CX287966

Overview
NameCX287966
Unique NameCX287966
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287966 vs. ExPASy Swiss-Prot
Match: GLNA2_ARATH (Glutamine synthetase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=GLN2 PE=1 SV=1)

HSP 1 Score: 347.051 bits (889), Expect = 5.201e-95
Identity = 161/174 (92.53%), Postives = 170/174 (97.70%), Query Frame = 1
Query:    1 INISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSTREEGGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILWEPT 522
            INISGTNGEVMPGQWE+QVGPSVGIDAGDH+WC+RYLLERITEQAGVVL+LDPKPIEGDWNGAGCHTNYSTKS REEGG+E IKKAILNLSLRHKEHISAYGEGNERRLTGKHETASID FSWGVANRGCSIRVGR+TE +GKGYLEDRRPASNMDPY+VTSLLAETT+LWEPT
Sbjct:  242 INISGTNGEVMPGQWEFQVGPSVGIDAGDHVWCARYLLERITEQAGVVLTLDPKPIEGDWNGAGCHTNYSTKSMREEGGFEVIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDQFSWGVANRGCSIRVGRDTEAKGKGYLEDRRPASNMDPYIVTSLLAETTLLWEPT 415          
BLAST of CX287966 vs. ExPASy Swiss-Prot
Match: GLNA2_DAUCA (Glutamine synthetase, chloroplastic OS=Daucus carota GN=GLN2 PE=2 SV=1)

HSP 1 Score: 345.895 bits (886), Expect = 1.159e-94
Identity = 161/174 (92.53%), Postives = 171/174 (98.28%), Query Frame = 1
Query:    1 INISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSTREEGGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILWEPT 522
            INISGTNGEVMPGQWE+QVGPSVGI+AGDHIWC+RYLLERITEQAGVVL+LDPKPI+GDWNGAGCHTNYSTKS REEGG+E IKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDSFSWGVA+RGCSIRVGR+TEK+GKGYLEDRRPASNMDPYVVT LLAETT+LWEPT
Sbjct:  244 INISGTNGEVMPGQWEFQVGPSVGIEAGDHIWCARYLLERITEQAGVVLTLDPKPIDGDWNGAGCHTNYSTKSMREEGGFEVIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDSFSWGVADRGCSIRVGRDTEKEGKGYLEDRRPASNMDPYVVTGLLAETTLLWEPT 417          
BLAST of CX287966 vs. ExPASy Swiss-Prot
Match: GLNAC_BRANA (Glutamine synthetase, chloroplastic OS=Brassica napus GN=GLN2 PE=2 SV=1)

HSP 1 Score: 344.354 bits (882), Expect = 3.371e-94
Identity = 159/174 (91.38%), Postives = 170/174 (97.70%), Query Frame = 1
Query:    1 INISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSTREEGGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILWEPT 522
            INISGTNGEVMPGQWE+QVGPSVGI+AGDH+WC+RYLLERITEQAGVVL+LDPKPIEGDWNGAGCHTNYSTKS RE+GG+E IKKAILNLSLRH EHISAYGEGNERRLTGKHETASID FSWGVANRGCSIRVGR+TEK+GKGYLEDRRPASNMDPY+VTSLLAETT+LWEPT
Sbjct:  240 INISGTNGEVMPGQWEFQVGPSVGIEAGDHVWCARYLLERITEQAGVVLTLDPKPIEGDWNGAGCHTNYSTKSMREDGGFEVIKKAILNLSLRHMEHISAYGEGNERRLTGKHETASIDQFSWGVANRGCSIRVGRDTEKKGKGYLEDRRPASNMDPYIVTSLLAETTLLWEPT 413          
BLAST of CX287966 vs. ExPASy Swiss-Prot
Match: GLNA4_PHAVU (Glutamine synthetase leaf isozyme, chloroplastic OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 343.584 bits (880), Expect = 5.750e-94
Identity = 161/174 (92.53%), Postives = 170/174 (97.70%), Query Frame = 1
Query:    1 INISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSTREEGGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILWEPT 522
            INISGTNGEVMPGQWEYQVGPSVGI+AGDHIW SRY+LERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKS RE+GG+E IKKAILNLSLRHKEHISAYGEGNERRLTGKHETASI++FSWGVANRGCSIRVGR+TEK GKGYLEDRRPASNMDPYVVTSLLAE+T+LWEPT
Sbjct:  241 INISGTNGEVMPGQWEYQVGPSVGIEAGDHIWASRYILERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSMREDGGFEVIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASINTFSWGVANRGCSIRVGRDTEKNGKGYLEDRRPASNMDPYVVTSLLAESTLLWEPT 414          
BLAST of CX287966 vs. ExPASy Swiss-Prot
Match: GLNA2_MEDSA (Glutamine synthetase leaf isozyme, chloroplastic OS=Medicago sativa GN=GS2 PE=2 SV=1)

