717
            AVIVGADPD  VERPL+QLVS SQTILPDS+GAIDGHLREVGLTFHLLKDVPGLISKNIE+SL EAF PLGI+D+NSIFW+AHPGGPAILDQVE+         +ATR VLSEYGNMSSACVLFILDEMRK+S E+ +ATTGEGLDWGVLFGFGPGLTVETVVLHSVPI
Sbjct:  225 AVIVGADPDERVERPLFQLVSASQTILPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIERSLEEAFKPLGITDYNSIFWVAHPGGPAILDQVEAKVGLKKERMRATRHVLSEYGNMSSACVLFILDEMRKRSAEDGQATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 393          
The following BLAST results are available for this feature:
BLAST of CX287962 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
CHS2_CITSI2.850e-8694.74Chalcone synthase 2 OS=Citrus sinensis GN=CHS2 PE=... [more]
CHS1_RUTGR1.160e-7985.96Chalcone synthase 1 OS=Ruta graveolens GN=CHS1 PE=... [more]
CHS2_RUTGR4.407e-7985.38Chalcone synthase 2 OS=Ruta graveolens GN=CHS2 PE=... [more]
CHSY_PETCR7.517e-7985.12Chalcone synthase OS=Petroselinum crispum GN=CHS P... [more]
CHS2_DAUCA7.517e-7985.12Chalcone synthase 2 OS=Daucus carota GN=CHS2 PE=2 ... [more]
CHS3_RUTGR9.817e-7985.38Chalcone synthase 3 OS=Ruta graveolens GN=CHS3 PE=... [more]
CHSY_BETVE2.187e-7884.02Chalcone synthase OS=Betula verrucosa GN=CHS PE=2 ... [more]
CHSY_ORYSJ7.036e-7781.29Chalcone synthase OS=Oryza sativa subsp. japonica ... [more]
CHSY_ORYSI7.036e-7781.29Chalcone synthase OS=Oryza sativa subsp. indica GN... [more]
CHS4_SORBI1.567e-7683.43Chalcone synthase 4 OS=Sorghum bicolor GN=CHS4 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC01015C08SK Veg1 Citrus clementina cDNA clone C01015C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287962 ID=CX287962; Name=CX287962; organism=Citrus clementina; type=EST; length=718bp
TTTTTTTTTTTTTTTTTTTCCAAGAATTTATGCATAAACACAAAGCGTTG
CCCAGGTTTGGTGACGTCATAAGAGAAAAGGCACGATGCCTTAAACTCAA
TTGACAAAACTAAACCTTCACACGATCAACCAATAACTCAACTGTGAAAG
CATACAACATAAAGTTACTGAACTACTAAACATACTGATGGAGTTCTCAC
TTCAAGCTTTGATGGGGACACTGTGCAGCACAACGGTCTCGACGGTGAGC
CCCGGCCCGAACCCGAACAGCACACCCCAATCAAGCCCTTCGCCGGTGGT
GGCTTTCGCTTCCTCAACAGACTTCTTTCTCATCTCGTCAAGGATGAACA
AGACACAAGCGCTTGACATGTTACCGTACTCACTCAACACTTGACGTGTG
GCCTTCAGCTTCTCCCCTTTGAGGCCCAGTTTAGACTCCACTTGGTCCAG
AATTGCGGGCCCACCGGGGTGAGCGATCCAGAATATCGAGTTCCAGTCGC
TGATGCCAAGCGGGGCGAACGCTTCAGACAGGCTTTTCTCTATATTCTTT
GAGATCAAGCCGGGGACGTCTTTAAGCAAATGGAAAGTGAGACCGACTTC
GCGCAAGTGTCCGTCAATTGCACCGTCAGAGTCAGGGAGGATCGTCTGCG
AAGTCGACACGAGCTGATACAACGGACGCTCGACCGACGTGTCAGGATCG
GCACCCACGATCACAGCA
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