CX287964

Overview
NameCX287964
Unique NameCX287964
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length756
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287964 vs. ExPASy Swiss-Prot
Match: ATXR2_ARATH (Histone-lysine N-methyltransferase ATXR2 OS=Arabidopsis thaliana GN=ATXR2 PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.568e-45
Identity = 85/103 (82.52%), Postives = 91/103 (88.35%), Query Frame = 3
Query:  300 QKEAEKITRPILDALGDDYSICCQGTAFFPLQSCMNHSCCPNAKAFKREEDRDGQAVIIAQRPICKGEEVTISYIDEDLPYGERQTLLADYGFRCSCPKCLEE 608
            ++E E+ITRP LDALGD+YS CCQGTAFFPLQSCMNHSCCPNAKAFKREEDRDGQAVIIA R I K EEVTISYIDE+LPY ERQ LLADYGF C C KCLE+
Sbjct:  367 KEETEEITRPFLDALGDEYSDCCQGTAFFPLQSCMNHSCCPNAKAFKREEDRDGQAVIIALRRISKNEEVTISYIDEELPYKERQALLADYGFSCKCSKCLED 469          

HSP 2 Score: 81.2629 bits (199), Expect = 6.426e-15
Identity = 51/93 (54.84%), Postives = 53/93 (56.99%), Query Frame = 2
Query:    8 SLQLLKAAIFDSECEPLFSLEIYGHIIGMFEXXXXXXXXXXXXXGHIYVFSDLVVASPVEDYFLYIDDLLHGEKVRMNLVILESFHFCMRPFL 286
            SL+LLK AIFD ECE LFSLEIYG+IIGMFE                    DLVVASPVEDYFLYIDDL   EK        E      RPFL
Sbjct:  310 SLELLKIAIFDKECEALFSLEIYGNIIGMFELNNL----------------DLVVASPVEDYFLYIDDLPDAEK--------EETEEITRPFL 378          
BLAST of CX287964 vs. ExPASy Swiss-Prot
Match: SMYD5_XENLA (SET and MYND domain-containing protein 5 OS=Xenopus laevis GN=smyd5 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.630e-11
Identity = 46/123 (37.40%), Postives = 62/123 (50.41%), Query Frame = 3
Query:  297 LQKEAEKITRPILDALGDDYSICCQGTAFFPLQSCMNHSCCPNAKAFKREEDRDGQAVIIAQRPICKGEEVTISYID---EDLPYGERQTLLAD-YGFRCSCPKCLEEEP*PIKVLLEKNTEQ 653
            L K+ EK+T   L+         C+G+  + LQSC NHSC PNA+A     D +    + A   I  GEE+ ISY+D    D     RQ +L + Y F CSCPKCL +   P     E+  E+
Sbjct:  287 LYKDIEKVTGEFLN---------CEGSGLYLLQSCCNHSCVPNAEA--SFPDNNFILHLTALEDIQPGEEICISYLDCCQRDRSRHSRQKILRENYLFMCSCPKCLAQADEPDITSEEEEEEE 398          
The following BLAST results are available for this feature:
BLAST of CX287964 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ATXR2_ARATH1.568e-4582.52Histone-lysine N-methyltransferase ATXR2 OS=Arabid... [more]
SMYD5_XENLA5.630e-1137.40SET and MYND domain-containing protein 5 OS=Xenopu... [more]
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Properties
Property NameValue
Genbank descriptionC01015C10SK Veg1 Citrus clementina cDNA clone C01015C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287964 ID=CX287964; Name=CX287964; organism=Citrus clementina; type=EST; length=756bp
GTTTCAGTCGCTGCAGCTCCTAAAGGCAGCCATCTTTGACAGCGAGTGTG
AGCCATTATTCTCCCTTGAAATCTACGGACATATTATTGGCATGTTTGAG
CTAAATAATCTGTAAGTCACTTTACGAAGGCTTCTCAGGGGACATATTTA
CGTATTTAGTGATTTGGTTGTAGCATCTCCAGTAGAGGATTACTTTCTGT
ATATTGATGATCTTCTGCATGGTGAAAAGGTTAGAATGAATCTTGTGATT
TTAGAGTCCTTTCATTTTTGTATGCGACCCTTCCTTTTATGGTTTGTTGC
AGAAAGAGGCTGAGAAAATTACTCGACCAATCCTTGATGCTCTTGGTGAT
GACTATTCAATTTGTTGTCAAGGGACTGCATTCTTCCCTTTGCAGAGTTG
TATGAACCATTCCTGCTGTCCTAATGCAAAAGCATTCAAAAGAGAAGAGG
ACAGAGATGGCCAAGCAGTTATTATTGCACAGAGACCCATTTGTAAGGGA
GAAGAGGTTACCATTTCATATATAGATGAGGACCTTCCTTATGGAGAGAG
GCAGACATTACTTGCAGATTATGGTTTCAGATGTAGTTGCCCCAAGTGCT
TAGAAGAAGAGCCATGACCCATAAAAGTGCTTCTAGAAAAGAATACAGAG
CAGATTAAGAGCATCAGGCTTGGAACACGGCTATCGGGATACAGGAAGCT
GCTCCTTTAGCATATCATGCCTTCAGCCGTTCATCTGCCACCAATGCTAA
TCACGT
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