HSP 1 Score: 337.035 bits (863), Expect = 5.382e-92
Identity = 157/174 (90.23%), Postives = 168/174 (96.55%), Query Frame = 1
Query:    1 INISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSTREEGGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILWEPT 522
            INISGTNGEVMPGQWEYQVGPSVGI+AGDHIW SRY+LERITEQAGVVL+LDPKPIEGDWNGAGCHTNYSTKS RE+GG+E IKKAILNLSLRHK HI AYGEGNERRLTGKHETASI++FSWGVANRGCSIRVGR+TEK GKGYLEDRRPASNMDPYVVT+LLAE+T+LWEPT
Sbjct:  240 INISGTNGEVMPGQWEYQVGPSVGIEAGDHIWASRYILERITEQAGVVLTLDPKPIEGDWNGAGCHTNYSTKSMREDGGFEVIKKAILNLSLRHKVHIEAYGEGNERRLTGKHETASINTFSWGVANRGCSIRVGRDTEKNGKGYLEDRRPASNMDPYVVTALLAESTLLWEPT 413          
BLAST of CX287966 vs. ExPASy Swiss-Prot
Match: GLNA2_PEA (Glutamine synthetase leaf isozyme, chloroplastic OS=Pisum sativum GN=GS2 PE=2 SV=2)

HSP 1 Score: 336.265 bits (861), Expect = 9.180e-92
Identity = 157/174 (90.23%), Postives = 167/174 (95.98%), Query Frame = 1
Query:    1 INISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSTREEGGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILWEPT 522
            INISGTNGEVMPGQWEYQVGPSVGI+AGDHIW SRY+LERITEQAGVVL+LDPKPIEGDWNGAGCHTNYSTKS RE+GG+E IKKAILNLSLRHK HI AYGEGNERRLTGKHETASI+ FSWGVANRGCSIRVGR+TEK GKGYLEDRRPASNMDPYVVT+LLAE+T+LWEPT
Sbjct:  242 INISGTNGEVMPGQWEYQVGPSVGIEAGDHIWASRYILERITEQAGVVLTLDPKPIEGDWNGAGCHTNYSTKSMREDGGFEVIKKAILNLSLRHKIHIEAYGEGNERRLTGKHETASINDFSWGVANRGCSIRVGRDTEKNGKGYLEDRRPASNMDPYVVTALLAESTLLWEPT 415          
BLAST of CX287966 vs. ExPASy Swiss-Prot
Match: GLNA2_ORYSJ (Glutamine synthetase, chloroplastic OS=Oryza sativa subsp. japonica GN=GLN2 PE=1 SV=1)

HSP 1 Score: 333.954 bits (855), Expect = 4.556e-91
Identity = 157/174 (90.23%), Postives = 167/174 (95.98%), Query Frame = 1
Query:    1 INISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSTREEGGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILWEPT 522
            INISGTNGEVMPGQWEYQVGPSVGI+AGDHIW SRY+LERITEQAGVVL+LDPKPI+GDWNGAGCHTNYSTKS RE+GG+E IKKAILNLSLRH  HISAYGEGNERRLTG HETASID+FSWGVANRGCSIRVGR+TE +GKGYLEDRRPASNMDPYVVT+LLAETTILWEPT
Sbjct:  240 INISGTNGEVMPGQWEYQVGPSVGIEAGDHIWISRYILERITEQAGVVLTLDPKPIQGDWNGAGCHTNYSTKSMREDGGFEVIKKAILNLSLRHDLHISAYGEGNERRLTGLHETASIDNFSWGVANRGCSIRVGRDTEAKGKGYLEDRRPASNMDPYVVTALLAETTILWEPT 413          
BLAST of CX287966 vs. ExPASy Swiss-Prot
Match: GLNAC_MAIZE (Glutamine synthetase, chloroplastic OS=Zea mays GN=GLN2 PE=2 SV=1)

HSP 1 Score: 327.791 bits (839), Expect = 3.265e-89
Identity = 152/174 (87.36%), Postives = 166/174 (95.40%), Query Frame = 1
Query:    1 INISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSTREEGGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILWEPT 522
            INISGTNGEVMPGQWEYQVGPSVGI+AGDHIW SRY+LERITEQAGVVL+LDPKPI+GDWNGAGCHTNYSTK+ RE+GG+E IK+AILNLSLRH  HISAYGEGNERRLTGKHETASI +FSWGVANRGCSIRVGR+TE +GKGYLEDRRPASNMDPY+VT LLAETTILW+P+
Sbjct:  235 INISGTNGEVMPGQWEYQVGPSVGIEAGDHIWISRYILERITEQAGVVLTLDPKPIQGDWNGAGCHTNYSTKTMREDGGFEEIKRAILNLSLRHDLHISAYGEGNERRLTGKHETASIGTFSWGVANRGCSIRVGRDTEAKGKGYLEDRRPASNMDPYIVTGLLAETTILWQPS 408          
BLAST of CX287966 vs. ExPASy Swiss-Prot
Match: GLNA2_HORVU (Glutamine synthetase leaf isozyme, chloroplastic OS=Hordeum vulgare PE=2 SV=2)

