CX287969

Overview
NameCX287969
Unique NameCX287969
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287969 vs. ExPASy Swiss-Prot
Match: HSFA2_ARATH (Heat stress transcription factor A-2 OS=Arabidopsis thaliana GN=HSFA2 PE=1 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.755e-37
Identity = 79/132 (59.85%), Postives = 102/132 (77.27%), Query Frame = 3
Query:  261 LKTIKRRRHVS-QSMQQRG-GEACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLAQSNAHRRELGGVQTGRKRRLTATPSMENLXETI 650
            LK IKRRR++  Q++ Q+G G +C+EVGQYG DGE+ERLKRD  VL+AE+VRLRQ Q  S+ Q++AME RLL TEK+QQQMMTFLAKAL NP+F QQ A  +  ++ L G+  GRKRRLT+TPS+  + E +
Sbjct:  128 LKNIKRRRNMGLQNVNQQGSGMSCVEVGQYGFDGEVERLKRDHGVLVAEVVRLRQQQHSSKSQVAAMEQRLLVTEKRQQQMMTFLAKALNNPNFVQQFAVMSKEKKSLFGLDVGRKRRLTSTPSLGTMEENL 259          
BLAST of CX287969 vs. ExPASy Swiss-Prot
Match: HSF30_SOLPE (Heat shock factor protein HSF30 OS=Solanum peruvianum GN=HSF30 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 7.035e-35
Identity = 70/123 (56.91%), Postives = 94/123 (76.42%), Query Frame = 3
Query:  261 LKTIKRRRHVSQSMQQRGGEACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLAQSNAHRRELGGVQTGRKRRLTATPSM 629
            LKTIKRRR+V QSM Q+G  AC+E+G YG++ ELERLKRD+NVLM EIV+LRQ QQ +R+Q+ AM +++ + E+KQ QMM+FLAK   NP+F QQ      HR++   ++ G+KRRLT TPS+
Sbjct:  115 LKTIKRRRNVGQSMNQQGSGACIEIGYYGMEEELERLKRDKNVLMTEIVKLRQQQQSTRNQIIAMGEKIETQERKQVQMMSFLAKIFSNPTFLQQYLDKQVHRKDKQRIEVGQKRRLTMTPSV 237          
BLAST of CX287969 vs. ExPASy Swiss-Prot
Match: HFA2C_ORYSJ (Heat stress transcription factor A-2c OS=Oryza sativa subsp. japonica GN=HSFA2C PE=2 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 3.739e-28
Identity = 62/118 (52.54%), Postives = 88/118 (74.58%), Query Frame = 3
Query:  261 LKTIKRRRHVSQS--MQQRGGEACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLAQSNAHRRELGGVQTGRKRR 608
            LKTIKRR+  S +   QQ+   +CLEVG++G + E++RLKRD+N+L+ E+V+LRQ QQ ++D + AMEDRL + E+KQ QMM FLA+A++NP FFQQLAQ    R+EL    + ++RR
Sbjct:  126 LKTIKRRKPPSNAPPSQQQSLTSCLEVGEFGFEEEIDRLKRDKNILITEVVKLRQEQQATKDHVKAMEDRLRAAEQKQVQMMGFLARAMRNPEFFQQLAQQKEKRKELEDAISKKRRR 243          
BLAST of CX287969 vs. ExPASy Swiss-Prot
Match: HFA2B_ORYSJ (Heat stress transcription factor A-2b OS=Oryza sativa subsp. japonica GN=HSFA2B PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.052e-26
Identity = 63/136 (46.32%), Postives = 90/136 (66.18%), Query Frame = 3
Query:  261 LKTIKRRR---HVSQSMQQRGGEACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLAQSNAHRREL-GGVQTGRKRRLTATPSMENLXETISV 656
            LK IKRR+   H + + Q  G    LEVG +G D E++RLKRD+ +LMAE+V+LRQ QQ ++  L AMEDRL  TE++QQQMM FLA+ +KNP F +QL   N  R+EL   +   R+RR+   P ++++  + S+
Sbjct:  136 LKNIKRRKPPSHTASNQQSLG--PYLEVGHFGYDAEIDRLKRDKQLLMAEVVKLRQEQQNTKANLKAMEDRLQGTEQRQQQMMAFLARVMKNPEFLKQLMSQNEMRKELQDAISKKRRRRIDQGPEVDDVGTSSSI 269          
BLAST of CX287969 vs. ExPASy Swiss-Prot
Match: HFA2E_ORYSJ (Heat stress transcription factor A-2e OS=Oryza sativa subsp. japonica GN=HSFA2E PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.275e-24
