CX288018

Overview
NameCX288018
Unique NameCX288018
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length594
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX288018 vs. ExPASy Swiss-Prot
Match: BPS1_ARATH (Protein BPS1, chloroplastic OS=Arabidopsis thaliana GN=BPS1 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.772e-18
Identity = 57/123 (46.34%), Postives = 74/123 (60.16%), Query Frame = 2 
Query:   20 LPWAPAFSALQANVNAEVRNILSSGRATVLNELEAVDGSVKKLYEVI-QNEVDTVEEELLQKSVLDLGKRADNLSQGLDHLTKAVDGFFKIVLSGRDALLCNLRATG------TAPDILVGRN 367
            LPWA +F  +Q  +NAE++NI  S   TVL ELEAV   VKKLY  I Q  +D +  + L+ SV +       LS G+D ++K VD FFKI+LSGRD LL NLR+ G      T+P    G+N
Sbjct:  230 LPWAQSFMEVQNTMNAEIKNIFLSDGLTVLKELEAVASGVKKLYPAIQQGSIDPISLQPLKDSVTE-------LSNGIDLVSKEVDCFFKILLSGRDTLLENLRSMGASTLQATSPKKAAGKN 345
The following BLAST results are available for this feature:
BLAST of CX288018 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
BPS1_ARATH1.772e-1846.34Protein BPS1, chloroplastic OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionC01015H07SK Veg1 Citrus clementina cDNA clone C01015H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288018 ID=CX288018; Name=CX288018; organism=Citrus clementina; type=EST; length=594bp
GAATTCGGCACGAGGCACATTACCTTGGGCACCAGCATTTTCTGCCTTGC
AAGCTAATGTGAATGCAGAAGTTAGGAACATATTATCCTCTGGAAGAGCT
ACAGTTTTGAACGAACTAGAGGCTGTTGATGGGAGCGTTAAGAAATTGTA
TGAGGTGATTCAAAATGAGGTTGACACTGTTGAAGAGGAACTGCTCCAGA
AATCTGTTTTGGATTTGGGAAAGAGGGCAGATAACCTTTCTCAAGGGCTA
GATCATCTTACAAAGGCAGTGGATGGCTTTTTCAAAATAGTTTTGAGTGG
GCGTGATGCTTTGCTTTGTAATCTAAGAGCAACTGGTACTGCCCCTGACA
TACTAGTAGGGAGGAATGCAGAACCTGTCAGGAGGTGAATATTGATGAAT
GAACTAAAATTTACTGTATACAAGTGGTGTACGTATGGGGTTTTCTGTTC
TCTGATTGATAGAAATATACCAACTAGTATTCTGTGTGGTCTGAGTCGTA
AGGTGTGTCGTACTACTATTTCTCCTGTCTGTAAATGTACTTTGTGCTGT
TTAATGCCAAGATTATATCACTGGAAAAAAAAAAAAAAAAAAAA
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