HSP 1 Score: 324.324 bits (830), Expect = 3.610e-88
Identity = 152/174 (87.36%), Postives = 162/174 (93.10%), Query Frame = 1
Query:    1 INISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSTREEGGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILWEPT 522
            I ISGTNGEVMPGQWEYQVGPSVGIDAGDHIW SRY+LERITEQAGVVL+LDPKPI+GDWNGAGCHTNYST S RE+GG++ IKKAILNLSLRH  HI+AYGEGNERRLTG HETASI  FSWGVANRGCSIRVGR+TE +GKGYLEDRRPASNMDPY VT+LLAETTILWEPT
Sbjct:  246 IEISGTNGEVMPGQWEYQVGPSVGIDAGDHIWASRYILERITEQAGVVLTLDPKPIQGDWNGAGCHTNYSTLSMREDGGFDVIKKAILNLSLRHDLHIAAYGEGNERRLTGLHETASISDFSWGVANRGCSIRVGRDTEAKGKGYLEDRRPASNMDPYTVTALLAETTILWEPT 419          
BLAST of CX287966 vs. ExPASy Swiss-Prot
Match: GLNA_PINSY (Glutamine synthetase cytosolic isozyme OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 311.227 bits (796), Expect = 3.162e-84
Identity = 140/173 (80.92%), Postives = 160/173 (92.49%), Query Frame = 1
Query:    1 INISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSTREEGGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILWEP 519
            INISG NGEVMPGQWE+QVGPSVGI A D +WC+R+++ERITE+AGVVLS DPKPIEGDWNGAGCHTNYSTKS R+EGG+E IKKAI  L LRHKEHISAYGEGNERRLTG+HETA +++FSWGVANRG S+RVGR+TEK+GKGY EDRRPASNMDPY+VTS++AETTILW+P
Sbjct:  185 INISGINGEVMPGQWEFQVGPSVGISAADELWCARFIMERITEKAGVVLSFDPKPIEGDWNGAGCHTNYSTKSMRKEGGFEVIKKAIEKLKLRHKEHISAYGEGNERRLTGRHETADMNTFSWGVANRGASVRVGRDTEKEGKGYFEDRRPASNMDPYIVTSMIAETTILWKP 357          
The following BLAST results are available for this feature:
BLAST of CX287966 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
GLNA2_ARATH5.201e-9592.53Glutamine synthetase, chloroplastic/mitochondrial ... [more]
GLNA2_DAUCA1.159e-9492.53Glutamine synthetase, chloroplastic OS=Daucus caro... [more]
GLNAC_BRANA3.371e-9491.38Glutamine synthetase, chloroplastic OS=Brassica na... [more]
GLNA4_PHAVU5.750e-9492.53Glutamine synthetase leaf isozyme, chloroplastic O... [more]
GLNA2_MEDSA5.382e-9290.23Glutamine synthetase leaf isozyme, chloroplastic O... [more]
GLNA2_PEA9.180e-9290.23Glutamine synthetase leaf isozyme, chloroplastic O... [more]
GLNA2_ORYSJ4.556e-9190.23Glutamine synthetase, chloroplastic OS=Oryza sativ... [more]
GLNAC_MAIZE3.265e-8987.36Glutamine synthetase, chloroplastic OS=Zea mays GN... [more]
GLNA2_HORVU3.610e-8887.36Glutamine synthetase leaf isozyme, chloroplastic O... [more]
GLNA_PINSY3.162e-8480.92Glutamine synthetase cytosolic isozyme OS=Pinus sy... [more]

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Properties
Property NameValue
Genbank descriptionC01015C12SK Veg1 Citrus clementina cDNA clone C01015C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287966 ID=CX287966; Name=CX287966; organism=Citrus clementina; type=EST; length=679bp
ATTAACATTAGTGGCACCAACGGGGAGGTTATGCCTGGCCAGTGGGAATA
TCAAGTTGGTCCCAGTGTAGGCATTGATGCTGGAGATCATATATGGTGTT
CGAGATACCTTCTTGAGAGAATCACTGAACAAGCTGGTGTGGTTCTCTCA
CTTGATCCAAAACCAATTGAGGGAGACTGGAATGGTGCTGGATGCCACAC
CAATTACAGTACAAAGAGTACGAGAGAGGAAGGAGGCTATGAAACTATTA
AGAAGGCAATCTTGAATCTGTCCCTTCGCCATAAAGAACACATCAGTGCT
TATGGTGAAGGAAATGAGAGAAGGCTAACAGGAAAGCATGAAACAGCTAG
CATTGACTCATTTTCTTGGGGTGTGGCAAATCGTGGTTGCTCAATCCGTG
TGGGACGTGAAACTGAGAAGCAAGGCAAAGGTTACTTGGAAGATAGGCGT
CCAGCTTCAAACATGGACCCTTATGTAGTGACCTCGTTACTGGCTGAAAC
TACAATATTGTGGGAACCCACACTTGAGGCTGAAGCGCTAGCTGCTCAGA
AGTTGGCATTGAATGTCTGAAGTTGATTATAGATCAACTGAAGAACTTGA
GAAGCAGTCTCTTGGATTTAAAATGCCCGTGCTTGGGGGAATACTTTTCC
CTTTCCTTTTTAGTTCTTTAGGGAAGAAC
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