CX288011

Overview
NameCX288011
Unique NameCX288011
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length733
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX288011_ssr23 microsatellite CX288011_ssr23:23..34. BLAST: Citrus ESTs to Prunus persica proteins V1
CX288011_ssr109 microsatellite CX288011_ssr109:109..123. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX288011 vs. ExPASy Swiss-Prot
Match: PPX2_ARATH (Serine/threonine-protein phosphatase PP-X isozyme 2 OS=Arabidopsis thaliana GN=PPX2 PE=2 SV=2)

HSP 1 Score: 392.119 bits (1006), Expect = 1.603e-108
Identity = 189/196 (96.43%), Postives = 192/196 (97.96%), Query Frame = 3 
Query:  144 MSDLDRQIEQLKKCEPLKESEVKALCLKAMEILVEESNVQRVDAPVTICGDIHGQFYDMKELFKVGGDCPKTNYLFLGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGSVNVWRYCTDIFDYLSLSALIENKIFSVHGGLSPAISTLDQIRTIDRKQEVPHDGAMCDLLWSD 731
            MSDLD+QIEQLK+CE LKESEVKALCLKAMEILVEESNVQRVDAPVTICGDIHGQFYDMKELFKVGGDCPKTNYLFLGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGSVNVWRYCTDIFDYLSLSAL+ENKIF VHGGLSPAI TLDQIR IDRKQEVPHDGAMCDLLWSD
Sbjct:    1 MSDLDKQIEQLKRCEALKESEVKALCLKAMEILVEESNVQRVDAPVTICGDIHGQFYDMKELFKVGGDCPKTNYLFLGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGSVNVWRYCTDIFDYLSLSALVENKIFCVHGGLSPAIMTLDQIRAIDRKQEVPHDGAMCDLLWSD 196
[Close]
BLAST of CX288011 vs. ExPASy Swiss-Prot
Match: PPX1_ARATH (Serine/threonine-protein phosphatase PP-X isozyme 1 OS=Arabidopsis thaliana GN=PPX1 PE=2 SV=1)

HSP 1 Score: 384.415 bits (986), Expect = 3.342e-106
Identity = 183/196 (93.37%), Postives = 190/196 (96.94%), Query Frame = 3 
Query:  144 MSDLDRQIEQLKKCEPLKESEVKALCLKAMEILVEESNVQRVDAPVTICGDIHGQFYDMKELFKVGGDCPKTNYLFLGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGSVNVWRYCTDIFDYLSLSALIENKIFSVHGGLSPAISTLDQIRTIDRKQEVPHDGAMCDLLWSD 731
            MSDLDRQI QLK+CEPL ESEVKALCLKAMEILVEESNVQRVDAPVT+CGDIHGQFYDM ELFKVGGDCPKTNYLF+GDFVDRG+YSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGS NVWRYCTDIFDY+SLSA++ENKIF VHGGLSPAI TLDQIRTIDRKQEVPHDGAMCDLLWSD
Sbjct:    1 MSDLDRQIGQLKRCEPLSESEVKALCLKAMEILVEESNVQRVDAPVTLCGDIHGQFYDMMELFKVGGDCPKTNYLFMGDFVDRGYYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGSSNVWRYCTDIFDYMSLSAVVENKIFCVHGGLSPAIMTLDQIRTIDRKQEVPHDGAMCDLLWSD 196
[Close]
BLAST of CX288011 vs. ExPASy Swiss-Prot
Match: PP4C_XENTR (Serine/threonine-protein phosphatase 4 catalytic subunit OS=Xenopus tropicalis GN=ppp4c PE=2 SV=1)

HSP 1 Score: 368.237 bits (944), Expect = 2.478e-101
Identity = 174/197 (88.32%), Postives = 188/197 (95.43%), Query Frame = 3 
Query:  141 EMSDLDRQIEQLKKCEPLKESEVKALCLKAMEILVEESNVQRVDAPVTICGDIHGQFYDMKELFKVGGDCPKTNYLFLGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGSVNVWRYCTDIFDYLSLSALIENKIFSVHGGLSPAISTLDQIRTIDRKQEVPHDGAMCDLLWSD 731
            E+SDLDRQIEQL++CE +KESEVKALC KA EILVEESNVQRVD+PVT+CGDIHGQFYD+KELF+VGGD P+TNYLF+GDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGSV VWRYCT+IFDYLSLSA+I+ KIF VHGGLSP+I TLDQIRTIDRKQEVPHDG MCDLLWSD
Sbjct:    3 EISDLDRQIEQLRRCELIKESEVKALCAKAREILVEESNVQRVDSPVTVCGDIHGQFYDLKELFRVGGDVPETNYLFMGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGSVTVWRYCTEIFDYLSLSAIIDGKIFCVHGGLSPSIQTLDQIRTIDRKQEVPHDGPMCDLLWSD 199
[Close]
BLAST of CX288011 vs. ExPASy Swiss-Prot
Match: PP4C_XENLA (Serine/threonine-protein phosphatase 4 catalytic subunit OS=Xenopus laevis GN=ppp4c PE=2 SV=1)