Identity = 56/127 (44.09%), Postives = 87/127 (68.50%), Query Frame = 3
Query:  261 LKTIKRRRHVSQSMQQRGGEACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLAQSNAHRRELGG-VQTGRKRRLTATPSMENL 638
            LK+IKRR+  + S  Q+   + LEVG +G +GE+++LKRD+++LMAE+V+LRQ QQ ++  L AME +L  TE+KQQ MM FL++ + NP F +QL   +  R+EL   V   R+RR+   P ++++
Sbjct:  122 LKSIKRRKPPNSSPSQQSLGSFLEVGHFGYEGEIDQLKRDKHLLMAEVVKLRQEQQNTKSDLQAMEQKLQGTEQKQQHMMAFLSRVMHNPEFIRQLFSQSEMRKELEEFVSKKRRRRIDQGPELDSM 248          
BLAST of CX287969 vs. ExPASy Swiss-Prot
Match: HFA2A_ORYSJ (Heat stress transcription factor A-2a OS=Oryza sativa subsp. japonica GN=HSFA2A PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.297e-24
Identity = 63/133 (47.37%), Postives = 83/133 (62.41%), Query Frame = 3
Query:  261 LKTIKRRR------------HVSQSMQQRGGEACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQ-----QLAQSNAHRRELGGVQTGRKRR 608
            LKTIKRRR              S   QQ+   ACLEVGQ+G DG + RL+RD++VL+AE+V+LRQ QQ +R Q+ AME+R+ + E+KQQQM  FLA+A+KNP F Q     Q  Q  A  R L    + ++RR
Sbjct:  137 LKTIKRRRPPPSSPPSSSSSSSSSQHQQQPAAACLEVGQFGRDGVVNRLQRDKSVLIAEVVKLRQEQQTTRAQMQAMEERISAAEQKQQQMTVFLARAMKNPGFLQMLVDRQAGQHGARNRVLEDALSKKRRR 269          
BLAST of CX287969 vs. ExPASy Swiss-Prot
Match: HFA6B_ARATH (Heat stress transcription factor A-6b OS=Arabidopsis thaliana GN=HSFA6b PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.621e-23
Identity = 54/125 (43.20%), Postives = 85/125 (68.00%), Query Frame = 3
Query:  261 LKTIKRRRHVSQSMQQRGGEA---------CLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLAQSNAHRRELGGVQTGRKRR 608
            LK I+RR+  + S Q +  ++         C+EVG+YGLDGE++ L+RD+ VLM E+VRLRQ QQ ++  L+ +E++L  TE KQ+QMM+FLA+A++NP F QQL +    R+E+    + +++R
Sbjct:  145 LKNIRRRKTSNNSNQMQQPQSSEQQSLDNFCIEVGRYGLDGEMDSLRRDKQVLMMELVRLRQQQQSTKMYLTLIEEKLKKTESKQKQMMSFLARAMQNPDFIQQLVEQKEKRKEIEEAISKKRQR 269          
BLAST of CX287969 vs. ExPASy Swiss-Prot
Match: HFA2D_ORYSJ (Heat stress transcription factor A-2d OS=Oryza sativa subsp. japonica GN=HSFA2D PE=2 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.797e-22
Identity = 56/99 (56.57%), Postives = 73/99 (73.74%), Query Frame = 3
Query:  261 LKTIKRRRHVSQ---SMQQRGGEACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQL 548
            LK IKRRR +S    S Q  G   CLEVGQ+GLD E++RLKRD+N+L+AE+V+LR  QQ ++  + AME+RL   E+KQ QMM FLA+A++NP FF QL
Sbjct:  121 LKMIKRRRPLSYLPGSQQALG--TCLEVGQFGLDEEIDRLKRDKNILLAEVVKLRHKQQSTKANMRAMEERLQHAEQKQVQMMGFLARAMQNPDFFHQL 217          
BLAST of CX287969 vs. ExPASy Swiss-Prot
Match: HFA1B_ARATH (Heat stress transcription factor A-1b OS=Arabidopsis thaliana GN=HSFA1B PE=2 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 3.066e-22
Identity = 60/126 (47.62%), Postives = 88/126 (69.84%), Query Frame = 3
Query:  261 LKTIKRRR--HVSQSMQQRGGE-----ACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLAQSNAH--RRELGGVQTGRKRRL 611
