CX288015

Overview
NameCX288015
Unique NameCX288015
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288015 vs. ExPASy Swiss-Prot
Match: APC10_ARATH (Anaphase-promoting complex subunit 10 OS=Arabidopsis thaliana GN=At2g18290 PE=2 SV=2)

HSP 1 Score: 327.02 bits (837), Expect = 6.184e-89
Identity = 153/189 (80.95%), Postives = 168/189 (88.89%), Query Frame = 3
Query:  156 MATESSESEEEGKITGGNHQLLIDDDLREMGKKAAWSVSSCKPGNGVSALRDDNLDTYWQSDGAQPHLVNIXXXXXXXXXXXXXYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTFVNTFMLQIVVLSNHLNGRDTHVRQIKIYGPRPNPIPHQQFQFTSSEFITYS 722
            MATESSESEEEGKI+GGN++L+IDDDLREMGK AAWSVSSCKPGNGV+ LRDDNL+TYWQSDG QPHL+NI             YVDFKLDESYTPSKIS+RAGDGFHNLKEIK+VELVKPTGWV +SLSG DPR+TFVNTFMLQI +LSNHLNGRDTH+RQIK+YGPRPNPIPHQ FQFTS EF+TYS
Sbjct:    1 MATESSESEEEGKISGGNYKLIIDDDLREMGKNAAWSVSSCKPGNGVTTLRDDNLETYWQSDGLQPHLINIQFQKKVKLQLVVLYVDFKLDESYTPSKISIRAGDGFHNLKEIKSVELVKPTGWVCLSLSGTDPRETFVNTFMLQIAILSNHLNGRDTHIRQIKVYGPRPNPIPHQPFQFTSMEFLTYS 189          
BLAST of CX288015 vs. ExPASy Swiss-Prot
Match: APC10_MOUSE (Anaphase-promoting complex subunit 10 OS=Mus musculus GN=Anapc10 PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.304e-46
Identity = 87/142 (61.27%), Postives = 108/142 (76.06%), Query Frame = 3
Query:  234 LREMGKKAAWSVSSCKPGNGVSALRDDNLDTYWQSDGAQPHLVNIXXXXXXXXXXXXXYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTFVNTFMLQIVVLSNHLNGRDTHVRQIKIYGP 659
            +RE+G +A WS+SSCKPG GV  LRDDNL+TYWQSDG+QPHLVNI             Y D+K DESYTPSKISVR G+ FHNL+EI+ +ELV+P+GW+++ L+ N  + T   TFM+QI VL+NH NGRDTH+RQIKIY P
Sbjct:   22 VREIGSQAVWSLSSCKPGFGVDQLRDDNLETYWQSDGSQPHLVNIQFRRKTTVKTLCIYADYKSDESYTPSKISVRVGNNFHNLQEIRQLELVEPSGWIHVPLTDNHKKPT--RTFMIQIAVLANHQNGRDTHMRQIKIYTP 161          
BLAST of CX288015 vs. ExPASy Swiss-Prot
Match: APC10_HUMAN (Anaphase-promoting complex subunit 10 OS=Homo sapiens GN=ANAPC10 PE=1 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.304e-46
Identity = 87/142 (61.27%), Postives = 108/142 (76.06%), Query Frame = 3
Query:  234 LREMGKKAAWSVSSCKPGNGVSALRDDNLDTYWQSDGAQPHLVNIXXXXXXXXXXXXXYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTFVNTFMLQIVVLSNHLNGRDTHVRQIKIYGP 659
            +RE+G +A WS+SSCKPG GV  LRDDNL+TYWQSDG+QPHLVNI             Y D+K DESYTPSKISVR G+ FHNL+EI+ +ELV+P+GW+++ L+ N  + T   TFM+QI VL+NH NGRDTH+RQIKIY P
Sbjct:   22 VREIGSQAVWSLSSCKPGFGVDQLRDDNLETYWQSDGSQPHLVNIQFRRKTTVKTLCIYADYKSDESYTPSKISVRVGNNFHNLQEIRQLELVEPSGWIHVPLTDNHKKPT--RTFMIQIAVLANHQNGRDTHMRQIKIYTP 161          
BLAST of CX288015 vs. ExPASy Swiss-Prot
Match: APC10_BOVIN (Anaphase-promoting complex subunit 10 OS=Bos taurus GN=ANAPC10 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.225e-46
Identity = 86/142 (60.56%), Postives = 108/142 (76.06%), Query Frame = 3