HSP 1 Score: 368.237 bits (944), Expect = 2.478e-101
Identity = 174/197 (88.32%), Postives = 188/197 (95.43%), Query Frame = 3 
Query:  141 EMSDLDRQIEQLKKCEPLKESEVKALCLKAMEILVEESNVQRVDAPVTICGDIHGQFYDMKELFKVGGDCPKTNYLFLGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGSVNVWRYCTDIFDYLSLSALIENKIFSVHGGLSPAISTLDQIRTIDRKQEVPHDGAMCDLLWSD 731
            E+SDLDRQIEQL++CE +KESEVKALC KA EILVEESNVQRVD+PVT+CGDIHGQFYD+KELF+VGGD P+TNYLF+GDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGSV VWRYCT+IFDYLSLSA+I+ KIF VHGGLSP+I TLDQIRTIDRKQEVPHDG MCDLLWSD
Sbjct:    3 EISDLDRQIEQLRRCELIKESEVKALCAKAREILVEESNVQRVDSPVTVCGDIHGQFYDLKELFRVGGDVPETNYLFMGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGSVTVWRYCTEIFDYLSLSAIIDGKIFCVHGGLSPSIQTLDQIRTIDRKQEVPHDGPMCDLLWSD 199
[Close]
BLAST of CX288011 vs. ExPASy Swiss-Prot
Match: PP4C_RAT (Serine/threonine-protein phosphatase 4 catalytic subunit OS=Rattus norvegicus GN=Ppp4c PE=1 SV=1)

HSP 1 Score: 368.237 bits (944), Expect = 2.478e-101
Identity = 174/197 (88.32%), Postives = 188/197 (95.43%), Query Frame = 3 
Query:  141 EMSDLDRQIEQLKKCEPLKESEVKALCLKAMEILVEESNVQRVDAPVTICGDIHGQFYDMKELFKVGGDCPKTNYLFLGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGSVNVWRYCTDIFDYLSLSALIENKIFSVHGGLSPAISTLDQIRTIDRKQEVPHDGAMCDLLWSD 731
            E+SDLDRQIEQL++CE +KESEVKALC KA EILVEESNVQRVD+PVT+CGDIHGQFYD+KELF+VGGD P+TNYLF+GDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGSV VWRYCT+IFDYLSLSA+I+ KIF VHGGLSP+I TLDQIRTIDRKQEVPHDG MCDLLWSD
Sbjct:    3 EISDLDRQIEQLRRCELIKESEVKALCAKAREILVEESNVQRVDSPVTVCGDIHGQFYDLKELFRVGGDVPETNYLFMGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGSVTVWRYCTEIFDYLSLSAIIDGKIFCVHGGLSPSIQTLDQIRTIDRKQEVPHDGPMCDLLWSD 199
[Close]
BLAST of CX288011 vs. ExPASy Swiss-Prot
Match: PP4C_PONAB (Serine/threonine-protein phosphatase 4 catalytic subunit OS=Pongo abelii GN=PPP4C PE=2 SV=1)

HSP 1 Score: 368.237 bits (944), Expect = 2.478e-101
Identity = 174/197 (88.32%), Postives = 188/197 (95.43%), Query Frame = 3 
Query:  141 EMSDLDRQIEQLKKCEPLKESEVKALCLKAMEILVEESNVQRVDAPVTICGDIHGQFYDMKELFKVGGDCPKTNYLFLGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGSVNVWRYCTDIFDYLSLSALIENKIFSVHGGLSPAISTLDQIRTIDRKQEVPHDGAMCDLLWSD 731
            E+SDLDRQIEQL++CE +KESEVKALC KA EILVEESNVQRVD+PVT+CGDIHGQFYD+KELF+VGGD P+TNYLF+GDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGSV VWRYCT+IFDYLSLSA+I+ KIF VHGGLSP+I TLDQIRTIDRKQEVPHDG MCDLLWSD
Sbjct:    3 EISDLDRQIEQLRRCELIKESEVKALCAKAREILVEESNVQRVDSPVTVCGDIHGQFYDLKELFRVGGDVPETNYLFMGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGSVTVWRYCTEIFDYLSLSAIIDGKIFCVHGGLSPSIQTLDQIRTIDRKQEVPHDGPMCDLLWSD 199
[Close]
BLAST of CX288011 vs. ExPASy Swiss-Prot
Match: PP4C_MOUSE (Serine/threonine-protein phosphatase 4 catalytic subunit OS=Mus musculus GN=Ppp4c PE=1 SV=2)