            LK+I RR+  HV Q+ QQ   +     AC+EVG++G++ E+ERLKRD+NVLM E+VRLRQ QQ + +QL  +  ++   E++QQQMM+FLAKA+++P F  QL Q N +   R++ G  + +KRRL
Sbjct:  111 LKSIVRRKPSHVQQNQQQTQVQSSSVGACVEVGKFGIEEEVERLKRDKNVLMQELVRLRQQQQATENQLQNVGQKVQVMEQRQQQMMSFLAKAVQSPGFLNQLVQQNNNDGNRQIPG--SNKKRRL 234          
BLAST of CX287969 vs. ExPASy Swiss-Prot
Match: HSFA1_ORYSJ (Heat stress transcription factor A-1 OS=Oryza sativa subsp. japonica GN=HSFA1 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.390e-21
Identity = 60/125 (48.00%), Postives = 82/125 (65.60%), Query Frame = 3
Query:  261 LKTIKRRR--HVSQSMQQ-----RGGEACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLAQSNAH-RRELGGVQTGRKRRL 611
            LKTI RR+  H +  +QQ         AC+EVG++G++ E+E LKRD+NVLM E+VRLRQ QQ +  QL  +  RL   E++QQQMM+FLAKA+ +P F  Q  Q N + RR +  V + +KRRL
Sbjct:  121 LKTINRRKPTHGNNQVQQPQLPAAPVPACVEVGKFGMEEEIEMLKRDKNVLMQELVRLRQQQQTTDHQLQTLGKRLQGMEQRQQQMMSFLAKAMHSPGFLAQFVQQNENSRRRI--VASNKKRRL 243          
The following BLAST results are available for this feature:
BLAST of CX287969 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
HSFA2_ARATH5.755e-3759.85Heat stress transcription factor A-2 OS=Arabidopsi... [more]
HSF30_SOLPE7.035e-3556.91Heat shock factor protein HSF30 OS=Solanum peruvia... [more]
HFA2C_ORYSJ3.739e-2852.54Heat stress transcription factor A-2c OS=Oryza sat... [more]
HFA2B_ORYSJ2.052e-2646.32Heat stress transcription factor A-2b OS=Oryza sat... [more]
HFA2E_ORYSJ3.275e-2444.09Heat stress transcription factor A-2e OS=Oryza sat... [more]
HFA2A_ORYSJ7.297e-2447.37Heat stress transcription factor A-2a OS=Oryza sat... [more]
HFA6B_ARATH3.621e-2343.20Heat stress transcription factor A-6b OS=Arabidops... [more]
HFA2D_ORYSJ1.797e-2256.57Heat stress transcription factor A-2d OS=Oryza sat... [more]
HFA1B_ARATH3.066e-2247.62Heat stress transcription factor A-1b OS=Arabidops... [more]
HSFA1_ORYSJ3.390e-2148.00Heat stress transcription factor A-1 OS=Oryza sati... [more]

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Properties
Property NameValue
Genbank descriptionC01015D03SK Veg1 Citrus clementina cDNA clone C01015D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287969 ID=CX287969; Name=CX287969; organism=Citrus clementina; type=EST; length=740bp
CAATTGGAATCAACAATTGCAATATTCAAGGTTTGGCGGAACAATGCTGC
ACGACTAGCGTTTGGACCGTTGATCTGGCGTATTTACTGCAGAAATTTAA
TGTTGGTTTTTCCTACTTCACAATAACATTAGGAGCAAACCCAAATTACT
CTGTTGAGACGTTTTACAAGGAGCAATTGCCTACTGATTTGGTACGAGTG
GATATGCTATTCCAGAAGGCAAGAAGTGCTGGAATTAAAATAGAGGTATG
AACCAGTCATCTGAAAACAATCAAGAGAAGGCGACACGTCTCACAGAGTA
TGCAACAGCGAGGAGGAGAAGCTTGTCTTGAGGTGGGACAATATGGACTG
GATGGTGAGCTTGAAAGATTAAAGAGGGACCGAAATGTGTTGATGGCAGA
AATTGTTAGGCTGAGGCAACATCAGCAGCAATCAAGAGATCAACTCAGTG
CAATGGAGGATAGGTTATTAAGCACAGAAAAGAAGCAGCAGCAGATGATG
ACATTCCTTGCAAAAGCACTCAAAAACCCATCGTTTTTCCAGCAATTAGC
TCAGAGTAATGCACACAGAAGAGAACTGGGAGGTGTTCAAACTGGGAGAA
AGCGGAGACTAACGGCCACACCAAGCATGGAGAACTTANCAGAAACAATT
TCCGTGGCACCTGTGGGTCTGGATTGTGGTCCGGTTGTAGATTACACAGT
CCAGATCAAATGATTGACCTCATGGAACTGAATAGAGACG
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