Query:  234 LREMGKKAAWSVSSCKPGNGVSALRDDNLDTYWQSDGAQPHLVNIXXXXXXXXXXXXXYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTFVNTFMLQIVVLSNHLNGRDTHVRQIKIYGP 659
            +RE+G +A WS+SSCKPG GV  LRDDNL+TYWQSDG+QPHLVN+             Y D+K DESYTPSKISVR G+ FHNL+EI+ +ELV+P+GW+++ L+ N  + T   TFM+QI VL+NH NGRDTH+RQIKIY P
Sbjct:   22 VREIGSQAVWSLSSCKPGFGVDQLRDDNLETYWQSDGSQPHLVNLQFRRKTTVKTLCIYADYKSDESYTPSKISVRVGNNFHNLQEIRQLELVEPSGWIHVPLTDNHKKPT--RTFMIQIAVLANHQNGRDTHMRQIKIYTP 161          
BLAST of CX288015 vs. ExPASy Swiss-Prot
Match: APC10_DROME (Anaphase-promoting complex subunit 10 OS=Drosophila melanogaster GN=CG11419 PE=1 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 1.070e-40
Identity = 77/142 (54.23%), Postives = 103/142 (72.54%), Query Frame = 3
Query:  234 LREMGKKAAWSVSSCKPGNGVSALRDDNLDTYWQSDGAQPHLVNIXXXXXXXXXXXXXYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTFVNTFMLQIVVLSNHLNGRDTHVRQIKIYGP 659
            +RE+G +A WS+SSCKPG GV  LRD+ +DTYWQSDG  PHLVNI             Y D+KLDESYTPS+IS+R+G  F++L+E++ ++L +PTGWV I +   + +   + TFMLQI V+SNH NGRDTH+RQI+I+ P
Sbjct:   30 VREVGAQAVWSLSSCKPGFGVERLRDNIMDTYWQSDGQLPHLVNIQFHKRTNISQIYIYTDYKLDESYTPSRISIRSGTNFNDLQELQVMDLTEPTGWVQIPIKDGNVKS--IRTFMLQIAVISNHQNGRDTHMRQIRIHAP 169          
BLAST of CX288015 vs. ExPASy Swiss-Prot
Match: APC10_DICDI (Anaphase-promoting complex subunit 10 OS=Dictyostelium discoideum GN=anapc10 PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.308e-35
Identity = 77/157 (49.04%), Postives = 104/157 (66.24%), Query Frame = 3
Query:  240 EMGKKAAWSVSSCKPGNGVSALRDDNLDTYWQSDGAQPHLVNIXXXXXXXXXXXXXYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTFVNTFMLQIVVLSNHLNGRDTHVRQIKIYGPRPNPIPHQQF-QFTSSE 707
            E+GK A+WSVSS KPG+GV  LRD+NLDT+WQSD  QPH + I             + D+KLDESYTP KIS++AG   H+L+EI   EL +P+GW+ I LS N   +  +   +LQI +LSN  NGRD+H+RQIK+YG + +   + Q+ +F S E
Sbjct:   27 EIGKHASWSVSSAKPGSGVEQLRDNNLDTFWQSDAQQPHHITIQFPKKCYIENLLIHCDYKLDESYTPCKISIKAGTILHDLQEIILTELEEPSGWINIPLSFN---NNSLKANLLQISILSNLKNGRDSHIRQIKVYGKKISIENYTQYPKFNSPE 180          
BLAST of CX288015 vs. ExPASy Swiss-Prot
Match: APC10_SCHPO (Anaphase-promoting complex subunit 10 OS=Schizosaccharomyces pombe GN=apc10 PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.548e-31
Identity = 66/161 (40.99%), Postives = 103/161 (63.98%), Query Frame = 3
Query:  240 EMGKKAAWSVSSCKPGNGVSALRDDNLDTYWQSDGAQPHLVNIXXXXXXXXXXXXXYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTFVNTFMLQIVVLSNHLNGRDTHVRQIKIYGP--RPNPIPHQQFQFTSSEFIT 716
            ++G  A W+ SS K G  +  +RDDN+DTYWQSDG+QPH ++I             Y+ + LDESYTPS + + AG GF +L+ + TV++ +PTGWV++ + G+  R+  ++  ++QI +L+NH +G+D+HVR IKIY P      I   +  +TS +FI+