HSP 1 Score: 368.237 bits (944), Expect = 2.478e-101
Identity = 174/197 (88.32%), Postives = 188/197 (95.43%), Query Frame = 3 
Query:  141 EMSDLDRQIEQLKKCEPLKESEVKALCLKAMEILVEESNVQRVDAPVTICGDIHGQFYDMKELFKVGGDCPKTNYLFLGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGSVNVWRYCTDIFDYLSLSALIENKIFSVHGGLSPAISTLDQIRTIDRKQEVPHDGAMCDLLWSD 731
            E+SDLDRQIEQL++CE +KESEVKALC KA EILVEESNVQRVD+PVT+CGDIHGQFYD+KELF+VGGD P+TNYLF+GDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGSV VWRYCT+IFDYLSLSA+I+ KIF VHGGLSP+I TLDQIRTIDRKQEVPHDG MCDLLWSD
Sbjct:    3 EISDLDRQIEQLRRCELIKESEVKALCAKAREILVEESNVQRVDSPVTVCGDIHGQFYDLKELFRVGGDVPETNYLFMGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGSVTVWRYCTEIFDYLSLSAIIDGKIFCVHGGLSPSIQTLDQIRTIDRKQEVPHDGPMCDLLWSD 199
[Close]
BLAST of CX288011 vs. ExPASy Swiss-Prot
Match: PP4C_HUMAN (Serine/threonine-protein phosphatase 4 catalytic subunit OS=Homo sapiens GN=PPP4C PE=1 SV=1)

HSP 1 Score: 368.237 bits (944), Expect = 2.478e-101
Identity = 174/197 (88.32%), Postives = 188/197 (95.43%), Query Frame = 3 
Query:  141 EMSDLDRQIEQLKKCEPLKESEVKALCLKAMEILVEESNVQRVDAPVTICGDIHGQFYDMKELFKVGGDCPKTNYLFLGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGSVNVWRYCTDIFDYLSLSALIENKIFSVHGGLSPAISTLDQIRTIDRKQEVPHDGAMCDLLWSD 731
            E+SDLDRQIEQL++CE +KESEVKALC KA EILVEESNVQRVD+PVT+CGDIHGQFYD+KELF+VGGD P+TNYLF+GDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGSV VWRYCT+IFDYLSLSA+I+ KIF VHGGLSP+I TLDQIRTIDRKQEVPHDG MCDLLWSD
Sbjct:    3 EISDLDRQIEQLRRCELIKESEVKALCAKAREILVEESNVQRVDSPVTVCGDIHGQFYDLKELFRVGGDVPETNYLFMGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGSVTVWRYCTEIFDYLSLSAIIDGKIFCVHGGLSPSIQTLDQIRTIDRKQEVPHDGPMCDLLWSD 199
[Close]
BLAST of CX288011 vs. ExPASy Swiss-Prot
Match: PP4C_BOVIN (Serine/threonine-protein phosphatase 4 catalytic subunit OS=Bos taurus GN=PPP4C PE=2 SV=1)

HSP 1 Score: 368.237 bits (944), Expect = 2.478e-101
Identity = 174/197 (88.32%), Postives = 188/197 (95.43%), Query Frame = 3 
Query:  141 EMSDLDRQIEQLKKCEPLKESEVKALCLKAMEILVEESNVQRVDAPVTICGDIHGQFYDMKELFKVGGDCPKTNYLFLGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGSVNVWRYCTDIFDYLSLSALIENKIFSVHGGLSPAISTLDQIRTIDRKQEVPHDGAMCDLLWSD 731
            E+SDLDRQIEQL++CE +KESEVKALC KA EILVEESNVQRVD+PVT+CGDIHGQFYD+KELF+VGGD P+TNYLF+GDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGSV VWRYCT+IFDYLSLSA+I+ KIF VHGGLSP+I TLDQIRTIDRKQEVPHDG MCDLLWSD
Sbjct:    3 EISDLDRQIEQLRRCELIKESEVKALCAKAREILVEESNVQRVDSPVTVCGDIHGQFYDLKELFRVGGDVPETNYLFMGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGSVTVWRYCTEIFDYLSLSAIIDGKIFCVHGGLSPSIQTLDQIRTIDRKQEVPHDGPMCDLLWSD 199
[Close]
BLAST of CX288011 vs. ExPASy Swiss-Prot
Match: PP4C_RABIT (Serine/threonine-protein phosphatase 4 catalytic subunit OS=Oryctolagus cuniculus GN=PPP4C PE=1 SV=2)

HSP 1 Score: 366.696 bits (940), Expect = 7.210e-101
Identity = 174/197 (88.32%), Postives = 187/197 (94.92%), Query Frame = 3 
Query:  141 EMSDLDRQIEQLKKCEPLKESEVKALCLKAMEILVEESNVQRVDAPVTICGDIHGQFYDMKELFKVGGDCPKTNYLFLGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGSVNVWRYCTDIFDYLSLSALIENKIFSVHGGLSPAISTLDQIRTIDRKQEVPHDGAMCDLLWSD 731
            E+SDLDRQIEQL +CE +KESEVKALC KA EILVEESNVQRVD+PVT+CGDIHGQFYD+KELF+VGGD P+TNYLF+GDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGSV VWRYCT+IFDYLSLSA+I+ KIF VHGGLSP+I TLDQIRTIDRKQEVPHDG MCDLLWSD
Sbjct:    3 EISDLDRQIEQLLRCELIKESEVKALCAKAREILVEESNVQRVDSPVTVCGDIHGQFYDLKELFRVGGDVPETNYLFMGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGSVTVWRYCTEIFDYLSLSAIIDGKIFCVHGGLSPSIQTLDQIRTIDRKQEVPHDGPMCDLLWSD 199
The following BLAST results are available for this feature:
BLAST of CX288011 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 197
Match NameE-valueIdentityDescription
PPX2_ARATH1.603e-10896.43Serine/threonine-protein phosphatase PP-X isozyme ... [more]
PPX1_ARATH3.342e-10693.37Serine/threonine-protein phosphatase PP-X isozyme ... [more]
PP4C_XENTR2.478e-10188.32Serine/threonine-protein phosphatase 4 catalytic s... [more]
PP4C_XENLA2.478e-10188.32Serine/threonine-protein phosphatase 4 catalytic s... [more]
PP4C_RAT2.478e-10188.32Serine/threonine-protein phosphatase 4 catalytic s... [more]
PP4C_PONAB2.478e-10188.32Serine/threonine-protein phosphatase 4 catalytic s... [more]
PP4C_MOUSE2.478e-10188.32Serine/threonine-protein phosphatase 4 catalytic s... [more]
PP4C_HUMAN2.478e-10188.32Serine/threonine-protein phosphatase 4 catalytic s... [more]
PP4C_BOVIN2.478e-10188.32Serine/threonine-protein phosphatase 4 catalytic s... [more]
PP4C_RABIT7.210e-10188.32Serine/threonine-protein phosphatase 4 catalytic s... [more]

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Properties
Property NameValue
Genbank descriptionC01015G12SK Veg1 Citrus clementina cDNA clone C01015G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288011 ID=CX288011; Name=CX288011; organism=Citrus clementina; type=EST; length=733bp
AAAAGTTTGTAGATGCAGAAGGATTCATTCATTCACGCAGAGTAGGTGAC
AGAGAGACACAAGCCGCGGCTCAAAATCGGGCGAGCATCAGTTAGGTTAG
AGGAACTCAAGTGAAGTGAAGTGAAGGGAAGATAAAAAAAGAGATGTCGG
ATTTAGATAGGCAAATAGAGCAGCTGAAGAAATGCGAGCCGTTGAAAGAG
TCGGAGGTTAAAGCCCTTTGTCTCAAAGCCATGGAAATCCTCGTCGAAGA
AAGCAACGTTCAACGTGTTGACGCCCCTGTCACTATATGCGGTGACATCC
ATGGGCAGTTCTATGACATGAAAGAGCTTTTTAAAGTAGGGGGTGACTGC
CCAAAGACAAATTATTTGTTTCTTGGAGATTTTGTTGACAGAGGATTTTA
CTCCGTCGAGACGTTTCTACTTCTGCTTGCCCTTAAGGTGAGATATCCAG
ATCGGATAACACTCATTAGAGGGAACCATGAAAGTCGTCAGATCACACAG
GTATATGGATTCTATGATGAATGCCTACGTAAATATGGCTCTGTGAATGT
TTGGAGATATTGCACCGATATTTTTGATTATTTAAGTTTGTCTGCTCTCA
TAGAGAACAAGATTTTTAGTGTCCATGGTGGTCTCTCTCCTGCCATCTCA
ACATTGGATCAGATTCGAACAATTGATCGTAAACAAGAAGTACCTCATGA
TGGTGCCATGTGTGACCTTCTGTGGTCAGATCC
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