Sbjct:   25 DIGNLAQWTCSSEKSGFPIRLVRDDNIDTYWQSDGSQPHTIHIKFVKRVSIKYVSMYLQYTLDESYTPSTLRISAGTGFQDLEIVTTVQVEEPTGWVHVPV-GDFGRNGLLDVHLIQIKILANHQSGKDSHVRLIKIYAPEIEQPAIAVDEIPYTSLQFIS 184          
BLAST of CX288015 vs. ExPASy Swiss-Prot
Match: APC10_YEAST (Anaphase-promoting complex subunit DOC1 OS=Saccharomyces cerevisiae GN=DOC1 PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 3.028e-19
Identity = 50/139 (35.97%), Postives = 69/139 (49.64%), Query Frame = 3
Query:  255 AAWSVSSCKPGNGVSALRDDNLDTYWQSDGAQPHLVNIXXXXXXXXXXXXXYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTFVNTFMLQIVVLSNHLNGRDTHVRQIKIYGPRPNP 671
            A W  SS K GN V    DDN DT+WQSDG QPH ++I             +     DESY PS + V AG    + +  K +E+    GWV +    N   D  +    ++++   NH NG+DTH+R I++Y P   P
Sbjct:   88 ALWKPSSFKLGNPVDFALDDNYDTFWQSDGGQPHQLDIMFSKRMDICVMAIFFSMIADESYAPSLVKVYAGHSPSDARFYKMLEVRNVNGWVALRFLDNREDDQLLKCQFIRLLFPVNHENGKDTHLRGIRLYVPSNEP 226          
The following BLAST results are available for this feature:
BLAST of CX288015 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
APC10_ARATH6.184e-8980.95Anaphase-promoting complex subunit 10 OS=Arabidops... [more]
APC10_MOUSE1.304e-4661.27Anaphase-promoting complex subunit 10 OS=Mus muscu... [more]
APC10_HUMAN1.304e-4661.27Anaphase-promoting complex subunit 10 OS=Homo sapi... [more]
APC10_BOVIN2.225e-4660.56Anaphase-promoting complex subunit 10 OS=Bos tauru... [more]
APC10_DROME1.070e-4054.23Anaphase-promoting complex subunit 10 OS=Drosophil... [more]
APC10_DICDI2.308e-3549.04Anaphase-promoting complex subunit 10 OS=Dictyoste... [more]
APC10_SCHPO1.548e-3140.99Anaphase-promoting complex subunit 10 OS=Schizosac... [more]
APC10_YEAST3.028e-1935.97Anaphase-promoting complex subunit DOC1 OS=Sacchar... [more]
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Properties
Property NameValue
Genbank descriptionC01015H04SK Veg1 Citrus clementina cDNA clone C01015H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288015 ID=CX288015; Name=CX288015; organism=Citrus clementina; type=EST; length=723bp
GGTCGTTTGTAAAATAACAAACGGAGACGCCCCCTTTAGATTCGAGGAAG
CAGAATAGATCAACAACTACCCTTTCCCCAATAAATCCCAGCAAAATCGA
CATCAGTCCATCCAAAGCCATCGGAGCGGAGTCAATTATTGTGTGGAATA
AGCTAATGGCAACAGAGTCATCAGAATCAGAAGAAGAAGGGAAGATCACT
GGAGGAAATCATCAATTATTAATTGATGACGATCTTAGAGAAATGGGAAA
GAAAGCTGCTTGGAGTGTCAGCTCTTGCAAGCCTGGCAATGGCGTCTCTG
CTCTTCGCGATGACAATCTCGATACTTATTGGCAATCGGACGGTGCTCAG
CCTCATTTGGTTAATATTCAGTTCCAGAAGAAAGTTAAGTTGCAATTAGT
TGTGCTTTATGTGGATTTTAAGCTTGATGAGAGCTATACACCTAGTAAAA
TCTCTGTTCGAGCAGGTGATGGTTTTCATAACTTGAAGGAGATAAAAACT
GTGGAACTTGTCAAGCCAACTGGGTGGGTCTATATATCGTTATCTGGAAA
TGATCCTAGGGACACTTTTGTCAACACTTTTATGTTGCAAATTGTTGTGT
TGTCAAACCATCTTAATGGGAGGGATACTCATGTGCGCCAGATCAAAATT
TATGGACCTCGACCGAACCCCATTCCACATCAACAGTTTCAGTTTACATC
AAGTGAGTTTATCACTTACTCTA
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